Wall clock time and date at job start Mon Mar 30 2020 03:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47272 * 2 1 4 4 C 1.52995 * 109.47272 * 179.97438 * 3 2 1 5 5 C 1.53002 * 110.27173 * 57.91263 * 4 3 2 6 6 C 1.54944 * 110.30712 * 180.02562 * 4 3 2 7 7 C 1.55311 * 100.93989 * 155.36335 * 6 4 3 8 8 C 1.54380 * 102.25408 * 325.86474 * 7 6 4 9 9 C 1.52999 * 109.83238 * 261.75572 * 8 7 6 10 10 C 1.50690 * 109.83245 * 140.86844 * 8 7 6 11 11 H 1.08006 * 120.00105 * 4.65408 * 10 8 7 12 12 C 1.37874 * 120.00285 * 184.64831 * 10 8 7 13 13 N 1.31521 * 119.99893 * 6.22629 * 12 10 8 14 14 Si 1.86803 * 120.00240 * 186.22306 * 12 10 8 15 15 H 1.48501 * 109.46969 * 85.17257 * 14 12 10 16 16 H 1.48497 * 109.47234 * 205.17321 * 14 12 10 17 17 H 1.48501 * 109.46926 * 325.17475 * 14 12 10 18 18 O 1.43241 * 107.58795 * 21.35739 * 8 7 6 19 19 H 1.09001 * 109.46997 * 179.97438 * 1 2 3 20 20 H 1.08995 * 109.47105 * 299.99631 * 1 2 3 21 21 H 1.08997 * 109.47569 * 59.99534 * 1 2 3 22 22 H 1.09007 * 109.47106 * 240.00789 * 2 1 3 23 23 H 1.08997 * 109.47569 * 120.00466 * 2 1 3 24 24 H 1.09007 * 109.46411 * 60.00363 * 3 2 1 25 25 H 1.08997 * 109.47204 * 300.00690 * 3 2 1 26 26 H 1.09007 * 109.46735 * 182.08687 * 5 4 3 27 27 H 1.08996 * 109.47159 * 302.08340 * 5 4 3 28 28 H 1.08999 * 109.47380 * 62.09216 * 5 4 3 29 29 H 1.08996 * 111.13029 * 37.44283 * 6 4 3 30 30 H 1.09000 * 111.12656 * 273.27724 * 6 4 3 31 31 H 1.09005 * 110.84585 * 207.67891 * 7 6 4 32 32 H 1.08997 * 111.02359 * 84.13578 * 7 6 4 33 33 H 1.08991 * 109.47201 * 293.53288 * 9 8 7 34 34 H 1.09002 * 109.47310 * 53.53290 * 9 8 7 35 35 H 1.09003 * 109.47291 * 173.53087 * 9 8 7 36 36 H 0.97002 * 119.99670 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.1006 0.6799 -1.2150 6 6 4.1077 2.8957 0.0013 7 6 5.5096 2.6909 0.6375 8 6 5.2506 1.5453 1.6394 9 6 5.0434 2.1196 3.0423 10 6 6.4205 0.5955 1.6437 11 1 7.2999 0.8193 1.0580 12 6 6.3684 -0.5591 2.3954 13 7 5.2551 -0.8937 3.0105 14 14 7.8790 -1.6484 2.5401 15 1 8.7471 -1.1478 3.6361 16 1 7.4584 -3.0410 2.8386 17 1 8.6325 -1.6223 1.2607 18 8 4.0681 0.8577 1.2144 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5137 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 1.8933 -0.5137 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 1.6767 1.9563 0.8901 25 1 1.6766 1.9564 -0.8899 26 1 5.1899 0.6562 -1.1819 27 1 3.7144 -0.3393 -1.2015 28 1 3.7757 1.1796 -2.1276 29 1 3.4868 3.5441 0.6193 30 1 4.1900 3.2846 -1.0136 31 1 5.8361 3.5927 1.1554 32 1 6.2401 2.3912 -0.1140 33 1 5.9727 2.5692 3.3918 34 1 4.2614 2.8785 3.0124 35 1 4.7482 1.3204 3.7222 36 1 5.2184 -1.7062 3.5390 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306313637.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:53 Heat of formation + Delta-G solvation = -84.709321 kcal Electronic energy + Delta-G solvation = -15417.018726 eV Core-core repulsion = 13092.739778 eV Total energy + Delta-G solvation = -2324.278949 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.51388 -36.34718 -34.43330 -32.68650 -32.28159 -29.08947 -27.74928 -27.08011 -24.67727 -22.23420 -21.28285 -20.23128 -18.34685 -16.72402 -16.42306 -16.21661 -15.51807 -15.20324 -14.42165 -14.19031 -13.85287 -13.63622 -13.44952 -13.09749 -12.94946 -12.79210 -12.66850 -12.53788 -12.49843 -12.27104 -12.03573 -11.87427 -11.84437 -11.35031 -11.11228 -10.82583 -10.75231 -10.51832 -9.58152 -7.97272 -6.17062 1.39919 1.40895 1.49239 2.45507 3.18188 3.58432 3.96769 4.00981 4.25329 4.33850 4.38146 4.50848 4.64780 4.73869 4.77643 4.88011 4.93067 4.97983 4.99295 5.04837 5.08027 5.11176 5.22164 5.22664 5.30337 5.42516 5.44326 5.57561 5.64300 5.73211 5.80405 6.09356 6.40185 6.75213 7.31533 7.58612 9.04657 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.030869 B = 0.011260 C = 0.009903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.839784 B = 2486.061667 C = 2826.619405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 C -0.097 4.097 4 C 0.082 3.918 5 C -0.147 4.147 6 C -0.136 4.136 7 C -0.137 4.137 8 C 0.214 3.786 9 C -0.125 4.125 10 C -0.552 4.552 11 H 0.049 0.951 12 C 0.035 3.965 13 N -0.883 5.883 14 Si 0.939 3.061 15 H -0.274 1.274 16 H -0.288 1.288 17 H -0.272 1.272 18 O -0.365 6.365 19 H 0.054 0.946 20 H 0.050 0.950 21 H 0.069 0.931 22 H 0.059 0.941 23 H 0.032 0.968 24 H 0.052 0.948 25 H 0.089 0.911 26 H 0.036 0.964 27 H 0.045 0.955 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.041 0.959 34 H 0.032 0.968 35 H 0.040 0.960 36 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.781 5.362 -6.885 10.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.157 4.157 3 C -0.135 4.135 4 C 0.042 3.958 5 C -0.204 4.204 6 C -0.173 4.173 7 C -0.175 4.175 8 C 0.176 3.824 9 C -0.183 4.183 10 C -0.590 4.590 11 H 0.067 0.933 12 C -0.168 4.168 13 N -0.520 5.520 14 Si 0.765 3.235 15 H -0.199 1.199 16 H -0.213 1.213 17 H -0.196 1.196 18 O -0.285 6.285 19 H 0.073 0.927 20 H 0.069 0.931 21 H 0.088 0.912 22 H 0.078 0.922 23 H 0.051 0.949 24 H 0.071 0.929 25 H 0.108 0.892 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.957 5.058 -6.654 10.264 hybrid contribution 1.162 -0.796 0.401 1.465 sum -4.795 4.263 -6.253 8.959 Atomic orbital electron populations 1.21726 0.94431 1.01730 1.02061 1.21433 0.96449 0.96947 1.00908 1.21608 0.92783 0.97127 1.01938 1.22443 0.94152 0.91803 0.87435 1.22085 1.00363 1.00261 0.97691 1.23217 0.95911 0.96541 1.01673 1.23092 0.97169 0.98561 0.98675 1.19649 0.83704 0.88609 0.90391 1.21786 0.98318 0.98345 0.99815 1.21628 1.01235 1.07300 1.28788 0.93277 1.25661 0.97513 0.98577 0.95032 1.70218 1.26311 1.23937 1.31548 0.85898 0.80829 0.78256 0.78521 1.19914 1.21339 1.19649 1.88739 1.43371 1.57710 1.38672 0.92691 0.93125 0.91216 0.92200 0.94948 0.92896 0.89246 0.94479 0.93591 0.90384 0.90847 0.89100 0.91279 0.92521 0.93988 0.94944 0.94071 0.93723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.91 71.98 0.71 -2.95 16 2 C -0.12 -4.01 5.44 30.59 0.17 -3.85 16 3 C -0.10 -3.18 4.55 30.59 0.14 -3.04 16 4 C 0.08 3.19 0.85 -10.13 -0.01 3.18 16 5 C -0.15 -5.43 8.49 71.98 0.61 -4.82 16 6 C -0.14 -4.66 6.05 32.05 0.19 -4.47 16 7 C -0.14 -5.60 5.69 31.86 0.18 -5.42 16 8 C 0.21 10.78 0.82 -11.07 -0.01 10.77 16 9 C -0.12 -6.14 8.48 71.98 0.61 -5.53 16 10 C -0.55 -30.93 8.17 25.60 0.21 -30.72 16 11 H 0.05 2.73 7.56 -2.91 -0.02 2.71 16 12 C 0.03 1.97 5.24 84.65 0.44 2.42 16 13 N -0.88 -52.80 11.26 21.45 0.24 -52.56 16 14 Si 0.94 44.70 29.54 68.60 2.03 46.73 16 15 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 16 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 17 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 18 O -0.36 -18.67 8.70 -148.98 -1.30 -19.97 16 19 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 20 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 21 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.06 1.94 6.41 -2.38 -0.02 1.93 16 23 H 0.03 1.35 7.84 -2.39 -0.02 1.34 16 24 H 0.05 1.79 8.14 -2.38 -0.02 1.78 16 25 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.04 1.52 7.54 -2.38 -0.02 1.51 16 27 H 0.05 1.76 6.36 -2.39 -0.02 1.75 16 28 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.07 2.36 8.06 -2.39 -0.02 2.34 16 30 H 0.09 2.56 8.03 -2.39 -0.02 2.54 16 31 H 0.07 2.58 7.82 -2.38 -0.02 2.56 16 32 H 0.06 2.35 7.37 -2.39 -0.02 2.33 16 33 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.04 2.26 6.80 -2.39 -0.02 2.25 16 36 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -63.45 281.75 5.24 -58.21 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 1.01 Total: 12.02 kcal Atomic # 6 Polarization: -47.68 SS G_CDS: 3.25 Total: -44.43 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: 0.24 Total: -52.56 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -1.30 Total: -19.97 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -63.45 5.24 -58.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306313637.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.501 kcal (2) G-P(sol) polarization free energy of solvation -63.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds