Wall clock time and date at job start Mon Mar 30 2020 03:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46755 * 2 1 4 4 C 1.53000 * 109.98805 * 178.22514 * 3 2 1 5 5 C 1.53001 * 109.47291 * 306.08099 * 4 3 2 6 6 C 1.52994 * 109.47268 * 66.08279 * 4 3 2 7 7 C 1.54097 * 109.87742 * 299.30835 * 3 2 1 8 8 C 1.54808 * 104.18967 * 117.39835 * 7 3 2 9 9 C 1.54998 * 102.08784 * 339.11703 * 8 7 3 10 10 H 1.08998 * 110.62117 * 278.52384 * 9 8 7 11 11 C 1.50707 * 110.61512 * 155.68420 * 9 8 7 12 12 H 1.07994 * 119.99829 * 2.17720 * 11 9 8 13 13 C 1.37875 * 119.99616 * 182.17841 * 11 9 8 14 14 N 1.31521 * 120.00336 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99961 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47332 * 89.99808 * 15 13 11 17 17 H 1.48501 * 109.47234 * 209.99871 * 15 13 11 18 18 H 1.48508 * 109.46937 * 329.99974 * 15 13 11 19 19 O 1.43741 * 109.87917 * 57.14452 * 3 2 1 20 20 H 1.08999 * 109.46589 * 172.60715 * 1 2 3 21 21 H 1.09006 * 109.47012 * 292.60242 * 1 2 3 22 22 H 1.08997 * 109.47247 * 52.60518 * 1 2 3 23 23 H 1.08995 * 109.47085 * 240.00101 * 2 1 3 24 24 H 1.09001 * 109.47234 * 119.99747 * 2 1 3 25 25 H 1.09004 * 109.47009 * 186.08425 * 4 3 2 26 26 H 1.09004 * 109.46827 * 60.00216 * 5 4 3 27 27 H 1.09000 * 109.47519 * 179.97438 * 5 4 3 28 28 H 1.08999 * 109.47649 * 300.00757 * 5 4 3 29 29 H 1.08996 * 109.47320 * 299.99748 * 6 4 3 30 30 H 1.08996 * 109.47441 * 60.00274 * 6 4 3 31 31 H 1.09008 * 109.46950 * 179.97438 * 6 4 3 32 32 H 1.08995 * 110.49123 * 358.71545 * 7 3 2 33 33 H 1.09007 * 110.59734 * 236.12987 * 7 3 2 34 34 H 1.08996 * 110.90960 * 220.92356 * 8 7 3 35 35 H 1.08999 * 110.93760 * 97.32281 * 8 7 3 36 36 H 0.97001 * 120.00105 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5692 1.4567 0.0445 5 6 4.0526 0.6240 1.2336 6 6 4.1227 0.8631 -1.2524 7 6 1.5457 2.1730 -1.2637 8 6 0.6534 3.3142 -0.7178 9 6 0.2983 2.7986 0.7001 10 1 -0.5247 2.0855 0.6544 11 6 -0.0477 3.9480 1.6114 12 1 -0.0578 4.9574 1.2275 13 6 -0.3514 3.7108 2.9352 14 7 -0.3395 2.4815 3.4026 15 14 -0.7810 5.1353 4.0647 16 1 -2.2467 5.3712 4.0285 17 1 -0.3663 4.8090 5.4528 18 1 -0.0715 6.3584 3.6106 19 8 1.5114 2.1478 1.1355 20 1 -0.3632 -1.0191 -0.1322 21 1 -0.3633 0.3950 0.9488 22 1 -0.3633 0.6241 -0.8164 23 1 1.8933 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 3.9201 2.4830 0.1532 26 1 3.7017 -0.4023 1.1250 27 1 5.1421 0.6337 1.2651 28 1 3.6582 1.0468 2.1576 29 1 3.7720 -0.1631 -1.3610 30 1 3.7785 1.4563 -2.0995 31 1 5.2123 0.8736 -1.2208 32 1 0.9621 1.4988 -1.8904 33 1 2.3868 2.5812 -1.8243 34 1 -0.2441 3.4307 -1.3253 35 1 1.2085 4.2507 -0.6635 36 1 -0.5535 2.3147 4.3339 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306358336.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:13 Heat of formation + Delta-G solvation = -82.290463 kcal Electronic energy + Delta-G solvation = -15526.752555 eV Core-core repulsion = 13202.578496 eV Total energy + Delta-G solvation = -2324.174059 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.90299 -36.36865 -34.38449 -33.05754 -32.40680 -29.53298 -27.87813 -26.51181 -23.94628 -22.86950 -21.92914 -19.53014 -18.58884 -16.90060 -16.59853 -16.22343 -15.93488 -15.26163 -14.88954 -14.40213 -13.82436 -13.59310 -13.51236 -13.12160 -12.92972 -12.82287 -12.72147 -12.51346 -12.33724 -12.23069 -12.07757 -11.82667 -11.66230 -11.53255 -11.00631 -10.93185 -10.81577 -10.64572 -9.60364 -8.12469 -6.30962 1.38645 1.40261 1.50528 2.41195 3.09410 3.64463 3.91884 3.93843 4.20230 4.28512 4.38535 4.45749 4.51405 4.56570 4.70328 4.80752 4.89070 4.90623 4.98014 5.02968 5.05496 5.12331 5.15533 5.20154 5.35472 5.39472 5.43086 5.49942 5.60342 5.67329 5.71258 5.86534 6.26533 6.68457 7.11909 7.43216 8.94935 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.037459 B = 0.010191 C = 0.009926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.300273 B = 2746.856924 C = 2820.213816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.087 3.913 4 C -0.086 4.086 5 C -0.137 4.137 6 C -0.138 4.138 7 C -0.137 4.137 8 C -0.146 4.146 9 C 0.195 3.805 10 H 0.020 0.980 11 C -0.555 4.555 12 H 0.057 0.943 13 C 0.025 3.975 14 N -0.897 5.897 15 Si 0.956 3.044 16 H -0.269 1.269 17 H -0.284 1.284 18 H -0.269 1.269 19 O -0.379 6.379 20 H 0.061 0.939 21 H 0.033 0.967 22 H 0.053 0.947 23 H 0.088 0.912 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.025 0.975 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.952 -4.306 -9.006 11.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C 0.047 3.953 4 C -0.104 4.104 5 C -0.194 4.194 6 C -0.195 4.195 7 C -0.175 4.175 8 C -0.184 4.184 9 C 0.140 3.860 10 H 0.037 0.963 11 C -0.593 4.593 12 H 0.075 0.925 13 C -0.177 4.177 14 N -0.534 5.534 15 Si 0.780 3.220 16 H -0.194 1.194 17 H -0.209 1.209 18 H -0.193 1.193 19 O -0.299 6.299 20 H 0.080 0.920 21 H 0.052 0.948 22 H 0.072 0.928 23 H 0.106 0.894 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.044 0.956 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.016 -4.413 -8.649 11.422 hybrid contribution -0.561 0.789 0.929 1.342 sum 5.455 -3.624 -7.720 10.124 Atomic orbital electron populations 1.21890 0.96739 1.00892 1.01123 1.21970 0.95655 0.96631 1.01818 1.22255 0.93695 0.92156 0.87172 1.21157 0.93084 0.99305 0.96893 1.21754 1.00539 0.99841 0.97294 1.21880 1.01046 1.01280 0.95316 1.23037 0.99727 0.97195 0.97507 1.23106 0.99184 0.98265 0.97852 1.20769 0.84662 0.90691 0.89915 0.96272 1.21486 1.47801 0.93699 0.96271 0.92457 1.25869 0.94102 0.97980 0.99732 1.70166 1.47324 1.20960 1.14989 0.85620 0.78735 0.79696 0.77916 1.19438 1.20938 1.19311 1.89147 1.40834 1.67074 1.32852 0.92014 0.94835 0.92761 0.89397 0.92913 0.93047 0.91997 0.91536 0.95606 0.91593 0.91699 0.91343 0.90025 0.89738 0.91389 0.92987 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.63 8.18 71.98 0.59 -5.04 16 2 C -0.12 -4.32 4.39 30.60 0.13 -4.19 16 3 C 0.09 3.39 0.57 -10.42 -0.01 3.38 16 4 C -0.09 -2.84 2.42 -10.79 -0.03 -2.87 16 5 C -0.14 -4.52 8.60 71.98 0.62 -3.90 16 6 C -0.14 -3.27 8.64 71.98 0.62 -2.65 16 7 C -0.14 -4.75 5.03 31.58 0.16 -4.59 16 8 C -0.15 -6.19 6.53 31.90 0.21 -5.98 16 9 C 0.20 10.29 2.34 30.53 0.07 10.36 16 10 H 0.02 1.10 5.06 -2.39 -0.01 1.09 16 11 C -0.56 -32.38 8.83 25.60 0.23 -32.15 16 12 H 0.06 3.26 7.78 -2.91 -0.02 3.24 16 13 C 0.03 1.47 5.43 84.65 0.46 1.93 16 14 N -0.90 -54.90 13.04 21.45 0.28 -54.62 16 15 Si 0.96 45.25 29.54 68.60 2.03 47.28 16 16 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 17 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 18 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 19 O -0.38 -19.91 9.68 -148.98 -1.44 -21.35 16 20 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 21 H 0.03 1.58 6.35 -2.38 -0.02 1.57 16 22 H 0.05 1.95 5.95 -2.39 -0.01 1.94 16 23 H 0.09 2.43 6.74 -2.39 -0.02 2.42 16 24 H 0.05 1.96 6.28 -2.39 -0.01 1.94 16 25 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 26 H 0.06 1.88 6.34 -2.38 -0.02 1.87 16 27 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.02 1.03 7.91 -2.39 -0.02 1.01 16 29 H 0.07 1.42 6.68 -2.39 -0.02 1.40 16 30 H 0.06 1.42 6.24 -2.39 -0.01 1.41 16 31 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.08 2.49 6.51 -2.39 -0.02 2.47 16 33 H 0.08 2.52 6.14 -2.38 -0.01 2.51 16 34 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.05 2.25 8.05 -2.39 -0.02 2.23 16 36 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -66.08 269.58 4.96 -61.11 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 1.04 Total: 13.27 kcal Atomic # 6 Polarization: -48.74 SS G_CDS: 3.06 Total: -45.69 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.28 Total: -54.62 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -1.44 Total: -21.35 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -66.08 4.96 -61.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306358336.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.176 kcal (2) G-P(sol) polarization free energy of solvation -66.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds