Wall clock time and date at job start Mon Mar 30 2020 03:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.82470 * 185.18431 * 3 2 1 5 5 C 1.52996 * 109.47230 * 305.70862 * 4 3 2 6 6 C 1.53006 * 109.46754 * 65.70576 * 4 3 2 7 7 C 1.54379 * 109.83160 * 306.17027 * 3 2 1 8 8 C 1.55302 * 102.25440 * 98.15223 * 7 3 2 9 9 C 1.54940 * 100.94185 * 34.13523 * 8 7 3 10 10 H 1.09001 * 110.31081 * 82.46557 * 9 8 7 11 11 C 1.50697 * 110.39408 * 204.59672 * 9 8 7 12 12 H 1.08001 * 120.00195 * 357.20895 * 11 9 8 13 13 C 1.37888 * 120.00116 * 177.21519 * 11 9 8 14 14 N 1.31512 * 119.99671 * 359.97438 * 13 11 9 15 15 Si 1.86794 * 119.99743 * 179.97438 * 13 11 9 16 16 H 1.48508 * 109.46943 * 90.00132 * 15 13 11 17 17 H 1.48503 * 109.46902 * 209.99786 * 15 13 11 18 18 H 1.48496 * 109.47666 * 329.99990 * 15 13 11 19 19 O 1.43243 * 109.82718 * 64.29913 * 3 2 1 20 20 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 23 23 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 24 24 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 25 25 H 1.08993 * 109.47493 * 185.69895 * 4 3 2 26 26 H 1.08994 * 109.47464 * 59.99654 * 5 4 3 27 27 H 1.09006 * 109.47159 * 179.97438 * 5 4 3 28 28 H 1.09004 * 109.46871 * 299.99170 * 5 4 3 29 29 H 1.08991 * 109.47597 * 59.99857 * 6 4 3 30 30 H 1.09003 * 109.46998 * 180.02562 * 6 4 3 31 31 H 1.09004 * 109.47048 * 299.99797 * 6 4 3 32 32 H 1.09003 * 110.84636 * 216.34983 * 7 3 2 33 33 H 1.09007 * 110.84836 * 339.96032 * 7 3 2 34 34 H 1.08994 * 111.12655 * 276.21085 * 8 7 3 35 35 H 1.09008 * 111.16219 * 152.06567 * 8 7 3 36 36 H 0.97007 * 119.99632 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5644 1.4540 -0.1301 5 6 4.1764 0.5810 0.9673 6 6 3.9633 0.9041 -1.5010 7 6 1.4065 2.2220 -1.1723 8 6 0.2360 2.9692 -0.4771 9 6 0.8535 3.2522 0.9155 10 1 1.4795 4.1437 0.8777 11 6 -0.2321 3.4196 1.9472 12 1 -1.2698 3.3809 1.6503 13 6 0.0994 3.6224 3.2702 14 7 1.3630 3.6691 3.6317 15 14 -1.2463 3.8306 4.5488 16 1 -1.6131 2.5022 5.1022 17 1 -0.7569 4.7053 5.6445 18 1 -2.4388 4.4497 3.9163 19 8 1.6510 2.0954 1.2142 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 3.9302 2.4756 -0.0280 26 1 3.8107 -0.4407 0.8651 27 1 5.2625 0.5887 0.8743 28 1 3.8922 0.9727 1.9440 29 1 3.5273 1.5259 -2.2828 30 1 5.0494 0.9118 -1.5936 31 1 3.5976 -0.1176 -1.6032 32 1 2.1190 2.9283 -1.5986 33 1 1.0322 1.5391 -1.9351 34 1 -0.6436 2.3309 -0.3945 35 1 -0.0026 3.8972 -0.9969 36 1 1.5962 3.8114 4.5625 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306358337.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:17 Heat of formation + Delta-G solvation = -68.699048 kcal Electronic energy + Delta-G solvation = -15523.263420 eV Core-core repulsion = 13199.678729 eV Total energy + Delta-G solvation = -2323.584691 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.23323 -34.75521 -32.36470 -31.71774 -30.57490 -27.59046 -26.56111 -24.69027 -22.39783 -21.34445 -20.18938 -17.90701 -16.45814 -15.54489 -15.02537 -14.49138 -13.74325 -13.62404 -13.43504 -12.65280 -12.36806 -11.99418 -11.90534 -11.63696 -11.52922 -11.29633 -11.05096 -10.89377 -10.70593 -10.50352 -10.35594 -10.27233 -10.08173 -9.98615 -9.51615 -9.32360 -8.96540 -8.49687 -7.74051 -5.94505 -4.06785 3.33641 3.40117 3.42489 4.46591 4.97820 5.32359 5.37150 5.45580 5.69184 5.69923 5.73252 5.89256 5.95932 6.03955 6.07599 6.18357 6.25366 6.30446 6.34691 6.42218 6.51149 6.58779 6.69059 6.75934 6.76310 6.87893 6.92774 7.04599 7.11419 7.13591 7.68442 7.94892 8.35073 8.74824 9.14029 9.63559 11.12748 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.037668 B = 0.010527 C = 0.009787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.159440 B = 2659.262808 C = 2860.352143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C 0.107 3.893 4 C -0.097 4.097 5 C -0.140 4.140 6 C -0.146 4.146 7 C -0.145 4.145 8 C -0.152 4.152 9 C 0.213 3.787 10 H 0.022 0.978 11 C -0.532 4.532 12 H 0.060 0.940 13 C 0.079 3.921 14 N -0.862 5.862 15 Si 0.887 3.113 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 O -0.342 6.342 20 H 0.036 0.964 21 H 0.074 0.926 22 H 0.050 0.950 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.039 0.961 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.381 -5.266 -8.114 9.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C 0.066 3.934 4 C -0.116 4.116 5 C -0.197 4.197 6 C -0.203 4.203 7 C -0.183 4.183 8 C -0.190 4.190 9 C 0.158 3.842 10 H 0.040 0.960 11 C -0.569 4.569 12 H 0.079 0.921 13 C -0.127 4.127 14 N -0.498 5.498 15 Si 0.714 3.286 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 O -0.261 6.261 20 H 0.055 0.945 21 H 0.093 0.907 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.566 -5.301 -7.755 9.738 hybrid contribution -0.675 0.169 0.514 0.865 sum 1.891 -5.131 -7.241 9.074 Atomic orbital electron populations 1.21876 0.96049 0.99898 1.03060 1.21782 0.96243 0.96839 1.00740 1.21844 0.91701 0.92478 0.87370 1.21383 0.96146 0.99788 0.94236 1.21763 0.98512 0.99247 1.00156 1.21916 1.00224 1.00892 0.97259 1.23140 0.98304 0.98935 0.97881 1.23464 0.97759 0.99024 0.98715 1.20440 0.88965 0.85267 0.89570 0.96034 1.21095 0.92082 1.51096 0.92651 0.92134 1.25047 0.95111 0.93947 0.98583 1.70044 1.16045 1.46843 1.16899 0.86698 0.82349 0.78068 0.81439 1.20567 1.21215 1.19851 1.88825 1.70694 1.42149 1.24474 0.94477 0.90671 0.93153 0.92806 0.91828 0.91417 0.93257 0.94208 0.91313 0.92892 0.93424 0.92843 0.92064 0.91989 0.91150 0.92602 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.34 37.16 0.31 -2.40 16 2 C -0.12 -2.11 4.32 -26.73 -0.12 -2.23 16 3 C 0.11 2.11 0.51 -89.90 -0.05 2.07 16 4 C -0.10 -1.72 2.39 -90.62 -0.22 -1.93 16 5 C -0.14 -2.42 8.60 37.16 0.32 -2.10 16 6 C -0.15 -2.06 8.66 37.16 0.32 -1.73 16 7 C -0.14 -2.64 4.38 -24.79 -0.11 -2.75 16 8 C -0.15 -3.18 5.93 -24.49 -0.15 -3.33 16 9 C 0.21 5.51 3.26 -26.86 -0.09 5.42 16 10 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 11 C -0.53 -14.94 8.81 -34.44 -0.30 -15.24 16 12 H 0.06 1.66 7.77 -52.49 -0.41 1.25 16 13 C 0.08 2.25 5.42 -17.82 -0.10 2.15 16 14 N -0.86 -25.77 12.93 55.43 0.72 -25.05 16 15 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 O -0.34 -8.70 9.03 -35.23 -0.32 -9.02 16 20 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.07 1.60 7.67 -51.93 -0.40 1.20 16 22 H 0.05 0.85 5.51 -51.93 -0.29 0.56 16 23 H 0.05 0.83 6.40 -51.93 -0.33 0.50 16 24 H 0.06 1.18 6.69 -51.93 -0.35 0.84 16 25 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 26 H 0.05 0.79 6.49 -51.93 -0.34 0.45 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 1.40 7.89 -51.93 -0.41 0.99 16 29 H 0.05 0.71 6.74 -51.93 -0.35 0.36 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.71 6.51 -51.93 -0.34 0.37 16 32 H 0.06 1.06 7.27 -51.93 -0.38 0.69 16 33 H 0.06 1.00 7.02 -51.93 -0.36 0.63 16 34 H 0.07 1.46 5.94 -51.93 -0.31 1.15 16 35 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 272.49 15.07 4.11 4.11 Total: -1.00 -29.59 272.49 -6.61 -36.20 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -5.93 Total: -0.72 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: -0.17 Total: -22.08 kcal Atomic # 7 Polarization: -25.77 SS G_CDS: 0.72 Total: -25.05 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.32 Total: -9.02 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.59 -6.61 -36.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306358337.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.495 kcal (2) G-P(sol) polarization free energy of solvation -29.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds