Wall clock time and date at job start Mon Mar 30 2020 03:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46799 * 2 1 4 4 C 1.53002 * 109.47529 * 179.31496 * 3 2 1 5 5 C 1.53002 * 109.47254 * 58.19204 * 4 3 2 6 6 C 1.53282 * 109.45858 * 59.32487 * 3 2 1 7 7 C 1.53180 * 109.05832 * 182.44943 * 6 3 2 8 8 C 1.53170 * 109.11313 * 56.93818 * 7 6 3 9 9 C 1.53094 * 109.16496 * 302.97315 * 8 7 6 10 10 H 1.09001 * 109.48024 * 297.62609 * 9 8 7 11 11 C 1.50699 * 109.48123 * 177.60253 * 9 8 7 12 12 H 1.08000 * 120.00247 * 0.02562 * 11 9 8 13 13 C 1.37882 * 119.99793 * 180.02562 * 11 9 8 14 14 N 1.31505 * 119.99996 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99695 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47131 * 59.99918 * 15 13 11 17 17 H 1.48495 * 109.46804 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46949 * 300.00137 * 15 13 11 19 19 O 1.42904 * 109.47825 * 299.33652 * 3 2 1 20 20 H 1.09004 * 109.47310 * 173.88337 * 1 2 3 21 21 H 1.09001 * 109.47815 * 293.88519 * 1 2 3 22 22 H 1.09004 * 109.46776 * 53.88726 * 1 2 3 23 23 H 1.08994 * 109.47139 * 239.99483 * 2 1 3 24 24 H 1.09003 * 109.46667 * 119.99278 * 2 1 3 25 25 H 1.08999 * 109.47004 * 178.18928 * 4 3 2 26 26 H 1.08994 * 109.47423 * 298.19295 * 4 3 2 27 27 H 1.08994 * 109.47220 * 174.11327 * 5 4 3 28 28 H 1.08994 * 109.47097 * 294.12068 * 5 4 3 29 29 H 1.09000 * 109.46935 * 54.11742 * 5 4 3 30 30 H 1.08997 * 109.64255 * 62.53364 * 6 3 2 31 31 H 1.08999 * 109.50303 * 302.27699 * 6 3 2 32 32 H 1.09001 * 109.54275 * 297.02271 * 7 6 3 33 33 H 1.09006 * 109.53916 * 176.85477 * 7 6 3 34 34 H 1.08996 * 109.52313 * 62.87783 * 8 7 6 35 35 H 1.09004 * 109.52461 * 183.00581 * 8 7 6 36 36 H 0.97007 * 119.99942 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4428 0.0172 5 6 4.0938 0.6777 -1.1998 6 6 1.5150 2.1697 1.2430 7 6 1.9798 3.6287 1.2026 8 6 1.4936 4.2742 -0.0986 9 6 2.0194 3.4658 -1.2876 10 1 3.1091 3.4926 -1.2921 11 6 1.4967 4.0603 -2.5700 12 1 0.8543 4.9279 -2.5405 13 6 1.8387 3.4964 -3.7809 14 7 2.6205 2.4396 -3.8167 15 14 1.1903 4.2329 -5.3704 16 1 1.6496 5.6402 -5.4874 17 1 1.6995 3.4479 -6.5235 18 1 -0.2943 4.1957 -5.3637 19 8 1.5764 2.1118 -1.1745 20 1 -0.3634 -1.0218 -0.1095 21 1 -0.3635 0.4161 0.9396 22 1 -0.3633 0.6057 -0.8303 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5137 0.8901 25 1 3.9334 2.4699 -0.0152 26 1 3.9231 0.9610 0.9289 27 1 5.1792 0.7662 -1.2450 28 1 3.8181 -0.3734 -1.1144 29 1 3.6571 1.0953 -2.1070 30 1 1.9034 1.6884 2.1405 31 1 0.4256 2.1347 1.2522 32 1 3.0684 3.6658 1.2436 33 1 1.5644 4.1674 2.0544 34 1 0.4038 4.2815 -0.1165 35 1 1.8658 5.2969 -0.1592 36 1 2.8608 2.0427 -4.6686 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306270084.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:07 Heat of formation + Delta-G solvation = -88.435998 kcal Electronic energy + Delta-G solvation = -15687.867130 eV Core-core repulsion = 13363.426581 eV Total energy + Delta-G solvation = -2324.440549 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.67380 -35.85226 -34.28518 -33.84168 -32.54596 -30.35340 -27.43527 -25.51900 -24.00314 -23.32103 -21.90511 -19.45589 -18.54954 -16.67077 -16.42289 -15.91393 -15.84276 -15.34014 -15.16666 -14.41350 -14.18480 -13.83296 -13.44267 -12.95287 -12.79478 -12.77103 -12.65916 -12.54608 -12.34995 -12.15246 -11.95304 -11.95120 -11.69210 -11.37084 -11.15519 -10.91895 -10.68240 -10.24978 -9.44907 -8.04536 -6.23682 1.42418 1.44378 1.51257 2.44765 3.11961 3.71416 4.00888 4.05900 4.16598 4.27432 4.41216 4.50377 4.54296 4.68710 4.75567 4.79578 4.86528 4.95570 5.02320 5.08355 5.14607 5.18991 5.19249 5.25651 5.29734 5.39667 5.52816 5.55396 5.64019 5.71853 5.84564 6.00657 6.36167 6.77578 7.40553 7.52953 8.99837 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.031127 B = 0.011960 C = 0.010994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.316376 B = 2340.510375 C = 2546.289150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 C 0.099 3.901 4 C -0.133 4.133 5 C -0.158 4.158 6 C -0.135 4.135 7 C -0.117 4.117 8 C -0.140 4.140 9 C 0.221 3.779 10 H -0.011 1.011 11 C -0.556 4.556 12 H 0.054 0.946 13 C 0.033 3.967 14 N -0.879 5.879 15 Si 0.951 3.049 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.276 1.276 19 O -0.368 6.368 20 H 0.061 0.939 21 H 0.062 0.938 22 H 0.032 0.968 23 H 0.049 0.951 24 H 0.088 0.912 25 H 0.045 0.955 26 H 0.075 0.925 27 H 0.040 0.960 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.446 -3.243 9.036 9.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.141 4.141 3 C 0.059 3.941 4 C -0.171 4.171 5 C -0.215 4.215 6 C -0.173 4.173 7 C -0.154 4.154 8 C -0.178 4.178 9 C 0.165 3.835 10 H 0.007 0.993 11 C -0.594 4.594 12 H 0.073 0.927 13 C -0.170 4.170 14 N -0.515 5.515 15 Si 0.777 3.223 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.201 1.201 19 O -0.287 6.287 20 H 0.080 0.920 21 H 0.081 0.919 22 H 0.051 0.949 23 H 0.068 0.932 24 H 0.106 0.894 25 H 0.063 0.937 26 H 0.093 0.907 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.470 -3.460 8.787 9.455 hybrid contribution -0.016 0.609 -1.011 1.180 sum -0.486 -2.851 7.776 8.296 Atomic orbital electron populations 1.21656 0.95577 1.01118 1.01400 1.21486 0.96544 0.94247 1.01798 1.21596 0.92335 0.93128 0.87066 1.21964 0.96693 0.99904 0.98516 1.21833 0.99272 0.99725 1.00686 1.22201 1.01120 0.95693 0.98279 1.21619 1.00478 0.96245 0.97042 1.22139 0.99998 0.99275 0.96405 1.19418 0.92443 0.79775 0.91867 0.99331 1.21374 1.32901 1.13348 0.91742 0.92743 1.25740 0.94491 0.94845 1.01918 1.70037 1.34490 1.21090 1.25901 0.85752 0.78697 0.78638 0.79252 1.19496 1.20795 1.20126 1.88255 1.73156 1.26705 1.40601 0.91992 0.91864 0.94882 0.93185 0.89403 0.93674 0.90650 0.94131 0.92949 0.91070 0.89735 0.91773 0.92429 0.90674 0.93572 0.92803 0.93251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.52 9.30 71.98 0.67 -3.85 16 2 C -0.10 -3.50 4.79 30.60 0.15 -3.36 16 3 C 0.10 3.84 0.47 -10.70 -0.01 3.83 16 4 C -0.13 -5.02 4.31 30.60 0.13 -4.89 16 5 C -0.16 -6.41 9.27 71.98 0.67 -5.74 16 6 C -0.14 -4.46 4.63 30.75 0.14 -4.32 16 7 C -0.12 -3.99 5.71 30.71 0.18 -3.81 16 8 C -0.14 -6.02 5.36 30.68 0.16 -5.86 16 9 C 0.22 11.46 2.17 29.88 0.06 11.53 16 10 H -0.01 -0.61 6.30 -2.39 -0.02 -0.62 16 11 C -0.56 -31.85 8.79 25.60 0.23 -31.62 16 12 H 0.05 3.07 7.74 -2.91 -0.02 3.04 16 13 C 0.03 1.90 5.40 84.66 0.46 2.35 16 14 N -0.88 -51.14 11.42 21.45 0.24 -50.90 16 15 Si 0.95 44.43 29.54 68.60 2.03 46.46 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 17 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 18 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 19 O -0.37 -18.50 7.82 -148.98 -1.17 -19.66 16 20 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 21 H 0.06 1.79 6.71 -2.39 -0.02 1.78 16 22 H 0.03 1.29 7.53 -2.38 -0.02 1.27 16 23 H 0.05 1.87 6.57 -2.39 -0.02 1.85 16 24 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 25 H 0.04 1.86 4.97 -2.39 -0.01 1.84 16 26 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.05 1.90 6.75 -2.39 -0.02 1.89 16 29 H 0.07 3.56 6.10 -2.39 -0.01 3.54 16 30 H 0.08 2.25 8.14 -2.39 -0.02 2.24 16 31 H 0.06 2.13 6.44 -2.39 -0.02 2.11 16 32 H 0.06 1.95 6.66 -2.39 -0.02 1.94 16 33 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 35 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 36 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 Total: -1.00 -61.81 269.53 4.98 -56.83 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 1.03 Total: 13.00 kcal Atomic # 6 Polarization: -48.57 SS G_CDS: 2.84 Total: -45.73 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.24 Total: -50.90 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -1.17 Total: -19.66 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -61.81 4.98 -56.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306270084.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.602 kcal (2) G-P(sol) polarization free energy of solvation -61.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds