Wall clock time and date at job start Mon Mar 30 2020 03:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46755 * 2 1 4 4 C 1.53000 * 109.98805 * 178.22514 * 3 2 1 5 5 C 1.53001 * 109.47291 * 306.08099 * 4 3 2 6 6 C 1.52994 * 109.47268 * 66.08279 * 4 3 2 7 7 C 1.54097 * 109.87742 * 299.30835 * 3 2 1 8 8 C 1.54808 * 104.18967 * 117.39835 * 7 3 2 9 9 C 1.54998 * 102.08784 * 339.11703 * 8 7 3 10 10 H 1.08998 * 110.62117 * 278.52384 * 9 8 7 11 11 C 1.50707 * 110.61512 * 155.68420 * 9 8 7 12 12 H 1.07994 * 119.99829 * 2.17720 * 11 9 8 13 13 C 1.37875 * 119.99616 * 182.17841 * 11 9 8 14 14 N 1.31521 * 120.00336 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99961 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47332 * 89.99808 * 15 13 11 17 17 H 1.48501 * 109.47234 * 209.99871 * 15 13 11 18 18 H 1.48508 * 109.46937 * 329.99974 * 15 13 11 19 19 O 1.43741 * 109.87917 * 57.14452 * 3 2 1 20 20 H 1.08999 * 109.46589 * 172.60715 * 1 2 3 21 21 H 1.09006 * 109.47012 * 292.60242 * 1 2 3 22 22 H 1.08997 * 109.47247 * 52.60518 * 1 2 3 23 23 H 1.08995 * 109.47085 * 240.00101 * 2 1 3 24 24 H 1.09001 * 109.47234 * 119.99747 * 2 1 3 25 25 H 1.09004 * 109.47009 * 186.08425 * 4 3 2 26 26 H 1.09004 * 109.46827 * 60.00216 * 5 4 3 27 27 H 1.09000 * 109.47519 * 179.97438 * 5 4 3 28 28 H 1.08999 * 109.47649 * 300.00757 * 5 4 3 29 29 H 1.08996 * 109.47320 * 299.99748 * 6 4 3 30 30 H 1.08996 * 109.47441 * 60.00274 * 6 4 3 31 31 H 1.09008 * 109.46950 * 179.97438 * 6 4 3 32 32 H 1.08995 * 110.49123 * 358.71545 * 7 3 2 33 33 H 1.09007 * 110.59734 * 236.12987 * 7 3 2 34 34 H 1.08996 * 110.90960 * 220.92356 * 8 7 3 35 35 H 1.08999 * 110.93760 * 97.32281 * 8 7 3 36 36 H 0.97001 * 120.00105 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5692 1.4567 0.0445 5 6 4.0526 0.6240 1.2336 6 6 4.1227 0.8631 -1.2524 7 6 1.5457 2.1730 -1.2637 8 6 0.6534 3.3142 -0.7178 9 6 0.2983 2.7986 0.7001 10 1 -0.5247 2.0855 0.6544 11 6 -0.0477 3.9480 1.6114 12 1 -0.0578 4.9574 1.2275 13 6 -0.3514 3.7108 2.9352 14 7 -0.3395 2.4815 3.4026 15 14 -0.7810 5.1353 4.0647 16 1 -2.2467 5.3712 4.0285 17 1 -0.3663 4.8090 5.4528 18 1 -0.0715 6.3584 3.6106 19 8 1.5114 2.1478 1.1355 20 1 -0.3632 -1.0191 -0.1322 21 1 -0.3633 0.3950 0.9488 22 1 -0.3633 0.6241 -0.8164 23 1 1.8933 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 3.9201 2.4830 0.1532 26 1 3.7017 -0.4023 1.1250 27 1 5.1421 0.6337 1.2651 28 1 3.6582 1.0468 2.1576 29 1 3.7720 -0.1631 -1.3610 30 1 3.7785 1.4563 -2.0995 31 1 5.2123 0.8736 -1.2208 32 1 0.9621 1.4988 -1.8904 33 1 2.3868 2.5812 -1.8243 34 1 -0.2441 3.4307 -1.3253 35 1 1.2085 4.2507 -0.6635 36 1 -0.5535 2.3147 4.3339 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306358336.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:13 Heat of formation + Delta-G solvation = -64.718779 kcal Electronic energy + Delta-G solvation = -15525.990590 eV Core-core repulsion = 13202.578496 eV Total energy + Delta-G solvation = -2323.412094 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.28070 -34.76647 -32.34990 -31.46884 -30.72925 -27.71495 -26.61858 -24.67819 -22.30822 -21.39895 -20.11588 -17.99112 -16.51724 -15.16307 -14.91719 -14.58681 -14.25032 -13.70371 -13.35588 -12.59559 -12.41964 -12.03936 -11.73101 -11.64023 -11.57353 -11.20659 -10.98215 -10.86824 -10.63514 -10.52353 -10.49134 -10.24410 -10.03370 -9.95620 -9.46323 -9.32395 -8.93483 -8.53494 -7.75874 -5.97065 -4.07998 3.32713 3.39632 3.43144 4.45756 4.98634 5.30600 5.36138 5.44946 5.65826 5.72940 5.77295 5.91932 5.99827 6.02988 6.08821 6.16288 6.24365 6.27793 6.34246 6.46513 6.51692 6.60528 6.73905 6.76375 6.78506 6.88758 6.96466 7.03289 7.10218 7.17645 7.65810 7.94736 8.33835 8.71194 9.06162 9.61618 11.10626 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.037459 B = 0.010191 C = 0.009926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.300273 B = 2746.856924 C = 2820.213816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.127 4.127 3 C 0.102 3.898 4 C -0.085 4.085 5 C -0.141 4.141 6 C -0.147 4.147 7 C -0.148 4.148 8 C -0.150 4.150 9 C 0.201 3.799 10 H 0.041 0.959 11 C -0.529 4.529 12 H 0.061 0.939 13 C 0.078 3.922 14 N -0.863 5.863 15 Si 0.889 3.111 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 O -0.342 6.342 20 H 0.035 0.965 21 H 0.082 0.918 22 H 0.049 0.951 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.051 0.949 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.991 -3.943 -7.309 9.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.165 4.165 3 C 0.061 3.939 4 C -0.104 4.104 5 C -0.199 4.199 6 C -0.204 4.204 7 C -0.186 4.186 8 C -0.188 4.188 9 C 0.146 3.854 10 H 0.058 0.942 11 C -0.567 4.567 12 H 0.079 0.921 13 C -0.128 4.128 14 N -0.500 5.500 15 Si 0.717 3.283 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.198 1.198 19 O -0.261 6.261 20 H 0.054 0.946 21 H 0.101 0.899 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.053 -4.054 -6.937 9.492 hybrid contribution -0.276 0.708 0.416 0.866 sum 4.778 -3.346 -6.521 8.749 Atomic orbital electron populations 1.22009 0.95946 0.99666 1.03719 1.21987 0.96462 0.97393 1.00666 1.21856 0.92088 0.91717 0.88206 1.21130 0.94810 0.99831 0.94588 1.21802 0.99044 0.99746 0.99269 1.21945 0.99888 1.00919 0.97641 1.23065 0.99364 0.98243 0.97928 1.23208 0.98019 0.97611 0.99924 1.20904 0.84751 0.91660 0.88049 0.94200 1.21042 1.47553 0.92876 0.95210 0.92110 1.25045 0.94165 0.95425 0.98142 1.70024 1.46196 1.18970 1.14791 0.86661 0.78532 0.82942 0.80195 1.20625 1.21156 1.19837 1.89236 1.41073 1.66088 1.29752 0.94553 0.89933 0.93180 0.93128 0.91730 0.91232 0.92987 0.94083 0.91508 0.92768 0.92663 0.93291 0.92064 0.92102 0.92707 0.92121 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 8.18 37.16 0.30 -2.69 16 2 C -0.13 -2.34 4.39 -26.73 -0.12 -2.46 16 3 C 0.10 2.04 0.57 -90.04 -0.05 1.99 16 4 C -0.08 -1.48 2.42 -90.62 -0.22 -1.70 16 5 C -0.14 -2.39 8.60 37.16 0.32 -2.08 16 6 C -0.15 -2.04 8.64 37.15 0.32 -1.72 16 7 C -0.15 -2.74 5.03 -25.21 -0.13 -2.87 16 8 C -0.15 -3.21 6.53 -24.72 -0.16 -3.37 16 9 C 0.20 5.18 2.34 -26.82 -0.06 5.11 16 10 H 0.04 1.08 5.06 -51.93 -0.26 0.82 16 11 C -0.53 -15.01 8.83 -34.44 -0.30 -15.31 16 12 H 0.06 1.69 7.78 -52.49 -0.41 1.28 16 13 C 0.08 2.21 5.43 -17.82 -0.10 2.11 16 14 N -0.86 -25.48 13.04 55.43 0.72 -24.76 16 15 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 O -0.34 -8.75 9.68 -35.23 -0.34 -9.09 16 20 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 21 H 0.08 1.90 6.35 -51.93 -0.33 1.57 16 22 H 0.05 0.93 5.95 -51.93 -0.31 0.62 16 23 H 0.05 0.80 6.74 -51.93 -0.35 0.45 16 24 H 0.06 1.22 6.28 -51.93 -0.33 0.90 16 25 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.05 0.83 6.34 -51.93 -0.33 0.50 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.32 7.91 -51.93 -0.41 0.91 16 29 H 0.05 0.72 6.68 -51.93 -0.35 0.37 16 30 H 0.05 0.74 6.24 -51.93 -0.32 0.41 16 31 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.06 1.04 6.51 -51.93 -0.34 0.70 16 33 H 0.06 1.01 6.14 -51.92 -0.32 0.70 16 34 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 1.32 8.05 -51.93 -0.42 0.90 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 269.58 15.07 4.06 4.06 Total: -1.00 -29.51 269.58 -6.49 -36.00 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.72 Total: 0.18 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: -0.20 Total: -22.97 kcal Atomic # 7 Polarization: -25.48 SS G_CDS: 0.72 Total: -24.76 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -0.34 Total: -9.09 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.51 -6.49 -36.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306358336.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.716 kcal (2) G-P(sol) polarization free energy of solvation -29.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds