Wall clock time and date at job start Mon Mar 30 2020 03:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46847 * 2 1 4 4 C 1.52997 * 109.82129 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47127 * 59.30362 * 4 3 2 6 6 C 1.52997 * 109.47232 * 299.30240 * 4 3 2 7 7 C 1.54377 * 109.82983 * 59.11802 * 3 2 1 8 8 C 1.55531 * 102.14754 * 219.05429 * 7 3 2 9 9 C 1.54950 * 100.95175 * 34.15113 * 8 7 3 10 10 H 1.09000 * 110.30506 * 82.44939 * 9 8 7 11 11 C 1.50694 * 110.39305 * 204.57740 * 9 8 7 12 12 H 1.08005 * 120.00301 * 357.21698 * 11 9 8 13 13 C 1.37877 * 119.99909 * 177.21562 * 11 9 8 14 14 N 1.31515 * 120.00045 * 359.97438 * 13 11 9 15 15 Si 1.86804 * 120.00272 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.46805 * 89.99667 * 15 13 11 17 17 H 1.48493 * 109.47146 * 209.99980 * 15 13 11 18 18 H 1.48501 * 109.46708 * 330.00114 * 15 13 11 19 19 O 1.43232 * 109.83065 * 300.88690 * 3 2 1 20 20 H 1.08999 * 109.47248 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47232 * 299.99939 * 1 2 3 22 22 H 1.08995 * 109.47555 * 59.99944 * 1 2 3 23 23 H 1.09003 * 109.47026 * 240.00818 * 2 1 3 24 24 H 1.08995 * 109.47555 * 120.00056 * 2 1 3 25 25 H 1.09001 * 109.47289 * 179.30316 * 4 3 2 26 26 H 1.09001 * 109.47002 * 299.99574 * 5 4 3 27 27 H 1.08993 * 109.46955 * 60.00011 * 5 4 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.47140 * 180.02562 * 6 4 3 30 30 H 1.09001 * 109.47230 * 299.99295 * 6 4 3 31 31 H 1.09001 * 109.47375 * 60.00133 * 6 4 3 32 32 H 1.09005 * 110.84900 * 337.22593 * 7 3 2 33 33 H 1.09000 * 110.84814 * 100.84820 * 7 3 2 34 34 H 1.09002 * 111.14171 * 276.22320 * 8 7 3 35 35 H 1.09002 * 111.14466 * 152.08288 * 8 7 3 36 36 H 0.96997 * 120.00212 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4520 -0.0006 5 6 4.0839 0.7189 -1.2414 6 6 4.0847 0.7490 1.2569 7 6 1.5117 2.1847 1.2463 8 6 1.1886 3.5948 0.6751 9 6 0.7181 3.2319 -0.7559 10 1 -0.3293 2.9303 -0.7447 11 6 0.9148 4.4014 -1.6857 12 1 1.2915 5.3384 -1.3028 13 6 0.6139 4.2753 -3.0253 14 7 0.1556 3.1342 -3.4918 15 14 0.8584 5.7248 -4.1781 16 1 2.2333 5.6855 -4.7379 17 1 -0.1291 5.6492 -5.2846 18 1 0.6653 6.9918 -3.4280 19 8 1.5497 2.1312 -1.1563 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5137 -0.8901 24 1 1.8934 -0.5138 0.8899 25 1 3.9269 2.4818 -0.0131 26 1 3.7269 -0.3109 -1.2289 27 1 3.7171 1.2198 -2.1373 28 1 5.1739 0.7260 -1.2421 29 1 5.1747 0.7561 1.2567 30 1 3.7187 1.2713 2.1409 31 1 3.7278 -0.2809 1.2695 32 1 0.6112 1.7055 1.6306 33 1 2.2800 2.2440 2.0172 34 1 2.0797 4.2219 0.6484 35 1 0.3903 4.0749 1.2412 36 1 -0.0564 3.0456 -4.4341 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306358338.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:20 Heat of formation + Delta-G solvation = -84.589720 kcal Electronic energy + Delta-G solvation = -15502.387003 eV Core-core repulsion = 13178.113241 eV Total energy + Delta-G solvation = -2324.273762 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.80435 -36.37581 -34.37369 -33.12761 -32.51752 -29.35142 -27.86147 -26.41428 -24.12689 -22.79366 -22.04256 -19.44615 -18.59238 -16.92153 -16.68496 -16.19505 -15.75319 -15.19478 -15.07246 -14.50691 -13.88346 -13.68831 -13.39304 -13.06776 -12.94728 -12.82882 -12.58756 -12.55302 -12.37102 -12.29032 -12.09457 -11.96239 -11.61828 -11.52145 -11.04069 -10.89069 -10.84388 -10.63964 -9.58782 -8.11454 -6.31373 1.38483 1.39911 1.50070 2.41076 3.09135 3.60110 3.90459 3.94642 4.16633 4.23577 4.35519 4.50943 4.52875 4.55660 4.69440 4.76255 4.87463 4.89929 4.94539 5.02182 5.08008 5.09973 5.17138 5.21269 5.34487 5.39036 5.41882 5.50233 5.62794 5.69216 5.72233 5.83299 6.25192 6.67671 7.22060 7.45170 8.95808 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.034886 B = 0.010483 C = 0.010123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.421207 B = 2670.274686 C = 2765.292629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C 0.091 3.909 4 C -0.094 4.094 5 C -0.134 4.134 6 C -0.139 4.139 7 C -0.143 4.143 8 C -0.142 4.142 9 C 0.208 3.792 10 H -0.011 1.011 11 C -0.556 4.556 12 H 0.059 0.941 13 C 0.025 3.975 14 N -0.899 5.899 15 Si 0.955 3.045 16 H -0.277 1.277 17 H -0.281 1.281 18 H -0.263 1.263 19 O -0.375 6.375 20 H 0.065 0.935 21 H 0.058 0.942 22 H 0.024 0.976 23 H 0.052 0.948 24 H 0.092 0.908 25 H 0.047 0.953 26 H 0.060 0.940 27 H 0.023 0.977 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.203 -5.364 9.423 12.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C 0.051 3.949 4 C -0.113 4.113 5 C -0.191 4.191 6 C -0.196 4.196 7 C -0.180 4.180 8 C -0.180 4.180 9 C 0.153 3.847 10 H 0.006 0.994 11 C -0.594 4.594 12 H 0.077 0.923 13 C -0.177 4.177 14 N -0.536 5.536 15 Si 0.780 3.220 16 H -0.203 1.203 17 H -0.206 1.206 18 H -0.187 1.187 19 O -0.295 6.295 20 H 0.084 0.916 21 H 0.077 0.923 22 H 0.043 0.957 23 H 0.070 0.930 24 H 0.110 0.890 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.042 0.958 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.179 -5.516 9.063 11.806 hybrid contribution -0.239 0.910 -0.987 1.364 sum 4.940 -4.606 8.076 10.528 Atomic orbital electron populations 1.21730 0.96523 1.01143 1.00898 1.21838 0.95767 0.95986 1.02002 1.22215 0.93254 0.92695 0.86747 1.21301 0.94309 0.99140 0.96553 1.21685 1.00189 1.00037 0.97229 1.21911 1.01130 1.00751 0.95793 1.23347 1.02010 0.94846 0.97827 1.23226 1.00629 0.97273 0.96869 1.20261 0.88935 0.84755 0.90784 0.99391 1.21557 1.45736 0.97500 0.94591 0.92274 1.25884 0.93673 0.98115 1.00013 1.70184 1.43213 1.25970 1.14239 0.85626 0.77890 0.79959 0.78540 1.20315 1.20602 1.18673 1.88736 1.66773 1.44878 1.29074 0.91618 0.92337 0.95719 0.92953 0.88975 0.93474 0.92098 0.95758 0.91890 0.91654 0.91612 0.91408 0.90237 0.88584 0.92330 0.91159 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.12 9.50 71.98 0.68 -4.44 16 2 C -0.12 -4.00 4.54 30.59 0.14 -3.86 16 3 C 0.09 3.50 0.37 -10.33 0.00 3.50 16 4 C -0.09 -3.20 2.48 -10.79 -0.03 -3.22 16 5 C -0.13 -4.61 8.70 71.98 0.63 -3.99 16 6 C -0.14 -3.34 8.62 71.98 0.62 -2.72 16 7 C -0.14 -4.91 5.68 31.93 0.18 -4.73 16 8 C -0.14 -5.96 6.54 32.13 0.21 -5.75 16 9 C 0.21 11.14 3.26 30.51 0.10 11.24 16 10 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 11 C -0.56 -32.49 8.81 25.60 0.23 -32.27 16 12 H 0.06 3.35 7.77 -2.91 -0.02 3.32 16 13 C 0.03 1.47 5.42 84.65 0.46 1.93 16 14 N -0.90 -55.72 12.93 21.45 0.28 -55.44 16 15 Si 0.96 45.38 29.54 68.60 2.03 47.41 16 16 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 18 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 19 O -0.37 -19.62 8.60 -148.98 -1.28 -20.90 16 20 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 21 H 0.06 1.90 6.04 -2.39 -0.01 1.88 16 22 H 0.02 1.08 7.68 -2.39 -0.02 1.06 16 23 H 0.05 1.87 6.45 -2.39 -0.02 1.86 16 24 H 0.09 2.43 6.48 -2.39 -0.02 2.41 16 25 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.06 1.91 6.44 -2.39 -0.02 1.90 16 27 H 0.02 1.01 7.74 -2.39 -0.02 1.00 16 28 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.44 6.13 -2.39 -0.01 1.42 16 31 H 0.07 1.46 6.48 -2.39 -0.02 1.45 16 32 H 0.08 2.54 5.71 -2.38 -0.01 2.53 16 33 H 0.10 2.70 5.81 -2.39 -0.01 2.69 16 34 H 0.06 2.47 8.05 -2.39 -0.02 2.45 16 35 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -67.00 274.24 5.27 -61.73 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 1.04 Total: 11.51 kcal Atomic # 6 Polarization: -47.51 SS G_CDS: 3.21 Total: -44.30 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.28 Total: -55.44 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -1.28 Total: -20.90 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -67.00 5.27 -61.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306358338.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.859 kcal (2) G-P(sol) polarization free energy of solvation -67.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds