Wall clock time and date at job start Mon Mar 30 2020 03:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46799 * 2 1 4 4 C 1.53002 * 109.47529 * 179.31496 * 3 2 1 5 5 C 1.53002 * 109.47254 * 58.19204 * 4 3 2 6 6 C 1.53282 * 109.45858 * 59.32487 * 3 2 1 7 7 C 1.53180 * 109.05832 * 182.44943 * 6 3 2 8 8 C 1.53170 * 109.11313 * 56.93818 * 7 6 3 9 9 C 1.53094 * 109.16496 * 302.97315 * 8 7 6 10 10 H 1.09001 * 109.48024 * 297.62609 * 9 8 7 11 11 C 1.50699 * 109.48123 * 177.60253 * 9 8 7 12 12 H 1.08000 * 120.00247 * 0.02562 * 11 9 8 13 13 C 1.37882 * 119.99793 * 180.02562 * 11 9 8 14 14 N 1.31505 * 119.99996 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99695 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47131 * 59.99918 * 15 13 11 17 17 H 1.48495 * 109.46804 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46949 * 300.00137 * 15 13 11 19 19 O 1.42904 * 109.47825 * 299.33652 * 3 2 1 20 20 H 1.09004 * 109.47310 * 173.88337 * 1 2 3 21 21 H 1.09001 * 109.47815 * 293.88519 * 1 2 3 22 22 H 1.09004 * 109.46776 * 53.88726 * 1 2 3 23 23 H 1.08994 * 109.47139 * 239.99483 * 2 1 3 24 24 H 1.09003 * 109.46667 * 119.99278 * 2 1 3 25 25 H 1.08999 * 109.47004 * 178.18928 * 4 3 2 26 26 H 1.08994 * 109.47423 * 298.19295 * 4 3 2 27 27 H 1.08994 * 109.47220 * 174.11327 * 5 4 3 28 28 H 1.08994 * 109.47097 * 294.12068 * 5 4 3 29 29 H 1.09000 * 109.46935 * 54.11742 * 5 4 3 30 30 H 1.08997 * 109.64255 * 62.53364 * 6 3 2 31 31 H 1.08999 * 109.50303 * 302.27699 * 6 3 2 32 32 H 1.09001 * 109.54275 * 297.02271 * 7 6 3 33 33 H 1.09006 * 109.53916 * 176.85477 * 7 6 3 34 34 H 1.08996 * 109.52313 * 62.87783 * 8 7 6 35 35 H 1.09004 * 109.52461 * 183.00581 * 8 7 6 36 36 H 0.97007 * 119.99942 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4428 0.0172 5 6 4.0938 0.6777 -1.1998 6 6 1.5150 2.1697 1.2430 7 6 1.9798 3.6287 1.2026 8 6 1.4936 4.2742 -0.0986 9 6 2.0194 3.4658 -1.2876 10 1 3.1091 3.4926 -1.2921 11 6 1.4967 4.0603 -2.5700 12 1 0.8543 4.9279 -2.5405 13 6 1.8387 3.4964 -3.7809 14 7 2.6205 2.4396 -3.8167 15 14 1.1903 4.2329 -5.3704 16 1 1.6496 5.6402 -5.4874 17 1 1.6995 3.4479 -6.5235 18 1 -0.2943 4.1957 -5.3637 19 8 1.5764 2.1118 -1.1745 20 1 -0.3634 -1.0218 -0.1095 21 1 -0.3635 0.4161 0.9396 22 1 -0.3633 0.6057 -0.8303 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5137 0.8901 25 1 3.9334 2.4699 -0.0152 26 1 3.9231 0.9610 0.9289 27 1 5.1792 0.7662 -1.2450 28 1 3.8181 -0.3734 -1.1144 29 1 3.6571 1.0953 -2.1070 30 1 1.9034 1.6884 2.1405 31 1 0.4256 2.1347 1.2522 32 1 3.0684 3.6658 1.2436 33 1 1.5644 4.1674 2.0544 34 1 0.4038 4.2815 -0.1165 35 1 1.8658 5.2969 -0.1592 36 1 2.8608 2.0427 -4.6686 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306270084.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:07 Heat of formation + Delta-G solvation = -73.056689 kcal Electronic energy + Delta-G solvation = -15687.200233 eV Core-core repulsion = 13363.426581 eV Total energy + Delta-G solvation = -2323.773652 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.03735 -34.11495 -32.56653 -31.94074 -31.03401 -28.62554 -25.58463 -23.90962 -22.36741 -21.69798 -20.26719 -17.81037 -16.49733 -14.80346 -14.70745 -14.29943 -14.19864 -13.80776 -13.60288 -12.76925 -12.43230 -12.10164 -11.88271 -11.32348 -11.28031 -11.09535 -10.91017 -10.85535 -10.60213 -10.49345 -10.29383 -10.25814 -10.00796 -9.85480 -9.48652 -9.23592 -8.70247 -8.37013 -7.67277 -5.95966 -4.06924 3.34827 3.39269 3.42164 4.45477 5.02843 5.44876 5.48930 5.53066 5.71802 5.77454 5.91468 5.95603 6.06294 6.16419 6.23637 6.35560 6.38452 6.42853 6.48014 6.55709 6.65468 6.69573 6.82527 6.85173 6.92857 6.94340 7.05821 7.08323 7.21643 7.60960 7.63239 7.99783 8.38105 8.86340 9.25626 9.62803 11.10550 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.031127 B = 0.011960 C = 0.010994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.316376 B = 2340.510375 C = 2546.289150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C 0.113 3.887 4 C -0.137 4.137 5 C -0.161 4.161 6 C -0.140 4.140 7 C -0.121 4.121 8 C -0.144 4.144 9 C 0.218 3.782 10 H 0.019 0.981 11 C -0.526 4.526 12 H 0.060 0.940 13 C 0.081 3.919 14 N -0.858 5.858 15 Si 0.890 3.110 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 O -0.340 6.340 20 H 0.039 0.961 21 H 0.045 0.955 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.042 0.958 27 H 0.030 0.970 28 H 0.036 0.964 29 H 0.112 0.888 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.167 -2.701 7.398 7.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.142 4.142 3 C 0.072 3.928 4 C -0.175 4.175 5 C -0.218 4.218 6 C -0.178 4.178 7 C -0.159 4.159 8 C -0.182 4.182 9 C 0.162 3.838 10 H 0.036 0.964 11 C -0.563 4.563 12 H 0.078 0.922 13 C -0.125 4.125 14 N -0.494 5.494 15 Si 0.717 3.283 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 O -0.259 6.259 20 H 0.058 0.942 21 H 0.064 0.936 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.131 0.869 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.191 -2.921 7.139 7.716 hybrid contribution -0.127 0.478 -0.523 0.720 sum -0.318 -2.443 6.616 7.060 Atomic orbital electron populations 1.21721 0.96181 1.00341 1.02067 1.21459 0.95987 0.95641 1.01146 1.21225 0.91892 0.92064 0.87623 1.21996 0.96952 1.00850 0.97693 1.21929 0.98914 0.98977 1.01946 1.22233 1.01110 0.96139 0.98293 1.21649 1.00257 0.95808 0.98185 1.22259 1.00703 0.99480 0.95772 1.19670 0.94258 0.78646 0.91201 0.96391 1.20974 1.32651 1.12867 0.89840 0.92177 1.24996 0.94226 0.94380 0.98900 1.69879 1.33791 1.20261 1.25459 0.86723 0.79459 0.79107 0.82989 1.20311 1.21286 1.20238 1.88352 1.72808 1.26975 1.37798 0.94164 0.93609 0.91182 0.91246 0.92791 0.91807 0.93948 0.95057 0.94452 0.86928 0.93060 0.91721 0.92638 0.93623 0.92763 0.92843 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.30 37.16 0.35 -2.14 16 2 C -0.10 -1.89 4.79 -26.73 -0.13 -2.02 16 3 C 0.11 2.27 0.47 -90.47 -0.04 2.23 16 4 C -0.14 -2.68 4.31 -26.73 -0.12 -2.80 16 5 C -0.16 -3.28 9.27 37.16 0.34 -2.93 16 6 C -0.14 -2.52 4.63 -26.49 -0.12 -2.64 16 7 C -0.12 -2.22 5.71 -26.55 -0.15 -2.37 16 8 C -0.14 -3.11 5.36 -26.59 -0.14 -3.25 16 9 C 0.22 5.52 2.17 -27.84 -0.06 5.46 16 10 H 0.02 0.50 6.30 -51.93 -0.33 0.17 16 11 C -0.53 -14.63 8.79 -34.44 -0.30 -14.94 16 12 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 13 C 0.08 2.23 5.40 -17.82 -0.10 2.14 16 14 N -0.86 -24.21 11.42 55.43 0.63 -23.58 16 15 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 O -0.34 -8.43 7.82 -35.23 -0.28 -8.71 16 20 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.04 0.71 6.71 -51.93 -0.35 0.37 16 22 H 0.07 1.38 7.53 -51.93 -0.39 0.99 16 23 H 0.07 1.33 6.57 -51.93 -0.34 0.99 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.06 1.33 4.97 -51.93 -0.26 1.07 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.04 0.69 6.75 -51.93 -0.35 0.34 16 29 H 0.11 2.74 6.10 -51.93 -0.32 2.43 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 1.17 6.44 -51.93 -0.33 0.83 16 32 H 0.05 1.00 6.66 -51.93 -0.35 0.65 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 269.53 15.07 4.06 4.06 Total: -1.00 -28.02 269.53 -7.01 -35.03 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -5.94 Total: 0.23 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: -0.47 Total: -23.27 kcal Atomic # 7 Polarization: -24.21 SS G_CDS: 0.63 Total: -23.58 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.28 Total: -8.71 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.02 -7.01 -35.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306270084.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.027 kcal (2) G-P(sol) polarization free energy of solvation -28.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds