Wall clock time and date at job start Mon Mar 30 2020 03:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46847 * 2 1 4 4 C 1.52997 * 109.82129 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47127 * 59.30362 * 4 3 2 6 6 C 1.52997 * 109.47232 * 299.30240 * 4 3 2 7 7 C 1.54377 * 109.82983 * 59.11802 * 3 2 1 8 8 C 1.55531 * 102.14754 * 219.05429 * 7 3 2 9 9 C 1.54950 * 100.95175 * 34.15113 * 8 7 3 10 10 H 1.09000 * 110.30506 * 82.44939 * 9 8 7 11 11 C 1.50694 * 110.39305 * 204.57740 * 9 8 7 12 12 H 1.08005 * 120.00301 * 357.21698 * 11 9 8 13 13 C 1.37877 * 119.99909 * 177.21562 * 11 9 8 14 14 N 1.31515 * 120.00045 * 359.97438 * 13 11 9 15 15 Si 1.86804 * 120.00272 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.46805 * 89.99667 * 15 13 11 17 17 H 1.48493 * 109.47146 * 209.99980 * 15 13 11 18 18 H 1.48501 * 109.46708 * 330.00114 * 15 13 11 19 19 O 1.43232 * 109.83065 * 300.88690 * 3 2 1 20 20 H 1.08999 * 109.47248 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47232 * 299.99939 * 1 2 3 22 22 H 1.08995 * 109.47555 * 59.99944 * 1 2 3 23 23 H 1.09003 * 109.47026 * 240.00818 * 2 1 3 24 24 H 1.08995 * 109.47555 * 120.00056 * 2 1 3 25 25 H 1.09001 * 109.47289 * 179.30316 * 4 3 2 26 26 H 1.09001 * 109.47002 * 299.99574 * 5 4 3 27 27 H 1.08993 * 109.46955 * 60.00011 * 5 4 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.47140 * 180.02562 * 6 4 3 30 30 H 1.09001 * 109.47230 * 299.99295 * 6 4 3 31 31 H 1.09001 * 109.47375 * 60.00133 * 6 4 3 32 32 H 1.09005 * 110.84900 * 337.22593 * 7 3 2 33 33 H 1.09000 * 110.84814 * 100.84820 * 7 3 2 34 34 H 1.09002 * 111.14171 * 276.22320 * 8 7 3 35 35 H 1.09002 * 111.14466 * 152.08288 * 8 7 3 36 36 H 0.96997 * 120.00212 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4520 -0.0006 5 6 4.0839 0.7189 -1.2414 6 6 4.0847 0.7490 1.2569 7 6 1.5117 2.1847 1.2463 8 6 1.1886 3.5948 0.6751 9 6 0.7181 3.2319 -0.7559 10 1 -0.3293 2.9303 -0.7447 11 6 0.9148 4.4014 -1.6857 12 1 1.2915 5.3384 -1.3028 13 6 0.6139 4.2753 -3.0253 14 7 0.1556 3.1342 -3.4918 15 14 0.8584 5.7248 -4.1781 16 1 2.2333 5.6855 -4.7379 17 1 -0.1291 5.6492 -5.2846 18 1 0.6653 6.9918 -3.4280 19 8 1.5497 2.1312 -1.1563 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5137 -0.8901 24 1 1.8934 -0.5138 0.8899 25 1 3.9269 2.4818 -0.0131 26 1 3.7269 -0.3109 -1.2289 27 1 3.7171 1.2198 -2.1373 28 1 5.1739 0.7260 -1.2421 29 1 5.1747 0.7561 1.2567 30 1 3.7187 1.2713 2.1409 31 1 3.7278 -0.2809 1.2695 32 1 0.6112 1.7055 1.6306 33 1 2.2800 2.2440 2.0172 34 1 2.0797 4.2219 0.6484 35 1 0.3903 4.0749 1.2412 36 1 -0.0564 3.0456 -4.4341 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306358338.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:20 Heat of formation + Delta-G solvation = -67.116082 kcal Electronic energy + Delta-G solvation = -15501.629290 eV Core-core repulsion = 13178.113241 eV Total energy + Delta-G solvation = -2323.516048 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.18399 -34.72295 -32.36659 -31.59303 -30.80192 -27.50643 -26.56928 -24.62050 -22.48276 -21.35529 -20.19177 -17.91439 -16.47708 -15.25791 -14.92898 -14.47522 -14.16535 -13.67973 -13.53673 -12.66630 -12.36005 -12.06669 -11.77003 -11.61420 -11.51170 -11.13671 -10.97844 -10.87171 -10.73515 -10.57836 -10.47354 -10.32208 -10.03839 -9.94288 -9.44393 -9.35243 -8.95807 -8.49684 -7.72941 -5.94350 -4.06538 3.33880 3.40276 3.42764 4.46903 4.97882 5.32521 5.37373 5.45409 5.62462 5.68668 5.74969 5.90154 5.98498 6.04532 6.06557 6.18450 6.20919 6.30742 6.35128 6.43743 6.54259 6.61705 6.69157 6.71949 6.76962 6.87298 6.94029 7.06428 7.10544 7.12412 7.69337 7.95216 8.35574 8.75206 9.14303 9.63800 11.12820 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.034886 B = 0.010483 C = 0.010123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.421207 B = 2670.274686 C = 2765.292629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.108 3.892 4 C -0.094 4.094 5 C -0.139 4.139 6 C -0.148 4.148 7 C -0.156 4.156 8 C -0.148 4.148 9 C 0.213 3.787 10 H 0.025 0.975 11 C -0.534 4.534 12 H 0.060 0.940 13 C 0.079 3.921 14 N -0.862 5.862 15 Si 0.887 3.113 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 O -0.341 6.341 20 H 0.039 0.961 21 H 0.048 0.952 22 H 0.072 0.928 23 H 0.063 0.937 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.038 0.962 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.014 -4.872 7.643 9.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C 0.067 3.933 4 C -0.112 4.112 5 C -0.196 4.196 6 C -0.205 4.205 7 C -0.193 4.193 8 C -0.186 4.186 9 C 0.158 3.842 10 H 0.042 0.958 11 C -0.571 4.571 12 H 0.078 0.922 13 C -0.126 4.126 14 N -0.498 5.498 15 Si 0.715 3.285 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 O -0.261 6.261 20 H 0.058 0.942 21 H 0.066 0.934 22 H 0.091 0.909 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.984 -5.027 7.266 9.692 hybrid contribution 0.129 0.798 -0.450 0.925 sum 4.113 -4.229 6.816 9.015 Atomic orbital electron populations 1.21796 0.96102 1.00078 1.02824 1.21841 0.96184 0.97185 1.00804 1.21797 0.91825 0.91926 0.87785 1.21300 0.95781 0.99713 0.94449 1.21737 0.98757 1.00007 0.99086 1.21983 0.99996 1.00553 0.97955 1.23364 1.00599 0.97386 0.97936 1.23348 1.00599 0.95220 0.99388 1.20457 0.90368 0.84997 0.88402 0.95766 1.21121 1.45974 0.96444 0.93581 0.92190 1.25036 0.93968 0.95374 0.98263 1.70036 1.41935 1.23820 1.14020 0.86695 0.78011 0.83113 0.80718 1.20573 1.21208 1.19865 1.88821 1.66816 1.44556 1.25858 0.94206 0.93352 0.90902 0.91816 0.92749 0.91314 0.93275 0.91297 0.94254 0.93410 0.92791 0.92755 0.91382 0.91730 0.91931 0.92446 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.50 37.16 0.35 -2.35 16 2 C -0.12 -2.18 4.54 -26.73 -0.12 -2.30 16 3 C 0.11 2.12 0.37 -89.90 -0.03 2.09 16 4 C -0.09 -1.67 2.48 -90.62 -0.22 -1.89 16 5 C -0.14 -2.44 8.70 37.16 0.32 -2.11 16 6 C -0.15 -2.09 8.62 37.16 0.32 -1.77 16 7 C -0.16 -2.84 5.68 -24.66 -0.14 -2.98 16 8 C -0.15 -3.13 6.54 -24.36 -0.16 -3.29 16 9 C 0.21 5.51 3.26 -26.86 -0.09 5.42 16 10 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 11 C -0.53 -15.12 8.81 -34.44 -0.30 -15.42 16 12 H 0.06 1.66 7.77 -52.48 -0.41 1.25 16 13 C 0.08 2.26 5.42 -17.82 -0.10 2.17 16 14 N -0.86 -25.68 12.93 55.43 0.72 -24.96 16 15 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 O -0.34 -8.65 8.60 -35.23 -0.30 -8.95 16 20 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.05 0.82 6.04 -51.93 -0.31 0.50 16 22 H 0.07 1.57 7.68 -51.93 -0.40 1.17 16 23 H 0.06 1.17 6.45 -51.93 -0.33 0.84 16 24 H 0.05 0.83 6.48 -51.93 -0.34 0.50 16 25 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 26 H 0.05 0.80 6.44 -51.93 -0.33 0.47 16 27 H 0.07 1.43 7.74 -51.93 -0.40 1.02 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.72 6.13 -51.93 -0.32 0.41 16 31 H 0.05 0.72 6.48 -51.93 -0.34 0.39 16 32 H 0.07 1.18 5.71 -51.93 -0.30 0.88 16 33 H 0.06 1.04 5.81 -51.93 -0.30 0.74 16 34 H 0.06 1.33 8.05 -51.93 -0.42 0.91 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 274.24 15.07 4.13 4.13 Total: -1.00 -29.62 274.24 -6.51 -36.14 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.87 Total: -0.53 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: -0.17 Total: -22.44 kcal Atomic # 7 Polarization: -25.68 SS G_CDS: 0.72 Total: -24.96 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -0.30 Total: -8.95 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.62 -6.51 -36.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306358338.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.977 kcal (2) G-P(sol) polarization free energy of solvation -29.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds