Wall clock time and date at job start Mon Mar 30 2020 03:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.82470 * 185.18431 * 3 2 1 5 5 C 1.52996 * 109.47230 * 305.70862 * 4 3 2 6 6 C 1.53006 * 109.46754 * 65.70576 * 4 3 2 7 7 C 1.54379 * 109.83160 * 306.17027 * 3 2 1 8 8 C 1.55302 * 102.25440 * 98.15223 * 7 3 2 9 9 C 1.54940 * 100.94185 * 34.13523 * 8 7 3 10 10 H 1.09001 * 110.31081 * 82.46557 * 9 8 7 11 11 C 1.50697 * 110.39408 * 204.59672 * 9 8 7 12 12 H 1.08001 * 120.00195 * 357.20895 * 11 9 8 13 13 C 1.37888 * 120.00116 * 177.21519 * 11 9 8 14 14 N 1.31512 * 119.99671 * 359.97438 * 13 11 9 15 15 Si 1.86794 * 119.99743 * 179.97438 * 13 11 9 16 16 H 1.48508 * 109.46943 * 90.00132 * 15 13 11 17 17 H 1.48503 * 109.46902 * 209.99786 * 15 13 11 18 18 H 1.48496 * 109.47666 * 329.99990 * 15 13 11 19 19 O 1.43243 * 109.82718 * 64.29913 * 3 2 1 20 20 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 23 23 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 24 24 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 25 25 H 1.08993 * 109.47493 * 185.69895 * 4 3 2 26 26 H 1.08994 * 109.47464 * 59.99654 * 5 4 3 27 27 H 1.09006 * 109.47159 * 179.97438 * 5 4 3 28 28 H 1.09004 * 109.46871 * 299.99170 * 5 4 3 29 29 H 1.08991 * 109.47597 * 59.99857 * 6 4 3 30 30 H 1.09003 * 109.46998 * 180.02562 * 6 4 3 31 31 H 1.09004 * 109.47048 * 299.99797 * 6 4 3 32 32 H 1.09003 * 110.84636 * 216.34983 * 7 3 2 33 33 H 1.09007 * 110.84836 * 339.96032 * 7 3 2 34 34 H 1.08994 * 111.12655 * 276.21085 * 8 7 3 35 35 H 1.09008 * 111.16219 * 152.06567 * 8 7 3 36 36 H 0.97007 * 119.99632 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5644 1.4540 -0.1301 5 6 4.1764 0.5810 0.9673 6 6 3.9633 0.9041 -1.5010 7 6 1.4065 2.2220 -1.1723 8 6 0.2360 2.9692 -0.4771 9 6 0.8535 3.2522 0.9155 10 1 1.4795 4.1437 0.8777 11 6 -0.2321 3.4196 1.9472 12 1 -1.2698 3.3809 1.6503 13 6 0.0994 3.6224 3.2702 14 7 1.3630 3.6691 3.6317 15 14 -1.2463 3.8306 4.5488 16 1 -1.6131 2.5022 5.1022 17 1 -0.7569 4.7053 5.6445 18 1 -2.4388 4.4497 3.9163 19 8 1.6510 2.0954 1.2142 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 3.9302 2.4756 -0.0280 26 1 3.8107 -0.4407 0.8651 27 1 5.2625 0.5887 0.8743 28 1 3.8922 0.9727 1.9440 29 1 3.5273 1.5259 -2.2828 30 1 5.0494 0.9118 -1.5936 31 1 3.5976 -0.1176 -1.6032 32 1 2.1190 2.9283 -1.5986 33 1 1.0322 1.5391 -1.9351 34 1 -0.6436 2.3309 -0.3945 35 1 -0.0026 3.8972 -0.9969 36 1 1.5962 3.8114 4.5625 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306358337.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:16 Heat of formation + Delta-G solvation = -86.299035 kcal Electronic energy + Delta-G solvation = -15524.026613 eV Core-core repulsion = 13199.678729 eV Total energy + Delta-G solvation = -2324.347884 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.85649 -36.39844 -34.37715 -33.31155 -32.22785 -29.40325 -27.86236 -26.47887 -24.04807 -22.82009 -21.98401 -19.46496 -18.53961 -17.19901 -16.71861 -16.31763 -15.35218 -15.18927 -14.94620 -14.23309 -14.09056 -13.75148 -13.43931 -13.01677 -12.93474 -12.82592 -12.72811 -12.51897 -12.37568 -12.27513 -12.03943 -11.85308 -11.65588 -11.53533 -11.10827 -10.89586 -10.83096 -10.63907 -9.61111 -8.11331 -6.30933 1.38913 1.40253 1.50465 2.41301 3.09241 3.60369 3.91554 3.92375 4.18523 4.27793 4.38887 4.46432 4.54033 4.57212 4.72281 4.79236 4.87514 4.92938 4.95963 5.02453 5.03511 5.11284 5.16422 5.23499 5.32444 5.38438 5.44245 5.54639 5.62147 5.67103 5.73222 5.81862 6.24756 6.68040 7.21287 7.45467 8.96382 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.037668 B = 0.010527 C = 0.009787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.159440 B = 2659.262808 C = 2860.352143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C 0.090 3.910 4 C -0.098 4.098 5 C -0.134 4.134 6 C -0.136 4.136 7 C -0.133 4.133 8 C -0.144 4.144 9 C 0.207 3.793 10 H -0.020 1.020 11 C -0.549 4.549 12 H 0.062 0.938 13 C 0.023 3.977 14 N -0.902 5.902 15 Si 0.956 3.044 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.261 1.261 19 O -0.377 6.377 20 H 0.061 0.939 21 H 0.030 0.970 22 H 0.062 0.938 23 H 0.091 0.909 24 H 0.049 0.951 25 H 0.040 0.960 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.023 0.977 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.943 -6.694 -9.979 12.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C 0.050 3.950 4 C -0.117 4.117 5 C -0.191 4.191 6 C -0.193 4.193 7 C -0.170 4.170 8 C -0.182 4.182 9 C 0.151 3.849 10 H -0.003 1.003 11 C -0.586 4.586 12 H 0.080 0.920 13 C -0.179 4.179 14 N -0.540 5.540 15 Si 0.780 3.220 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.186 1.186 19 O -0.296 6.296 20 H 0.080 0.920 21 H 0.050 0.950 22 H 0.081 0.919 23 H 0.109 0.891 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.043 0.957 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.120 -6.731 -9.637 11.944 hybrid contribution -0.494 0.601 1.069 1.322 sum 1.626 -6.130 -8.568 10.659 Atomic orbital electron populations 1.21805 0.96082 1.01042 1.01470 1.21784 0.96177 0.95445 1.01811 1.22268 0.93249 0.93426 0.86040 1.21382 0.94715 0.98706 0.96894 1.21704 1.00012 0.99682 0.97750 1.21842 1.01528 1.01559 0.94415 1.23112 0.97033 0.99134 0.97725 1.23332 0.98610 1.00073 0.96152 1.20257 0.88205 0.84392 0.92026 1.00280 1.21508 0.92795 1.50665 0.93664 0.91999 1.25911 0.97362 0.93710 1.00885 1.70197 1.18226 1.48367 1.17192 0.85617 0.79642 0.78066 0.78646 1.20259 1.20752 1.18553 1.88739 1.70962 1.41945 1.28003 0.91980 0.95042 0.91869 0.89066 0.93238 0.94124 0.91708 0.91990 0.95738 0.91919 0.91759 0.91238 0.91290 0.88594 0.90928 0.91496 0.93236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.95 8.34 71.98 0.60 -4.35 16 2 C -0.11 -3.83 4.32 30.60 0.13 -3.70 16 3 C 0.09 3.48 0.51 -10.32 -0.01 3.48 16 4 C -0.10 -3.38 2.39 -10.79 -0.03 -3.40 16 5 C -0.13 -4.59 8.60 71.98 0.62 -3.97 16 6 C -0.14 -3.33 8.66 71.98 0.62 -2.71 16 7 C -0.13 -4.54 4.38 31.85 0.14 -4.40 16 8 C -0.14 -5.95 5.93 32.05 0.19 -5.76 16 9 C 0.21 11.09 3.26 30.51 0.10 11.19 16 10 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 11 C -0.55 -31.76 8.81 25.60 0.23 -31.54 16 12 H 0.06 3.45 7.77 -2.91 -0.02 3.43 16 13 C 0.02 1.34 5.42 84.66 0.46 1.80 16 14 N -0.90 -56.24 12.93 21.45 0.28 -55.97 16 15 Si 0.96 45.26 29.54 68.60 2.03 47.29 16 16 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 17 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 18 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 19 O -0.38 -19.82 9.03 -148.98 -1.35 -21.17 16 20 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 21 H 0.03 1.32 7.67 -2.39 -0.02 1.30 16 22 H 0.06 1.94 5.51 -2.38 -0.01 1.92 16 23 H 0.09 2.38 6.40 -2.39 -0.02 2.36 16 24 H 0.05 1.78 6.69 -2.39 -0.02 1.76 16 25 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.06 1.98 6.49 -2.39 -0.02 1.96 16 27 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 28 H 0.02 1.02 7.89 -2.38 -0.02 1.00 16 29 H 0.06 1.43 6.74 -2.39 -0.02 1.41 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 1.49 6.51 -2.39 -0.02 1.48 16 32 H 0.07 2.25 7.27 -2.39 -0.02 2.23 16 33 H 0.10 2.65 7.02 -2.38 -0.02 2.63 16 34 H 0.07 2.94 5.94 -2.39 -0.01 2.93 16 35 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 36 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 Total: -1.00 -67.15 272.49 5.05 -62.10 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 1.03 Total: 11.10 kcal Atomic # 6 Polarization: -46.41 SS G_CDS: 3.06 Total: -43.35 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: 0.28 Total: -55.97 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -1.35 Total: -21.17 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -67.15 5.05 -62.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306358337.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.198 kcal (2) G-P(sol) polarization free energy of solvation -67.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds