Wall clock time and date at job start Mon Mar 30 2020 03:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47048 * 2 1 4 4 C 1.53000 * 109.46714 * 119.99783 * 2 1 3 5 5 C 1.53004 * 109.47214 * 65.99590 * 4 2 1 6 6 H 1.09002 * 109.47981 * 305.13882 * 5 4 2 7 7 C 1.53095 * 109.48893 * 185.10848 * 5 4 2 8 8 C 1.53187 * 109.15841 * 182.40493 * 7 5 4 9 9 C 1.53177 * 109.03467 * 56.98197 * 8 7 5 10 10 C 1.53090 * 109.16333 * 303.01476 * 9 8 7 11 11 H 1.09000 * 109.48896 * 177.59833 * 10 9 8 12 12 C 1.50705 * 109.48304 * 297.63118 * 10 9 8 13 13 H 1.07998 * 119.99523 * 5.17690 * 12 10 9 14 14 C 1.37875 * 120.00105 * 185.18015 * 12 10 9 15 15 N 1.31522 * 119.99899 * 355.78874 * 14 12 10 16 16 Si 1.86797 * 120.00089 * 175.78616 * 14 12 10 17 17 H 1.48497 * 109.46826 * 90.00071 * 16 14 12 18 18 H 1.48504 * 109.47251 * 330.00175 * 16 14 12 19 19 H 1.48501 * 109.47140 * 209.99940 * 16 14 12 20 20 O 1.42898 * 109.41547 * 57.61297 * 10 9 8 21 21 H 1.09003 * 109.47177 * 300.00009 * 1 2 3 22 22 H 1.08996 * 109.46869 * 59.99934 * 1 2 3 23 23 H 1.08998 * 109.47309 * 180.02562 * 1 2 3 24 24 H 1.08990 * 109.47507 * 240.00058 * 2 1 3 25 25 H 1.09008 * 109.46845 * 64.92097 * 3 2 1 26 26 H 1.08999 * 109.47048 * 184.91781 * 3 2 1 27 27 H 1.08997 * 109.47274 * 304.91817 * 3 2 1 28 28 H 1.09001 * 109.47310 * 305.99392 * 4 2 1 29 29 H 1.09005 * 109.47429 * 185.99499 * 4 2 1 30 30 H 1.08995 * 109.52094 * 302.30770 * 7 5 4 31 31 H 1.08999 * 109.52345 * 62.49896 * 7 5 4 32 32 H 1.09001 * 109.53688 * 176.84832 * 8 7 5 33 33 H 1.08995 * 109.54276 * 297.02106 * 8 7 5 34 34 H 1.09003 * 109.51504 * 183.11327 * 9 8 7 35 35 H 1.08997 * 109.52638 * 62.92638 * 9 8 7 36 36 H 0.96999 * 120.00023 * 5.34056 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6566 -2.2007 1.1763 6 1 0.5803 -2.2905 1.0292 7 6 2.0535 -2.8961 2.4812 8 6 1.7214 -4.3879 2.3769 9 6 2.4439 -4.9767 1.1613 10 6 2.0320 -4.2009 -0.0925 11 1 2.5754 -4.5879 -0.9545 12 6 0.5507 -4.3613 -0.3188 13 1 -0.0527 -4.8861 0.4070 14 6 -0.0342 -3.8381 -1.4525 15 7 0.6840 -3.1282 -2.2951 16 14 -1.8465 -4.1375 -1.7917 17 1 -2.6512 -3.0517 -1.1764 18 1 -2.2499 -5.4430 -1.2100 19 1 -2.0792 -4.1559 -3.2582 20 8 2.3401 -2.8166 0.0828 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.7504 1.9303 0.9309 26 1 3.1265 1.4438 -0.0881 27 1 1.6066 1.9812 -0.8426 28 1 1.5916 -0.2731 2.1360 29 1 3.1247 -0.6293 1.3047 30 1 3.1232 -2.7719 2.6494 31 1 1.4999 -2.4568 3.3110 32 1 2.0526 -4.8991 3.2809 33 1 0.6452 -4.5146 2.2599 34 1 2.1694 -6.0255 1.0473 35 1 3.5215 -4.8946 1.3029 36 1 1.6403 -3.0373 -2.1605 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306354685.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:29 Heat of formation + Delta-G solvation = -88.232360 kcal Electronic energy + Delta-G solvation = -15524.546313 eV Core-core repulsion = 13200.114594 eV Total energy + Delta-G solvation = -2324.431719 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.53815 -35.53079 -32.78456 -32.24301 -30.31884 -26.69935 -26.45041 -24.66265 -22.49412 -21.39357 -19.18696 -19.13929 -16.59899 -15.08920 -14.90462 -14.12670 -14.02443 -13.72883 -13.56248 -12.92812 -12.72975 -12.23429 -11.79226 -11.65159 -11.41087 -11.34710 -10.89179 -10.81164 -10.75926 -10.38345 -10.16115 -10.12339 -10.07234 -9.90800 -9.61094 -9.22333 -8.51531 -8.38956 -7.68488 -6.27271 -4.07076 3.42904 3.46343 3.61586 4.54167 5.07029 5.34392 5.49709 5.56613 5.65050 5.79136 5.81434 5.85441 6.08864 6.11635 6.19272 6.30769 6.35806 6.37080 6.42088 6.45285 6.48227 6.58430 6.68398 6.79939 6.88483 6.98715 7.04165 7.05555 7.18071 7.31628 7.53895 8.13230 8.44077 8.87547 8.97879 9.73528 11.11238 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.021794 B = 0.015779 C = 0.010795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.424275 B = 1774.034493 C = 2593.120300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 C -0.143 4.143 4 C -0.102 4.102 5 C 0.105 3.895 6 H 0.069 0.931 7 C -0.143 4.143 8 C -0.108 4.108 9 C -0.134 4.134 10 C 0.195 3.805 11 H 0.051 0.949 12 C -0.630 4.630 13 H 0.048 0.952 14 C 0.036 3.964 15 N -0.889 5.889 16 Si 1.058 2.942 17 H -0.288 1.288 18 H -0.290 1.290 19 H -0.285 1.285 20 O -0.390 6.390 21 H 0.038 0.962 22 H 0.045 0.955 23 H 0.068 0.932 24 H 0.085 0.915 25 H 0.045 0.955 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.038 0.962 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.038 0.962 36 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.033 3.913 6.521 7.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 C -0.201 4.201 4 C -0.140 4.140 5 C 0.047 3.953 6 H 0.087 0.913 7 C -0.181 4.181 8 C -0.145 4.145 9 C -0.172 4.172 10 C 0.139 3.861 11 H 0.069 0.931 12 C -0.667 4.667 13 H 0.066 0.934 14 C -0.172 4.172 15 N -0.524 5.524 16 Si 0.887 3.113 17 H -0.215 1.215 18 H -0.216 1.216 19 H -0.210 1.210 20 O -0.310 6.310 21 H 0.057 0.943 22 H 0.064 0.936 23 H 0.087 0.913 24 H 0.104 0.896 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.047 4.380 5.359 6.922 hybrid contribution 1.041 -0.651 1.328 1.808 sum 0.994 3.729 6.687 7.721 Atomic orbital electron populations 1.21807 0.95613 1.02711 0.99746 1.20981 0.95782 0.94491 0.99669 1.21854 1.00356 0.97183 1.00681 1.21628 1.00296 0.94860 0.97207 1.21617 0.97947 0.90079 0.85668 0.91330 1.22151 1.00295 0.96746 0.98904 1.21429 1.01419 0.94988 0.96712 1.22033 0.97620 0.99821 0.97719 1.19832 0.95810 0.78827 0.91617 0.93107 1.22310 0.93675 1.41911 1.08847 0.93364 1.25623 1.05898 0.92861 0.92864 1.70610 1.09552 1.33737 1.38501 0.83720 0.75205 0.76018 0.76332 1.21459 1.21623 1.21034 1.87819 1.67815 1.26190 1.49157 0.94303 0.93559 0.91255 0.89629 0.93612 0.93372 0.93253 0.92425 0.92644 0.92997 0.92933 0.94275 0.91348 0.92692 0.94328 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.97 37.16 0.33 -2.35 16 2 C -0.09 -1.71 2.87 -90.62 -0.26 -1.97 16 3 C -0.14 -2.20 9.19 37.16 0.34 -1.86 16 4 C -0.10 -1.89 4.38 -26.73 -0.12 -2.01 16 5 C 0.11 2.26 2.25 -26.68 -0.06 2.20 16 6 H 0.07 1.65 5.32 -51.93 -0.28 1.38 16 7 C -0.14 -2.72 5.42 -26.59 -0.14 -2.87 16 8 C -0.11 -2.13 5.77 -26.54 -0.15 -2.29 16 9 C -0.13 -2.89 5.60 -26.59 -0.15 -3.04 16 10 C 0.19 4.92 2.72 -27.83 -0.08 4.84 16 11 H 0.05 1.38 7.88 -51.93 -0.41 0.97 16 12 C -0.63 -17.02 6.65 -34.44 -0.23 -17.24 16 13 H 0.05 1.31 6.69 -52.49 -0.35 0.96 16 14 C 0.04 1.00 5.43 -17.82 -0.10 0.91 16 15 N -0.89 -25.94 13.54 55.43 0.75 -25.19 16 16 Si 1.06 24.81 29.91 -169.99 -5.08 19.73 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 O -0.39 -9.66 8.67 -35.23 -0.31 -9.97 16 21 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.07 1.53 6.49 -51.93 -0.34 1.20 16 24 H 0.09 1.92 7.68 -51.93 -0.40 1.52 16 25 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.44 6.76 -51.93 -0.35 1.09 16 34 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.28 8.38 6.59 -40.82 -0.27 8.11 16 LS Contribution 277.81 15.07 4.19 4.19 Total: -1.00 -28.09 277.81 -7.32 -35.41 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -6.26 Total: 1.50 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: -0.61 Total: -25.68 kcal Atomic # 7 Polarization: -25.94 SS G_CDS: 0.75 Total: -25.19 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.31 Total: -9.97 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -5.08 Total: 19.73 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.09 -7.32 -35.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306354685.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.819 kcal (2) G-P(sol) polarization free energy of solvation -28.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds