Wall clock time and date at job start Mon Mar 30 2020 03:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47382 * 2 1 4 4 C 1.53001 * 109.47153 * 180.02562 * 3 2 1 5 5 C 1.52998 * 110.35459 * 307.14267 * 4 3 2 6 6 C 1.54951 * 110.30970 * 185.00111 * 4 3 2 7 7 C 1.55298 * 100.94218 * 204.64174 * 6 4 3 8 8 C 1.54380 * 102.25720 * 34.13300 * 7 6 4 9 9 C 1.52999 * 109.83288 * 219.04031 * 8 7 6 10 10 C 1.50694 * 109.83058 * 98.15685 * 8 7 6 11 11 H 1.08000 * 120.00563 * 0.02562 * 10 8 7 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 8 7 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 O 1.43242 * 107.58474 * 338.64398 * 8 7 6 19 19 H 1.09000 * 109.47343 * 180.02562 * 1 2 3 20 20 H 1.09003 * 109.47162 * 299.99659 * 1 2 3 21 21 H 1.08995 * 109.47425 * 59.99339 * 1 2 3 22 22 H 1.09011 * 109.46903 * 240.00300 * 2 1 3 23 23 H 1.08995 * 109.47425 * 120.00661 * 2 1 3 24 24 H 1.08998 * 109.46938 * 60.00464 * 3 2 1 25 25 H 1.08999 * 109.46970 * 300.00452 * 3 2 1 26 26 H 1.09000 * 109.47293 * 297.85722 * 5 4 3 27 27 H 1.09002 * 109.46733 * 57.85871 * 5 4 3 28 28 H 1.09000 * 109.47406 * 177.85605 * 5 4 3 29 29 H 1.09000 * 111.12712 * 86.71830 * 6 4 3 30 30 H 1.08998 * 111.15995 * 322.57809 * 6 4 3 31 31 H 1.09003 * 110.84663 * 275.94458 * 7 6 4 32 32 H 1.09005 * 111.02559 * 152.40305 * 7 6 4 33 33 H 1.08995 * 109.46844 * 299.81443 * 9 8 7 34 34 H 1.09004 * 109.46826 * 59.81395 * 9 8 7 35 35 H 1.09000 * 109.47245 * 179.80582 * 9 8 7 36 36 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.1026 0.5761 1.1424 6 6 4.1079 2.8900 0.1260 7 6 5.5097 2.7417 -0.5257 8 6 5.2506 1.6883 -1.6242 9 6 6.4394 0.7294 -1.7147 10 6 5.0443 2.3731 -2.9506 11 1 5.0915 3.4501 -3.0156 12 6 4.7953 1.6246 -4.0816 13 7 4.7383 0.3130 -4.0027 14 14 4.5389 2.4735 -5.7256 15 1 3.0960 2.7733 -5.9083 16 1 5.3152 3.7391 -5.7557 17 1 5.0018 1.5828 -6.8200 18 8 4.0680 0.9662 -1.2610 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 1.8933 -0.5138 -0.8901 23 1 1.8933 -0.5139 0.8899 24 1 1.6767 1.9562 0.8900 25 1 1.6766 1.9563 -0.8899 26 1 3.7792 0.9936 2.0959 27 1 3.7163 -0.4380 1.0401 28 1 5.1918 0.5554 1.1056 29 1 4.1902 3.1885 1.1711 30 1 3.4872 3.5907 -0.4324 31 1 6.2375 2.3758 0.1986 32 1 5.8397 3.6843 -0.9624 33 1 7.3404 1.2903 -1.9627 34 1 6.5756 0.2283 -0.7563 35 1 6.2489 -0.0135 -2.4892 36 1 4.5628 -0.2135 -4.7982 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306313632.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:43 Heat of formation + Delta-G solvation = -84.546818 kcal Electronic energy + Delta-G solvation = -15399.006837 eV Core-core repulsion = 13074.734935 eV Total energy + Delta-G solvation = -2324.271902 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.54398 -36.39950 -34.50197 -32.70224 -32.17572 -29.35574 -27.62170 -27.10787 -24.57128 -22.19263 -21.43193 -20.21372 -18.60518 -16.70146 -16.39714 -16.05614 -15.50383 -15.05658 -14.64440 -14.40785 -13.99347 -13.65716 -13.22689 -13.19256 -12.91946 -12.81790 -12.70926 -12.50575 -12.39120 -12.18802 -12.10455 -11.95114 -11.77884 -11.41106 -11.09394 -10.83384 -10.81438 -10.52704 -9.62506 -7.98258 -6.20696 1.39707 1.40848 1.50014 2.44431 3.14163 3.59149 3.94843 4.01587 4.23595 4.28967 4.35710 4.54509 4.57698 4.70134 4.78259 4.87855 4.90569 4.95113 4.98554 5.07797 5.10957 5.14653 5.18700 5.20542 5.35716 5.41806 5.44856 5.53691 5.62000 5.70168 5.76036 6.15846 6.41380 6.74616 7.27961 7.55746 9.01746 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.027965 B = 0.011893 C = 0.009917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.997153 B = 2353.820818 C = 2822.811334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 C -0.100 4.100 4 C 0.082 3.918 5 C -0.151 4.151 6 C -0.132 4.132 7 C -0.138 4.138 8 C 0.216 3.784 9 C -0.134 4.134 10 C -0.547 4.547 11 H 0.050 0.950 12 C 0.033 3.967 13 N -0.889 5.889 14 Si 0.944 3.056 15 H -0.281 1.281 16 H -0.267 1.267 17 H -0.283 1.283 18 O -0.375 6.375 19 H 0.059 0.941 20 H 0.069 0.931 21 H 0.042 0.958 22 H 0.031 0.969 23 H 0.072 0.928 24 H 0.089 0.911 25 H 0.039 0.961 26 H 0.082 0.918 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.036 0.964 34 H 0.026 0.974 35 H 0.057 0.943 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.017 1.868 9.681 10.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C -0.137 4.137 4 C 0.042 3.958 5 C -0.209 4.209 6 C -0.169 4.169 7 C -0.176 4.176 8 C 0.179 3.821 9 C -0.192 4.192 10 C -0.585 4.585 11 H 0.068 0.932 12 C -0.169 4.169 13 N -0.527 5.527 14 Si 0.770 3.230 15 H -0.207 1.207 16 H -0.192 1.192 17 H -0.208 1.208 18 O -0.295 6.295 19 H 0.078 0.922 20 H 0.088 0.912 21 H 0.061 0.939 22 H 0.050 0.950 23 H 0.091 0.909 24 H 0.107 0.893 25 H 0.058 0.942 26 H 0.100 0.900 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.045 0.955 35 H 0.076 0.924 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.120 1.541 9.453 10.426 hybrid contribution 0.157 0.388 -1.274 1.341 sum -3.963 1.929 8.179 9.291 Atomic orbital electron populations 1.21739 0.94767 1.01868 1.01806 1.21471 0.96372 0.96589 1.01188 1.21597 0.93281 0.97436 1.01404 1.22460 0.94208 0.92637 0.86479 1.22187 1.00514 1.00171 0.97984 1.23124 0.95951 0.96790 1.01038 1.23096 0.97230 0.99654 0.97626 1.19630 0.83078 0.87738 0.91702 1.21918 0.97376 1.00521 0.99382 1.21626 1.50594 0.92546 0.93744 0.93180 1.25693 0.94103 0.95299 1.01833 1.70110 1.48014 1.05496 1.29056 0.85802 0.78211 0.78805 0.80195 1.20658 1.19160 1.20845 1.88697 1.44102 1.61427 1.35319 0.92210 0.91155 0.93909 0.94980 0.90912 0.89278 0.94174 0.89958 0.92593 0.93752 0.88823 0.92295 0.91566 0.92039 0.94463 0.95477 0.92371 0.93520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 9.91 71.98 0.71 -3.07 16 2 C -0.12 -3.87 5.33 30.59 0.16 -3.71 16 3 C -0.10 -3.43 4.58 30.59 0.14 -3.28 16 4 C 0.08 3.18 0.86 -10.13 -0.01 3.17 16 5 C -0.15 -4.93 8.35 71.98 0.60 -4.33 16 6 C -0.13 -4.75 6.05 32.05 0.19 -4.56 16 7 C -0.14 -5.71 5.69 31.85 0.18 -5.53 16 8 C 0.22 10.98 0.82 -11.07 -0.01 10.97 16 9 C -0.13 -6.76 8.52 71.98 0.61 -6.14 16 10 C -0.55 -30.86 8.23 25.60 0.21 -30.65 16 11 H 0.05 2.79 7.49 -2.91 -0.02 2.77 16 12 C 0.03 1.85 5.26 84.66 0.45 2.30 16 13 N -0.89 -53.05 10.92 21.45 0.23 -52.81 16 14 Si 0.94 44.76 29.54 68.60 2.03 46.79 16 15 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 17 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 18 O -0.38 -19.27 9.33 -148.98 -1.39 -20.66 16 19 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 20 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 21 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.03 1.29 7.99 -2.38 -0.02 1.27 16 23 H 0.07 2.11 6.35 -2.39 -0.02 2.10 16 24 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.06 1.84 6.29 -2.39 -0.02 1.82 16 28 H 0.04 1.51 7.31 -2.39 -0.02 1.49 16 29 H 0.09 2.67 8.03 -2.39 -0.02 2.65 16 30 H 0.06 2.23 8.06 -2.39 -0.02 2.21 16 31 H 0.07 2.46 7.53 -2.39 -0.02 2.44 16 32 H 0.06 2.53 7.61 -2.38 -0.02 2.51 16 33 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.03 1.21 7.93 -2.38 -0.02 1.19 16 35 H 0.06 3.29 6.02 -2.39 -0.01 3.28 16 36 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -63.65 280.61 5.13 -58.52 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 1.02 Total: 13.00 kcal Atomic # 6 Polarization: -48.07 SS G_CDS: 3.24 Total: -44.83 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.23 Total: -52.81 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -1.39 Total: -20.66 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -63.65 5.13 -58.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306313632.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.031 kcal (2) G-P(sol) polarization free energy of solvation -63.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds