Wall clock time and date at job start Mon Mar 30 2020 03:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47048 * 2 1 4 4 C 1.53000 * 109.46714 * 119.99783 * 2 1 3 5 5 C 1.53004 * 109.47214 * 65.99590 * 4 2 1 6 6 H 1.09002 * 109.47981 * 305.13882 * 5 4 2 7 7 C 1.53095 * 109.48893 * 185.10848 * 5 4 2 8 8 C 1.53187 * 109.15841 * 182.40493 * 7 5 4 9 9 C 1.53177 * 109.03467 * 56.98197 * 8 7 5 10 10 C 1.53090 * 109.16333 * 303.01476 * 9 8 7 11 11 H 1.09000 * 109.48896 * 177.59833 * 10 9 8 12 12 C 1.50705 * 109.48304 * 297.63118 * 10 9 8 13 13 H 1.07998 * 119.99523 * 5.17690 * 12 10 9 14 14 C 1.37875 * 120.00105 * 185.18015 * 12 10 9 15 15 N 1.31522 * 119.99899 * 355.78874 * 14 12 10 16 16 Si 1.86797 * 120.00089 * 175.78616 * 14 12 10 17 17 H 1.48497 * 109.46826 * 90.00071 * 16 14 12 18 18 H 1.48504 * 109.47251 * 330.00175 * 16 14 12 19 19 H 1.48501 * 109.47140 * 209.99940 * 16 14 12 20 20 O 1.42898 * 109.41547 * 57.61297 * 10 9 8 21 21 H 1.09003 * 109.47177 * 300.00009 * 1 2 3 22 22 H 1.08996 * 109.46869 * 59.99934 * 1 2 3 23 23 H 1.08998 * 109.47309 * 180.02562 * 1 2 3 24 24 H 1.08990 * 109.47507 * 240.00058 * 2 1 3 25 25 H 1.09008 * 109.46845 * 64.92097 * 3 2 1 26 26 H 1.08999 * 109.47048 * 184.91781 * 3 2 1 27 27 H 1.08997 * 109.47274 * 304.91817 * 3 2 1 28 28 H 1.09001 * 109.47310 * 305.99392 * 4 2 1 29 29 H 1.09005 * 109.47429 * 185.99499 * 4 2 1 30 30 H 1.08995 * 109.52094 * 302.30770 * 7 5 4 31 31 H 1.08999 * 109.52345 * 62.49896 * 7 5 4 32 32 H 1.09001 * 109.53688 * 176.84832 * 8 7 5 33 33 H 1.08995 * 109.54276 * 297.02106 * 8 7 5 34 34 H 1.09003 * 109.51504 * 183.11327 * 9 8 7 35 35 H 1.08997 * 109.52638 * 62.92638 * 9 8 7 36 36 H 0.96999 * 120.00023 * 5.34056 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6566 -2.2007 1.1763 6 1 0.5803 -2.2905 1.0292 7 6 2.0535 -2.8961 2.4812 8 6 1.7214 -4.3879 2.3769 9 6 2.4439 -4.9767 1.1613 10 6 2.0320 -4.2009 -0.0925 11 1 2.5754 -4.5879 -0.9545 12 6 0.5507 -4.3613 -0.3188 13 1 -0.0527 -4.8861 0.4070 14 6 -0.0342 -3.8381 -1.4525 15 7 0.6840 -3.1282 -2.2951 16 14 -1.8465 -4.1375 -1.7917 17 1 -2.6512 -3.0517 -1.1764 18 1 -2.2499 -5.4430 -1.2100 19 1 -2.0792 -4.1559 -3.2582 20 8 2.3401 -2.8166 0.0828 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.7504 1.9303 0.9309 26 1 3.1265 1.4438 -0.0881 27 1 1.6066 1.9812 -0.8426 28 1 1.5916 -0.2731 2.1360 29 1 3.1247 -0.6293 1.3047 30 1 3.1232 -2.7719 2.6494 31 1 1.4999 -2.4568 3.3110 32 1 2.0526 -4.8991 3.2809 33 1 0.6452 -4.5146 2.2599 34 1 2.1694 -6.0255 1.0473 35 1 3.5215 -4.8946 1.3029 36 1 1.6403 -3.0373 -2.1605 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306354685.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:29 Heat of formation + Delta-G solvation = -103.552805 kcal Electronic energy + Delta-G solvation = -15525.210658 eV Core-core repulsion = 13200.114594 eV Total energy + Delta-G solvation = -2325.096063 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.30503 -37.08457 -34.72989 -34.07384 -32.05901 -28.30001 -27.96008 -26.57258 -24.31284 -23.07380 -21.00419 -20.64450 -18.57664 -16.84460 -16.64789 -15.88469 -15.74300 -15.46673 -15.21707 -14.71550 -14.32732 -13.78253 -13.41273 -13.18956 -12.98582 -12.85169 -12.64624 -12.61125 -12.50894 -11.98484 -11.95148 -11.77754 -11.69059 -11.41155 -11.31458 -10.95090 -10.51885 -10.36607 -9.60683 -8.48296 -6.28238 1.50618 1.58248 1.74940 2.57446 3.18203 3.52948 3.85807 4.09485 4.14770 4.21646 4.24798 4.30858 4.52489 4.63649 4.72960 4.81291 4.84533 4.88778 4.91341 4.94138 4.98284 5.06136 5.17355 5.19194 5.22365 5.37133 5.43003 5.48055 5.57479 5.67627 5.70000 6.04440 6.26333 6.68035 7.03826 7.59832 8.87859 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.021794 B = 0.015779 C = 0.010795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.424275 B = 1774.034493 C = 2593.120300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.091 4.091 3 C -0.135 4.135 4 C -0.097 4.097 5 C 0.098 3.902 6 H 0.037 0.963 7 C -0.139 4.139 8 C -0.106 4.106 9 C -0.130 4.130 10 C 0.189 3.811 11 H 0.017 0.983 12 C -0.630 4.630 13 H 0.044 0.956 14 C -0.009 4.009 15 N -0.912 5.912 16 Si 1.099 2.901 17 H -0.276 1.276 18 H -0.273 1.273 19 H -0.285 1.285 20 O -0.408 6.408 21 H 0.069 0.931 22 H 0.044 0.956 23 H 0.029 0.971 24 H 0.036 0.964 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.716 4.803 8.687 9.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.109 4.109 3 C -0.192 4.192 4 C -0.134 4.134 5 C 0.040 3.960 6 H 0.055 0.945 7 C -0.176 4.176 8 C -0.143 4.143 9 C -0.168 4.168 10 C 0.134 3.866 11 H 0.035 0.965 12 C -0.667 4.667 13 H 0.062 0.938 14 C -0.212 4.212 15 N -0.548 5.548 16 Si 0.923 3.077 17 H -0.202 1.202 18 H -0.198 1.198 19 H -0.211 1.211 20 O -0.329 6.329 21 H 0.088 0.912 22 H 0.063 0.937 23 H 0.048 0.952 24 H 0.055 0.945 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.107 0.893 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.357 5.264 7.544 9.206 hybrid contribution 1.172 -0.934 0.667 1.640 sum 0.816 4.331 8.211 9.319 Atomic orbital electron populations 1.21734 0.95832 1.00501 1.01196 1.20918 0.95597 0.96531 0.97900 1.21765 1.00680 0.94526 1.02228 1.21633 1.00882 0.92733 0.98133 1.21823 0.95985 0.92201 0.85988 0.94469 1.22122 1.01417 0.95961 0.98122 1.21417 1.00006 0.95917 0.96977 1.21950 0.98667 0.99319 0.96868 1.19727 0.94521 0.79925 0.92477 0.96508 1.22510 0.94677 1.41046 1.08488 0.93789 1.26869 1.09203 0.92232 0.92883 1.70733 1.08703 1.35772 1.39559 0.83178 0.71292 0.76971 0.76258 1.20215 1.19844 1.21114 1.87763 1.68155 1.25797 1.51170 0.91216 0.93663 0.95200 0.94541 0.91082 0.92746 0.92850 0.89267 0.91997 0.91794 0.90039 0.90870 0.93172 0.92620 0.93042 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 8.97 71.98 0.65 -4.42 16 2 C -0.09 -3.37 2.87 -10.79 -0.03 -3.40 16 3 C -0.13 -3.81 9.19 71.98 0.66 -3.15 16 4 C -0.10 -3.38 4.38 30.60 0.13 -3.25 16 5 C 0.10 4.15 2.25 30.63 0.07 4.22 16 6 H 0.04 1.82 5.32 -2.39 -0.01 1.80 16 7 C -0.14 -4.90 5.42 30.69 0.17 -4.74 16 8 C -0.11 -3.95 5.77 30.72 0.18 -3.77 16 9 C -0.13 -5.54 5.60 30.68 0.17 -5.37 16 10 C 0.19 9.85 2.72 29.88 0.08 9.93 16 11 H 0.02 0.98 7.88 -2.39 -0.02 0.96 16 12 C -0.63 -34.84 6.65 25.60 0.17 -34.67 16 13 H 0.04 2.42 6.69 -2.91 -0.02 2.40 16 14 C -0.01 -0.51 5.43 84.65 0.46 -0.05 16 15 N -0.91 -55.39 13.54 21.45 0.29 -55.10 16 16 Si 1.10 50.56 29.91 68.60 2.05 52.62 16 17 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 19 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 20 O -0.41 -20.75 8.67 -148.98 -1.29 -22.04 16 21 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 22 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 23 H 0.03 1.33 6.49 -2.39 -0.02 1.31 16 24 H 0.04 1.70 7.68 -2.39 -0.02 1.68 16 25 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 26 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.05 1.45 8.14 -2.39 -0.02 1.44 16 28 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 30 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.05 2.05 6.76 -2.39 -0.02 2.03 16 34 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.26 16.69 6.59 -92.71 -0.61 16.07 16 Total: -1.00 -62.73 277.81 4.93 -57.80 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 1.18 Total: 15.39 kcal Atomic # 6 Polarization: -51.37 SS G_CDS: 2.71 Total: -48.66 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: 0.29 Total: -55.10 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -1.29 Total: -22.04 kcal Atomic # 14 Polarization: 50.56 SS G_CDS: 2.05 Total: 52.62 kcal Total: -62.73 4.93 -57.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306354685.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.752 kcal (2) G-P(sol) polarization free energy of solvation -62.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds