Wall clock time and date at job start Mon Mar 30 2020 03:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47045 * 2 1 4 4 C 1.53003 * 109.46662 * 119.99577 * 2 1 3 5 5 C 1.53005 * 109.46799 * 174.99658 * 4 2 1 6 6 C 1.52997 * 109.87221 * 305.70486 * 5 4 2 7 7 C 1.54099 * 109.87791 * 184.69164 * 5 4 2 8 8 C 1.54807 * 104.18861 * 238.40073 * 7 5 4 9 9 C 1.54995 * 102.09362 * 339.11880 * 8 7 5 10 10 H 1.09000 * 110.61927 * 278.52664 * 9 8 7 11 11 C 1.50696 * 110.61555 * 155.68211 * 9 8 7 12 12 H 1.08001 * 120.00199 * 0.02562 * 11 9 8 13 13 C 1.37879 * 119.99800 * 180.02562 * 11 9 8 14 14 N 1.31513 * 120.00291 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99868 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46975 * 60.00554 * 15 13 11 17 17 H 1.48501 * 109.47234 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47366 * 300.00385 * 15 13 11 19 19 O 1.43751 * 109.99848 * 66.79228 * 5 4 2 20 20 H 1.09000 * 109.47531 * 300.00517 * 1 2 3 21 21 H 1.09005 * 109.46922 * 60.00049 * 1 2 3 22 22 H 1.09002 * 109.47528 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47121 * 239.99666 * 2 1 3 24 24 H 1.08995 * 109.47434 * 59.99857 * 3 2 1 25 25 H 1.09004 * 109.46807 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.46755 * 299.99300 * 3 2 1 27 27 H 1.09002 * 109.46907 * 55.00357 * 4 2 1 28 28 H 1.08993 * 109.47214 * 295.00146 * 4 2 1 29 29 H 1.09002 * 109.47153 * 299.69107 * 6 5 4 30 30 H 1.09001 * 109.46832 * 179.69298 * 6 5 4 31 31 H 1.09004 * 109.47261 * 59.69279 * 6 5 4 32 32 H 1.09004 * 110.49074 * 357.08204 * 7 5 4 33 33 H 1.08998 * 110.48494 * 119.72104 * 7 5 4 34 34 H 1.08999 * 110.90688 * 97.32272 * 8 7 5 35 35 H 1.09008 * 110.90364 * 220.88842 * 8 7 5 36 36 H 0.96999 * 120.00156 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5648 -0.8311 1.1881 6 6 3.9860 -1.4950 -0.1244 7 6 4.0789 -1.6581 2.3824 8 6 5.0489 -0.7011 3.1171 9 6 5.3983 0.3224 2.0068 10 1 6.1754 -0.0718 1.3521 11 6 5.8303 1.6337 2.6109 12 1 5.8611 1.7497 3.6842 13 6 6.1862 2.6853 1.7933 14 7 6.1482 2.5443 0.4863 15 14 6.7210 4.3110 2.5421 16 1 7.9204 4.0944 3.3905 17 1 7.0492 5.2712 1.4579 18 1 5.6193 4.8595 3.3731 19 8 4.1562 0.4754 1.2869 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.6766 1.9564 0.8899 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9562 -0.8900 27 1 1.6052 -1.7197 1.2952 28 1 1.7515 -0.1582 2.1370 29 1 3.5553 -2.4947 -0.1805 30 1 5.0731 -1.5650 -0.1636 31 1 3.6298 -0.8982 -0.9642 32 1 3.2528 -1.9395 3.0355 33 1 4.6088 -2.5442 2.0329 34 1 4.5523 -0.2119 3.9550 35 1 5.9401 -1.2322 3.4517 36 1 6.3982 3.2842 -0.0888 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306379855.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:21 Heat of formation + Delta-G solvation = -71.786227 kcal Electronic energy + Delta-G solvation = -15337.086652 eV Core-core repulsion = 13013.368091 eV Total energy + Delta-G solvation = -2323.718561 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.89007 -35.40078 -32.64269 -31.10386 -30.26441 -26.64454 -26.41873 -26.07962 -23.14690 -20.24415 -19.81666 -18.56225 -16.54857 -15.16834 -15.05168 -14.42676 -13.86205 -13.58927 -13.20199 -12.71297 -12.59144 -12.04643 -11.82181 -11.65231 -11.57994 -11.27681 -10.96081 -10.86487 -10.77728 -10.57600 -10.39985 -10.17408 -9.96218 -9.82483 -9.47630 -9.30946 -8.97777 -8.52068 -7.92430 -5.98490 -4.09748 3.34111 3.38655 3.41263 4.44802 5.00548 5.25203 5.42186 5.44638 5.58684 5.70750 5.71570 5.93553 6.00627 6.06887 6.16907 6.21249 6.22821 6.28682 6.41555 6.44353 6.59660 6.64311 6.69527 6.75122 6.78130 6.88181 6.94013 7.02737 7.13062 7.57964 7.69057 7.92657 8.33977 8.69745 9.03449 9.60050 11.09216 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.031622 B = 0.010820 C = 0.009156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.236586 B = 2587.149833 C = 3057.444380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.152 4.152 4 C -0.099 4.099 5 C 0.092 3.908 6 C -0.158 4.158 7 C -0.146 4.146 8 C -0.147 4.147 9 C 0.206 3.794 10 H 0.026 0.974 11 C -0.527 4.527 12 H 0.061 0.939 13 C 0.078 3.922 14 N -0.864 5.864 15 Si 0.890 3.110 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 O -0.337 6.337 20 H 0.049 0.951 21 H 0.047 0.953 22 H 0.045 0.955 23 H 0.066 0.934 24 H 0.043 0.957 25 H 0.107 0.893 26 H 0.030 0.970 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.793 -6.412 -0.296 9.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.209 4.209 4 C -0.137 4.137 5 C 0.051 3.949 6 C -0.215 4.215 7 C -0.184 4.184 8 C -0.185 4.185 9 C 0.151 3.849 10 H 0.043 0.957 11 C -0.565 4.565 12 H 0.079 0.921 13 C -0.127 4.127 14 N -0.501 5.501 15 Si 0.717 3.283 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.201 1.201 19 O -0.256 6.256 20 H 0.069 0.931 21 H 0.067 0.933 22 H 0.064 0.936 23 H 0.084 0.916 24 H 0.062 0.938 25 H 0.125 0.875 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.848 -6.129 -0.559 9.208 hybrid contribution 0.296 0.652 0.433 0.837 sum -6.552 -5.477 -0.127 8.541 Atomic orbital electron populations 1.21876 0.96738 1.00520 1.01155 1.21123 0.93904 0.97987 0.98106 1.22036 1.05847 0.93802 0.99178 1.21742 0.94569 0.99080 0.98316 1.21863 0.92655 0.87316 0.93019 1.22275 1.01404 0.98962 0.98859 1.22985 0.99192 0.98583 0.97673 1.23185 0.97540 0.97507 1.00289 1.20635 0.83920 0.93491 0.86828 0.95678 1.20962 1.45335 0.97428 0.92725 0.92118 1.25041 0.94269 0.98626 0.94776 1.70006 1.45702 1.31740 1.02624 0.86718 0.79088 0.83622 0.78872 1.20209 1.21233 1.20126 1.89253 1.36920 1.22293 1.77159 0.93137 0.93345 0.93610 0.91571 0.93785 0.87490 0.95100 0.92680 0.91873 0.93680 0.92758 0.92075 0.92353 0.92287 0.92007 0.92635 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.19 37.16 0.34 -1.68 16 2 C -0.09 -1.55 2.58 -90.62 -0.23 -1.79 16 3 C -0.15 -2.98 8.59 37.16 0.32 -2.66 16 4 C -0.10 -1.72 3.91 -26.73 -0.10 -1.82 16 5 C 0.09 1.82 0.82 -90.04 -0.07 1.75 16 6 C -0.16 -2.87 8.11 37.16 0.30 -2.57 16 7 C -0.15 -2.69 6.27 -25.20 -0.16 -2.85 16 8 C -0.15 -3.13 6.55 -24.73 -0.16 -3.29 16 9 C 0.21 5.31 3.03 -26.83 -0.08 5.23 16 10 H 0.03 0.71 8.13 -51.93 -0.42 0.28 16 11 C -0.53 -14.81 8.82 -34.44 -0.30 -15.12 16 12 H 0.06 1.67 7.77 -52.49 -0.41 1.26 16 13 C 0.08 2.21 5.44 -17.82 -0.10 2.12 16 14 N -0.86 -25.29 13.13 55.43 0.73 -24.56 16 15 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 19 O -0.34 -8.32 7.05 -35.23 -0.25 -8.56 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.07 1.09 6.07 -51.93 -0.32 0.78 16 24 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.11 2.55 5.32 -51.93 -0.28 2.28 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.05 1.05 8.13 -51.93 -0.42 0.63 16 31 H 0.06 1.13 6.25 -51.93 -0.32 0.80 16 32 H 0.06 0.96 7.70 -51.93 -0.40 0.56 16 33 H 0.06 0.99 7.70 -51.93 -0.40 0.59 16 34 H 0.06 1.32 8.04 -51.93 -0.42 0.91 16 35 H 0.05 1.09 8.14 -51.92 -0.42 0.67 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 281.04 15.07 4.24 4.24 Total: -1.00 -28.78 281.04 -6.88 -35.67 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -6.32 Total: -0.53 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: -0.25 Total: -22.69 kcal Atomic # 7 Polarization: -25.29 SS G_CDS: 0.73 Total: -24.56 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.25 Total: -8.56 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.78 -6.88 -35.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306379855.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.119 kcal (2) G-P(sol) polarization free energy of solvation -28.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds