Wall clock time and date at job start Mon Mar 30 2020 03:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47114 * 2 1 4 4 C 1.52994 * 109.47008 * 120.00504 * 2 1 3 5 5 C 1.53005 * 109.47302 * 175.00263 * 4 2 1 6 6 H 1.08998 * 109.48254 * 55.01673 * 5 4 2 7 7 C 1.53090 * 109.49235 * 175.05192 * 5 4 2 8 8 C 1.53181 * 109.16481 * 177.59797 * 7 5 4 9 9 C 1.53186 * 109.02951 * 303.01710 * 8 7 5 10 10 C 1.53087 * 109.16665 * 56.98173 * 9 8 7 11 11 H 1.09001 * 109.48123 * 62.37055 * 10 9 8 12 12 C 1.50701 * 109.48163 * 182.40725 * 10 9 8 13 13 H 1.07993 * 119.99757 * 359.93852 * 12 10 9 14 14 C 1.37873 * 119.99739 * 179.97438 * 12 10 9 15 15 N 1.31508 * 120.00635 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 119.99853 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46931 * 90.00034 * 16 14 12 18 18 H 1.48497 * 109.47558 * 210.00221 * 16 14 12 19 19 H 1.48506 * 109.47253 * 330.00571 * 16 14 12 20 20 O 1.42905 * 109.41504 * 302.39123 * 10 9 8 21 21 H 1.08993 * 109.47134 * 299.99665 * 1 2 3 22 22 H 1.09003 * 109.47066 * 59.99568 * 1 2 3 23 23 H 1.09003 * 109.47443 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47103 * 240.00264 * 2 1 3 25 25 H 1.09003 * 109.46920 * 60.00152 * 3 2 1 26 26 H 1.09005 * 109.47156 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.47507 * 300.00162 * 3 2 1 28 28 H 1.08994 * 109.47817 * 54.99765 * 4 2 1 29 29 H 1.09005 * 109.47206 * 294.99674 * 4 2 1 30 30 H 1.09007 * 109.51738 * 297.49873 * 7 5 4 31 31 H 1.08996 * 109.52412 * 57.68848 * 7 5 4 32 32 H 1.08997 * 109.54268 * 62.87505 * 8 7 5 33 33 H 1.08993 * 109.54386 * 183.06408 * 8 7 5 34 34 H 1.09001 * 109.51857 * 176.88572 * 9 8 7 35 35 H 1.08995 * 109.52201 * 297.01063 * 9 8 7 36 36 H 0.97003 * 120.00510 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2491 5 6 3.5648 -0.8311 1.1880 6 1 3.9956 0.1610 1.0531 7 6 4.0858 -1.4411 2.4918 8 6 5.6062 -1.6031 2.3990 9 6 5.9430 -2.4653 1.1785 10 6 5.3503 -1.8158 -0.0747 11 1 5.8044 -0.8365 -0.2260 12 6 5.6268 -2.6886 -1.2717 13 1 6.1714 -3.6133 -1.1515 14 6 5.1849 -2.3061 -2.5205 15 7 4.5227 -1.1794 -2.6672 16 14 5.5281 -3.3876 -4.0044 17 1 4.4151 -4.3548 -4.1800 18 1 5.6439 -2.5403 -5.2184 19 1 6.7984 -4.1277 -3.7944 20 8 3.9388 -1.6661 0.0902 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.6766 1.9562 0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6054 -1.7198 1.2951 29 1 1.7516 -0.1584 2.1370 30 1 3.8398 -0.7832 3.3255 31 1 3.6244 -2.4162 2.6477 32 1 6.0714 -0.6231 2.2927 33 1 5.9771 -2.0869 3.3025 34 1 7.0253 -2.5400 1.0728 35 1 5.5201 -3.4614 1.3083 36 1 4.2115 -0.9105 -3.5457 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306354686.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:32 Heat of formation + Delta-G solvation = -99.863842 kcal Electronic energy + Delta-G solvation = -15146.948724 eV Core-core repulsion = 12822.012626 eV Total energy + Delta-G solvation = -2324.936098 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.06947 -37.02410 -34.79438 -33.98424 -32.18741 -28.67781 -27.96806 -26.75876 -24.12306 -22.79855 -20.86211 -20.60249 -18.64772 -16.85567 -16.71030 -16.05714 -15.80268 -15.43348 -14.94865 -14.69953 -14.21304 -13.88291 -13.55327 -13.05510 -12.97895 -12.88338 -12.74797 -12.55691 -12.41615 -12.14229 -11.93539 -11.82017 -11.73311 -11.38601 -11.32082 -10.95823 -10.77970 -10.45582 -9.60269 -8.11382 -6.31585 1.39910 1.41511 1.51498 2.41396 3.06298 3.67674 3.86475 4.12365 4.17532 4.23008 4.25968 4.32471 4.52652 4.56738 4.71426 4.83131 4.87863 4.92400 4.93427 4.95188 5.03807 5.11071 5.14118 5.17914 5.27093 5.31339 5.36489 5.48857 5.55091 5.64216 5.73230 5.80794 6.25702 6.70669 7.30303 7.45048 8.95488 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.023937 B = 0.012144 C = 0.008783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.475829 B = 2305.100325 C = 3187.120098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.098 4.098 3 C -0.133 4.133 4 C -0.092 4.092 5 C 0.071 3.929 6 H 0.028 0.972 7 C -0.140 4.140 8 C -0.116 4.116 9 C -0.138 4.138 10 C 0.219 3.781 11 H -0.027 1.027 12 C -0.555 4.555 13 H 0.061 0.939 14 C 0.028 3.972 15 N -0.889 5.889 16 Si 0.957 3.043 17 H -0.277 1.277 18 H -0.280 1.280 19 H -0.264 1.264 20 O -0.380 6.380 21 H 0.072 0.928 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.038 0.962 25 H 0.072 0.928 26 H 0.030 0.970 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.689 2.584 8.531 10.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.116 4.116 3 C -0.191 4.191 4 C -0.129 4.129 5 C 0.013 3.987 6 H 0.046 0.954 7 C -0.178 4.178 8 C -0.154 4.154 9 C -0.176 4.176 10 C 0.163 3.837 11 H -0.009 1.009 12 C -0.592 4.592 13 H 0.079 0.921 14 C -0.175 4.175 15 N -0.525 5.525 16 Si 0.782 3.218 17 H -0.202 1.202 18 H -0.205 1.205 19 H -0.188 1.188 20 O -0.299 6.299 21 H 0.091 0.909 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.091 0.909 26 H 0.049 0.951 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.902 2.618 8.294 9.984 hybrid contribution 0.562 -0.352 -1.015 1.212 sum -4.340 2.267 7.279 8.773 Atomic orbital electron populations 1.21756 0.93802 1.01512 1.02147 1.20979 0.96281 0.96206 0.98168 1.21728 0.99855 0.95826 1.01645 1.21558 0.92752 1.00408 0.98230 1.22182 0.95784 0.93036 0.87740 0.95430 1.22163 0.95908 1.01695 0.98042 1.21597 0.96302 0.99576 0.97894 1.22118 1.00110 0.99225 0.96150 1.19468 0.79311 0.92845 0.92118 1.00908 1.21420 1.37109 1.08254 0.92451 0.92119 1.25875 0.93792 0.96086 1.01786 1.70174 1.36151 1.22629 1.23586 0.85598 0.78824 0.78816 0.78597 1.20236 1.20521 1.18801 1.88227 1.25251 1.67996 1.48458 0.90935 0.92888 0.93213 0.94316 0.90931 0.95059 0.93266 0.92584 0.88925 0.89312 0.91944 0.92808 0.90009 0.92355 0.93080 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 9.19 71.98 0.66 -3.12 16 2 C -0.10 -3.52 2.87 -10.80 -0.03 -3.56 16 3 C -0.13 -4.45 8.95 71.98 0.64 -3.80 16 4 C -0.09 -3.17 4.39 30.59 0.13 -3.04 16 5 C 0.07 2.91 2.51 30.63 0.08 2.99 16 6 H 0.03 1.20 6.35 -2.39 -0.02 1.19 16 7 C -0.14 -4.73 5.42 30.68 0.17 -4.56 16 8 C -0.12 -4.04 6.03 30.72 0.19 -3.86 16 9 C -0.14 -6.02 5.36 30.69 0.16 -5.85 16 10 C 0.22 11.84 2.50 29.88 0.07 11.91 16 11 H -0.03 -1.59 8.14 -2.39 -0.02 -1.61 16 12 C -0.56 -32.52 8.79 25.60 0.23 -32.29 16 13 H 0.06 3.45 7.74 -2.91 -0.02 3.42 16 14 C 0.03 1.60 5.40 84.65 0.46 2.06 16 15 N -0.89 -53.99 12.84 21.44 0.28 -53.72 16 16 Si 0.96 45.01 29.54 68.60 2.03 47.04 16 17 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 20 O -0.38 -20.16 8.89 -148.98 -1.32 -21.48 16 21 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.04 1.82 7.70 -2.39 -0.02 1.81 16 25 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.03 1.20 6.46 -2.38 -0.02 1.18 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 30 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 31 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.08 2.32 8.14 -2.39 -0.02 2.31 16 34 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -65.70 284.55 4.74 -60.96 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 1.01 Total: 10.33 kcal Atomic # 6 Polarization: -45.89 SS G_CDS: 2.76 Total: -43.13 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: 0.28 Total: -53.72 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -1.32 Total: -21.48 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -65.70 4.74 -60.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306354686.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.906 kcal (2) G-P(sol) polarization free energy of solvation -65.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds