Wall clock time and date at job start Mon Mar 30 2020 03:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47114 * 2 1 4 4 C 1.52994 * 109.47008 * 120.00504 * 2 1 3 5 5 C 1.53005 * 109.47302 * 175.00263 * 4 2 1 6 6 H 1.08998 * 109.48254 * 55.01673 * 5 4 2 7 7 C 1.53090 * 109.49235 * 175.05192 * 5 4 2 8 8 C 1.53181 * 109.16481 * 177.59797 * 7 5 4 9 9 C 1.53186 * 109.02951 * 303.01710 * 8 7 5 10 10 C 1.53087 * 109.16665 * 56.98173 * 9 8 7 11 11 H 1.09001 * 109.48123 * 62.37055 * 10 9 8 12 12 C 1.50701 * 109.48163 * 182.40725 * 10 9 8 13 13 H 1.07993 * 119.99757 * 359.93852 * 12 10 9 14 14 C 1.37873 * 119.99739 * 179.97438 * 12 10 9 15 15 N 1.31508 * 120.00635 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 119.99853 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46931 * 90.00034 * 16 14 12 18 18 H 1.48497 * 109.47558 * 210.00221 * 16 14 12 19 19 H 1.48506 * 109.47253 * 330.00571 * 16 14 12 20 20 O 1.42905 * 109.41504 * 302.39123 * 10 9 8 21 21 H 1.08993 * 109.47134 * 299.99665 * 1 2 3 22 22 H 1.09003 * 109.47066 * 59.99568 * 1 2 3 23 23 H 1.09003 * 109.47443 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47103 * 240.00264 * 2 1 3 25 25 H 1.09003 * 109.46920 * 60.00152 * 3 2 1 26 26 H 1.09005 * 109.47156 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.47507 * 300.00162 * 3 2 1 28 28 H 1.08994 * 109.47817 * 54.99765 * 4 2 1 29 29 H 1.09005 * 109.47206 * 294.99674 * 4 2 1 30 30 H 1.09007 * 109.51738 * 297.49873 * 7 5 4 31 31 H 1.08996 * 109.52412 * 57.68848 * 7 5 4 32 32 H 1.08997 * 109.54268 * 62.87505 * 8 7 5 33 33 H 1.08993 * 109.54386 * 183.06408 * 8 7 5 34 34 H 1.09001 * 109.51857 * 176.88572 * 9 8 7 35 35 H 1.08995 * 109.52201 * 297.01063 * 9 8 7 36 36 H 0.97003 * 120.00510 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2491 5 6 3.5648 -0.8311 1.1880 6 1 3.9956 0.1610 1.0531 7 6 4.0858 -1.4411 2.4918 8 6 5.6062 -1.6031 2.3990 9 6 5.9430 -2.4653 1.1785 10 6 5.3503 -1.8158 -0.0747 11 1 5.8044 -0.8365 -0.2260 12 6 5.6268 -2.6886 -1.2717 13 1 6.1714 -3.6133 -1.1515 14 6 5.1849 -2.3061 -2.5205 15 7 4.5227 -1.1794 -2.6672 16 14 5.5281 -3.3876 -4.0044 17 1 4.4151 -4.3548 -4.1800 18 1 5.6439 -2.5403 -5.2184 19 1 6.7984 -4.1277 -3.7944 20 8 3.9388 -1.6661 0.0902 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.6766 1.9562 0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6054 -1.7198 1.2951 29 1 1.7516 -0.1584 2.1370 30 1 3.8398 -0.7832 3.3255 31 1 3.6244 -2.4162 2.6477 32 1 6.0714 -0.6231 2.2927 33 1 5.9771 -2.0869 3.3025 34 1 7.0253 -2.5400 1.0728 35 1 5.5201 -3.4614 1.3083 36 1 4.2115 -0.9105 -3.5457 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306354686.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:33 Heat of formation + Delta-G solvation = -83.427994 kcal Electronic energy + Delta-G solvation = -15146.236012 eV Core-core repulsion = 12822.012626 eV Total energy + Delta-G solvation = -2324.223386 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.35895 -35.50998 -32.81546 -32.20076 -30.43077 -26.94222 -26.63537 -24.97343 -22.37573 -21.06825 -19.18147 -19.15884 -16.53425 -15.13519 -14.77140 -14.30639 -14.21228 -13.92472 -13.46743 -12.84024 -12.58681 -12.30038 -11.91313 -11.80381 -11.48946 -11.28906 -10.92465 -10.84598 -10.62020 -10.48988 -10.30938 -10.17438 -10.10417 -9.91124 -9.63967 -9.27028 -8.76877 -8.42553 -7.74914 -5.96022 -4.07628 3.33742 3.40082 3.42706 4.45608 5.03945 5.28765 5.46913 5.52823 5.62936 5.70955 5.75325 5.82529 6.03839 6.06459 6.12343 6.25759 6.28388 6.34039 6.35993 6.40476 6.44236 6.52810 6.65406 6.76711 6.85860 6.90738 6.96796 7.00498 7.06098 7.24688 7.58642 7.94760 8.35621 8.85346 9.23554 9.62238 11.11274 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.023937 B = 0.012144 C = 0.008783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.475829 B = 2305.100325 C = 3187.120098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 C -0.139 4.139 4 C -0.098 4.098 5 C 0.082 3.918 6 H 0.042 0.958 7 C -0.146 4.146 8 C -0.120 4.120 9 C -0.144 4.144 10 C 0.220 3.780 11 H 0.011 0.989 12 C -0.527 4.527 13 H 0.062 0.938 14 C 0.079 3.921 15 N -0.858 5.858 16 Si 0.889 3.111 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.274 1.274 20 O -0.350 6.350 21 H 0.044 0.956 22 H 0.048 0.952 23 H 0.049 0.951 24 H 0.095 0.905 25 H 0.039 0.961 26 H 0.060 0.940 27 H 0.046 0.954 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.912 2.682 6.999 8.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 C -0.197 4.197 4 C -0.135 4.135 5 C 0.023 3.977 6 H 0.060 0.940 7 C -0.184 4.184 8 C -0.158 4.158 9 C -0.182 4.182 10 C 0.165 3.835 11 H 0.029 0.971 12 C -0.564 4.564 13 H 0.080 0.920 14 C -0.127 4.127 15 N -0.494 5.494 16 Si 0.716 3.284 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.199 1.199 20 O -0.269 6.269 21 H 0.063 0.937 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.113 0.887 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.130 2.719 6.750 8.367 hybrid contribution 0.325 -0.432 -0.560 0.778 sum -3.805 2.287 6.190 7.617 Atomic orbital electron populations 1.21836 0.96654 1.00973 1.00555 1.21049 0.93890 0.96198 1.00345 1.21792 1.01801 0.96130 0.99938 1.21543 0.94925 1.00096 0.96969 1.21869 0.93807 0.94254 0.87731 0.94046 1.22206 0.96459 1.01076 0.98690 1.21606 0.95733 1.00002 0.98432 1.22257 1.00299 0.99233 0.96386 1.19642 0.78679 0.94748 0.90469 0.97132 1.20998 1.36625 1.07950 0.90813 0.92013 1.25034 0.94069 0.94760 0.98792 1.70032 1.35292 1.21050 1.22997 0.86669 0.78718 0.80657 0.82338 1.20546 1.21206 1.19857 1.88329 1.25957 1.66869 1.45735 0.93716 0.93325 0.93175 0.88671 0.94172 0.92111 0.93510 0.92113 0.92656 0.92968 0.92079 0.92867 0.93408 0.92707 0.92641 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.19 37.16 0.34 -1.80 16 2 C -0.10 -1.75 2.87 -90.63 -0.26 -2.01 16 3 C -0.14 -2.36 8.95 37.15 0.33 -2.02 16 4 C -0.10 -1.75 4.39 -26.73 -0.12 -1.87 16 5 C 0.08 1.70 2.51 -26.68 -0.07 1.63 16 6 H 0.04 0.88 6.35 -51.93 -0.33 0.55 16 7 C -0.15 -2.64 5.42 -26.59 -0.14 -2.79 16 8 C -0.12 -2.21 6.03 -26.54 -0.16 -2.37 16 9 C -0.14 -3.13 5.36 -26.59 -0.14 -3.28 16 10 C 0.22 5.75 2.50 -27.84 -0.07 5.68 16 11 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 12 C -0.53 -14.94 8.79 -34.44 -0.30 -15.25 16 13 H 0.06 1.71 7.74 -52.49 -0.41 1.31 16 14 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 15 N -0.86 -25.02 12.84 55.43 0.71 -24.31 16 16 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 20 O -0.35 -8.98 8.89 -35.23 -0.31 -9.29 16 21 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.09 2.14 7.70 -51.93 -0.40 1.74 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 1.14 6.46 -51.93 -0.34 0.81 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.81 8.14 -51.92 -0.42 0.38 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 284.55 15.07 4.29 4.29 Total: -1.00 -29.13 284.55 -7.54 -36.67 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -6.52 Total: -1.92 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: -0.69 Total: -21.91 kcal Atomic # 7 Polarization: -25.02 SS G_CDS: 0.71 Total: -24.31 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -0.31 Total: -9.29 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.13 -7.54 -36.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306354686.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.755 kcal (2) G-P(sol) polarization free energy of solvation -29.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds