Wall clock time and date at job start Mon Mar 30 2020 03:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47272 * 2 1 4 4 C 1.52995 * 109.47272 * 179.97438 * 3 2 1 5 5 C 1.53002 * 110.27173 * 57.91263 * 4 3 2 6 6 C 1.54944 * 110.30712 * 180.02562 * 4 3 2 7 7 C 1.55311 * 100.93989 * 155.36335 * 6 4 3 8 8 C 1.54380 * 102.25408 * 325.86474 * 7 6 4 9 9 C 1.52999 * 109.83238 * 261.75572 * 8 7 6 10 10 C 1.50690 * 109.83245 * 140.86844 * 8 7 6 11 11 H 1.08006 * 120.00105 * 4.65408 * 10 8 7 12 12 C 1.37874 * 120.00285 * 184.64831 * 10 8 7 13 13 N 1.31521 * 119.99893 * 6.22629 * 12 10 8 14 14 Si 1.86803 * 120.00240 * 186.22306 * 12 10 8 15 15 H 1.48501 * 109.46969 * 85.17257 * 14 12 10 16 16 H 1.48497 * 109.47234 * 205.17321 * 14 12 10 17 17 H 1.48501 * 109.46926 * 325.17475 * 14 12 10 18 18 O 1.43241 * 107.58795 * 21.35739 * 8 7 6 19 19 H 1.09001 * 109.46997 * 179.97438 * 1 2 3 20 20 H 1.08995 * 109.47105 * 299.99631 * 1 2 3 21 21 H 1.08997 * 109.47569 * 59.99534 * 1 2 3 22 22 H 1.09007 * 109.47106 * 240.00789 * 2 1 3 23 23 H 1.08997 * 109.47569 * 120.00466 * 2 1 3 24 24 H 1.09007 * 109.46411 * 60.00363 * 3 2 1 25 25 H 1.08997 * 109.47204 * 300.00690 * 3 2 1 26 26 H 1.09007 * 109.46735 * 182.08687 * 5 4 3 27 27 H 1.08996 * 109.47159 * 302.08340 * 5 4 3 28 28 H 1.08999 * 109.47380 * 62.09216 * 5 4 3 29 29 H 1.08996 * 111.13029 * 37.44283 * 6 4 3 30 30 H 1.09000 * 111.12656 * 273.27724 * 6 4 3 31 31 H 1.09005 * 110.84585 * 207.67891 * 7 6 4 32 32 H 1.08997 * 111.02359 * 84.13578 * 7 6 4 33 33 H 1.08991 * 109.47201 * 293.53288 * 9 8 7 34 34 H 1.09002 * 109.47310 * 53.53290 * 9 8 7 35 35 H 1.09003 * 109.47291 * 173.53087 * 9 8 7 36 36 H 0.97002 * 119.99670 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.1006 0.6799 -1.2150 6 6 4.1077 2.8957 0.0013 7 6 5.5096 2.6909 0.6375 8 6 5.2506 1.5453 1.6394 9 6 5.0434 2.1196 3.0423 10 6 6.4205 0.5955 1.6437 11 1 7.2999 0.8193 1.0580 12 6 6.3684 -0.5591 2.3954 13 7 5.2551 -0.8937 3.0105 14 14 7.8790 -1.6484 2.5401 15 1 8.7471 -1.1478 3.6361 16 1 7.4584 -3.0410 2.8386 17 1 8.6325 -1.6223 1.2607 18 8 4.0681 0.8577 1.2144 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5137 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 1.8933 -0.5137 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 1.6767 1.9563 0.8901 25 1 1.6766 1.9564 -0.8899 26 1 5.1899 0.6562 -1.1819 27 1 3.7144 -0.3393 -1.2015 28 1 3.7757 1.1796 -2.1276 29 1 3.4868 3.5441 0.6193 30 1 4.1900 3.2846 -1.0136 31 1 5.8361 3.5927 1.1554 32 1 6.2401 2.3912 -0.1140 33 1 5.9727 2.5692 3.3918 34 1 4.2614 2.8785 3.0124 35 1 4.7482 1.3204 3.7222 36 1 5.2184 -1.7062 3.5390 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306313637.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:53 Heat of formation + Delta-G solvation = -68.609463 kcal Electronic energy + Delta-G solvation = -15416.320584 eV Core-core repulsion = 13092.739778 eV Total energy + Delta-G solvation = -2323.580806 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.83370 -34.77599 -32.55992 -30.96504 -30.55723 -27.40696 -26.26516 -25.09270 -23.06994 -20.78750 -19.52232 -18.58821 -16.33661 -15.01019 -14.73041 -14.52325 -13.98718 -13.45913 -12.90261 -12.56603 -12.26286 -11.97992 -11.75609 -11.49766 -11.31901 -11.14154 -11.06592 -10.84553 -10.76104 -10.47377 -10.36845 -10.30654 -9.94841 -9.91274 -9.50745 -9.22718 -8.92064 -8.40333 -7.71329 -5.86156 -3.99795 3.34418 3.41308 3.43498 4.49308 5.01435 5.33173 5.47612 5.51452 5.62179 5.70930 5.81468 5.98930 6.00514 6.17536 6.24452 6.28533 6.32034 6.45160 6.48941 6.53139 6.61757 6.71382 6.77405 6.85521 6.94060 6.98905 7.02608 7.15469 7.25100 7.47932 7.88044 8.07105 8.45814 8.76079 9.20505 9.69824 11.17277 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.030869 B = 0.011260 C = 0.009903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.839784 B = 2486.061667 C = 2826.619405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.103 4.103 4 C 0.099 3.901 5 C -0.153 4.153 6 C -0.148 4.148 7 C -0.140 4.140 8 C 0.229 3.771 9 C -0.132 4.132 10 C -0.536 4.536 11 H 0.056 0.944 12 C 0.083 3.917 13 N -0.854 5.854 14 Si 0.881 3.119 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.276 1.276 18 O -0.331 6.331 19 H 0.047 0.953 20 H 0.049 0.951 21 H 0.045 0.955 22 H 0.057 0.943 23 H 0.077 0.923 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.040 0.960 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.038 0.962 34 H 0.012 0.988 35 H 0.073 0.927 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.172 4.216 -5.388 8.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.141 4.141 4 C 0.059 3.941 5 C -0.210 4.210 6 C -0.186 4.186 7 C -0.178 4.178 8 C 0.191 3.809 9 C -0.190 4.190 10 C -0.574 4.574 11 H 0.074 0.926 12 C -0.123 4.123 13 N -0.490 5.490 14 Si 0.708 3.292 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.201 1.201 18 O -0.251 6.251 19 H 0.066 0.934 20 H 0.069 0.931 21 H 0.064 0.936 22 H 0.076 0.924 23 H 0.096 0.904 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.031 0.969 35 H 0.092 0.908 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.355 3.903 -5.150 8.392 hybrid contribution 0.982 -0.450 -0.033 1.081 sum -4.372 3.453 -5.183 7.610 Atomic orbital electron populations 1.21788 0.97160 1.00802 1.00893 1.21502 0.94055 0.97345 1.03057 1.21622 0.94850 0.96918 1.00663 1.22038 0.92348 0.90833 0.88926 1.22145 1.02134 1.00408 0.96317 1.23249 0.97932 0.97494 0.99913 1.23196 0.95504 0.99586 0.99507 1.19574 0.84236 0.87815 0.89240 1.21895 0.97649 0.99012 1.00460 1.21243 1.00322 1.06593 1.29240 0.92602 1.24972 0.95104 0.97152 0.95072 1.70073 1.24599 1.23615 1.30678 0.86821 0.83869 0.80047 0.78415 1.20662 1.21330 1.20066 1.88797 1.43445 1.56420 1.36392 0.93376 0.93144 0.93622 0.92389 0.90414 0.92228 0.92717 0.91976 0.92433 0.94085 0.91925 0.92211 0.92638 0.91871 0.94343 0.96894 0.90781 0.93360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 37.16 0.37 -1.72 16 2 C -0.12 -2.10 5.44 -26.73 -0.15 -2.25 16 3 C -0.10 -1.80 4.55 -26.73 -0.12 -1.92 16 4 C 0.10 2.01 0.85 -89.60 -0.08 1.94 16 5 C -0.15 -2.94 8.49 37.16 0.32 -2.62 16 6 C -0.15 -2.76 6.05 -24.48 -0.15 -2.91 16 7 C -0.14 -2.97 5.69 -24.78 -0.14 -3.11 16 8 C 0.23 5.75 0.82 -91.05 -0.07 5.67 16 9 C -0.13 -3.24 8.48 37.16 0.32 -2.92 16 10 C -0.54 -14.82 8.17 -34.45 -0.28 -15.11 16 11 H 0.06 1.53 7.56 -52.48 -0.40 1.14 16 12 C 0.08 2.31 5.24 -17.82 -0.09 2.22 16 13 N -0.85 -24.78 11.26 55.43 0.62 -24.16 16 14 Si 0.88 21.42 29.54 -169.99 -5.02 16.40 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 O -0.33 -8.39 8.70 -35.23 -0.31 -8.70 16 19 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.06 0.97 6.41 -51.93 -0.33 0.64 16 23 H 0.08 1.59 7.84 -51.93 -0.41 1.18 16 24 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 1.30 7.54 -51.92 -0.39 0.91 16 27 H 0.06 1.12 6.36 -51.93 -0.33 0.79 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 1.12 8.06 -51.93 -0.42 0.70 16 30 H 0.06 0.97 8.03 -51.93 -0.42 0.56 16 31 H 0.05 1.09 7.82 -51.93 -0.41 0.68 16 32 H 0.06 1.34 7.37 -51.93 -0.38 0.96 16 33 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 2.00 6.80 -51.93 -0.35 1.64 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 281.75 15.07 4.25 4.25 Total: -1.00 -28.99 281.75 -6.89 -35.89 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.35 Total: -0.95 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: -0.08 Total: -22.73 kcal Atomic # 7 Polarization: -24.78 SS G_CDS: 0.62 Total: -24.16 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -0.31 Total: -8.70 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.99 -6.89 -35.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306313637.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.721 kcal (2) G-P(sol) polarization free energy of solvation -28.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds