Wall clock time and date at job start Mon Mar 30 2020 03:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47045 * 2 1 4 4 C 1.53003 * 109.46662 * 119.99577 * 2 1 3 5 5 C 1.53005 * 109.46799 * 174.99658 * 4 2 1 6 6 C 1.52997 * 109.87221 * 305.70486 * 5 4 2 7 7 C 1.54099 * 109.87791 * 184.69164 * 5 4 2 8 8 C 1.54807 * 104.18861 * 238.40073 * 7 5 4 9 9 C 1.54995 * 102.09362 * 339.11880 * 8 7 5 10 10 H 1.09000 * 110.61927 * 278.52664 * 9 8 7 11 11 C 1.50696 * 110.61555 * 155.68211 * 9 8 7 12 12 H 1.08001 * 120.00199 * 0.02562 * 11 9 8 13 13 C 1.37879 * 119.99800 * 180.02562 * 11 9 8 14 14 N 1.31513 * 120.00291 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99868 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46975 * 60.00554 * 15 13 11 17 17 H 1.48501 * 109.47234 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47366 * 300.00385 * 15 13 11 19 19 O 1.43751 * 109.99848 * 66.79228 * 5 4 2 20 20 H 1.09000 * 109.47531 * 300.00517 * 1 2 3 21 21 H 1.09005 * 109.46922 * 60.00049 * 1 2 3 22 22 H 1.09002 * 109.47528 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47121 * 239.99666 * 2 1 3 24 24 H 1.08995 * 109.47434 * 59.99857 * 3 2 1 25 25 H 1.09004 * 109.46807 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.46755 * 299.99300 * 3 2 1 27 27 H 1.09002 * 109.46907 * 55.00357 * 4 2 1 28 28 H 1.08993 * 109.47214 * 295.00146 * 4 2 1 29 29 H 1.09002 * 109.47153 * 299.69107 * 6 5 4 30 30 H 1.09001 * 109.46832 * 179.69298 * 6 5 4 31 31 H 1.09004 * 109.47261 * 59.69279 * 6 5 4 32 32 H 1.09004 * 110.49074 * 357.08204 * 7 5 4 33 33 H 1.08998 * 110.48494 * 119.72104 * 7 5 4 34 34 H 1.08999 * 110.90688 * 97.32272 * 8 7 5 35 35 H 1.09008 * 110.90364 * 220.88842 * 8 7 5 36 36 H 0.96999 * 120.00156 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5648 -0.8311 1.1881 6 6 3.9860 -1.4950 -0.1244 7 6 4.0789 -1.6581 2.3824 8 6 5.0489 -0.7011 3.1171 9 6 5.3983 0.3224 2.0068 10 1 6.1754 -0.0718 1.3521 11 6 5.8303 1.6337 2.6109 12 1 5.8611 1.7497 3.6842 13 6 6.1862 2.6853 1.7933 14 7 6.1482 2.5443 0.4863 15 14 6.7210 4.3110 2.5421 16 1 7.9204 4.0944 3.3905 17 1 7.0492 5.2712 1.4579 18 1 5.6193 4.8595 3.3731 19 8 4.1562 0.4754 1.2869 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.6766 1.9564 0.8899 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9562 -0.8900 27 1 1.6052 -1.7197 1.2952 28 1 1.7515 -0.1582 2.1370 29 1 3.5553 -2.4947 -0.1805 30 1 5.0731 -1.5650 -0.1636 31 1 3.6298 -0.8982 -0.9642 32 1 3.2528 -1.9395 3.0355 33 1 4.6088 -2.5442 2.0329 34 1 4.5523 -0.2119 3.9550 35 1 5.9401 -1.2322 3.4517 36 1 6.3982 3.2842 -0.0888 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306379855.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:20 Heat of formation + Delta-G solvation = -87.780339 kcal Electronic energy + Delta-G solvation = -15337.780209 eV Core-core repulsion = 13013.368091 eV Total energy + Delta-G solvation = -2324.412118 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.52413 -36.90120 -34.66865 -32.80600 -31.94774 -28.45511 -27.81337 -27.57701 -24.94463 -22.06532 -21.27235 -20.05436 -18.62571 -16.87172 -16.74804 -16.27554 -15.45303 -15.11598 -14.57293 -14.34147 -14.27348 -13.66235 -13.46018 -13.35485 -12.97805 -12.79734 -12.64783 -12.47053 -12.41584 -12.28634 -12.06862 -11.87921 -11.48039 -11.41076 -11.06660 -10.90027 -10.83084 -10.57061 -9.79248 -8.12852 -6.31498 1.39852 1.42422 1.49646 2.41485 3.08211 3.66637 3.90078 3.98667 4.20311 4.23413 4.30044 4.45651 4.60661 4.62207 4.75939 4.84301 4.86173 4.92484 4.96026 5.03043 5.11360 5.11610 5.15411 5.21406 5.27994 5.39033 5.46325 5.54675 5.61106 5.69795 5.79200 5.97309 6.28480 6.68305 7.08281 7.42658 8.94723 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.031622 B = 0.010820 C = 0.009156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.236586 B = 2587.149833 C = 3057.444380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 C -0.146 4.146 4 C -0.094 4.094 5 C 0.075 3.925 6 C -0.151 4.151 7 C -0.137 4.137 8 C -0.142 4.142 9 C 0.199 3.801 10 H -0.011 1.011 11 C -0.551 4.551 12 H 0.059 0.941 13 C 0.027 3.973 14 N -0.898 5.898 15 Si 0.955 3.045 16 H -0.266 1.266 17 H -0.283 1.283 18 H -0.272 1.272 19 O -0.361 6.361 20 H 0.049 0.951 21 H 0.055 0.945 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.031 0.969 25 H 0.062 0.938 26 H 0.040 0.960 27 H 0.090 0.910 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.031 0.969 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.290 -7.539 0.228 11.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 C -0.203 4.203 4 C -0.132 4.132 5 C 0.035 3.965 6 C -0.209 4.209 7 C -0.175 4.175 8 C -0.180 4.180 9 C 0.144 3.856 10 H 0.007 0.993 11 C -0.589 4.589 12 H 0.078 0.922 13 C -0.175 4.175 14 N -0.535 5.535 15 Si 0.780 3.220 16 H -0.190 1.190 17 H -0.208 1.208 18 H -0.198 1.198 19 O -0.281 6.281 20 H 0.068 0.932 21 H 0.075 0.925 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.050 0.950 25 H 0.081 0.919 26 H 0.059 0.941 27 H 0.109 0.891 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.348 -7.269 -0.025 11.069 hybrid contribution 0.756 0.970 0.239 1.253 sum -7.592 -6.298 0.214 9.867 Atomic orbital electron populations 1.21800 0.94002 1.02224 1.01569 1.21104 0.96123 0.95527 0.98134 1.21919 1.02849 0.96492 0.99057 1.21737 0.92603 1.00899 0.97933 1.22275 0.94256 0.85691 0.94277 1.22219 1.00132 1.00694 0.97837 1.22972 0.99360 0.98124 0.97014 1.23067 0.98869 0.97153 0.98909 1.20452 0.83915 0.93599 0.87664 0.99332 1.21377 1.45715 0.98874 0.92896 0.92232 1.25856 0.94332 1.02178 0.95161 1.70144 1.46802 1.32660 1.03893 0.85680 0.78947 0.79225 0.78159 1.19038 1.20809 1.19754 1.89224 1.36169 1.25452 1.77270 0.93223 0.92543 0.91228 0.91173 0.94986 0.91898 0.94091 0.89136 0.93069 0.89955 0.94944 0.92959 0.89701 0.90437 0.92449 0.91508 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.19 71.98 0.66 -2.74 16 2 C -0.09 -2.86 2.58 -10.79 -0.03 -2.89 16 3 C -0.15 -5.78 8.59 71.98 0.62 -5.16 16 4 C -0.09 -3.02 3.91 30.60 0.12 -2.90 16 5 C 0.08 2.87 0.82 -10.42 -0.01 2.87 16 6 C -0.15 -5.34 8.11 71.98 0.58 -4.76 16 7 C -0.14 -4.72 6.27 31.58 0.20 -4.52 16 8 C -0.14 -5.98 6.55 31.89 0.21 -5.77 16 9 C 0.20 10.57 3.03 30.53 0.09 10.66 16 10 H -0.01 -0.64 8.13 -2.39 -0.02 -0.66 16 11 C -0.55 -31.86 8.82 25.60 0.23 -31.63 16 12 H 0.06 3.34 7.77 -2.91 -0.02 3.32 16 13 C 0.03 1.56 5.44 84.66 0.46 2.02 16 14 N -0.90 -54.47 13.13 21.45 0.28 -54.19 16 15 Si 0.96 44.86 29.54 68.60 2.03 46.89 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 17 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 19 O -0.36 -18.29 7.05 -148.98 -1.05 -19.34 16 20 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 21 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 22 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.07 2.17 6.07 -2.39 -0.01 2.15 16 24 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.06 3.11 5.32 -2.38 -0.01 3.10 16 26 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.03 1.25 8.13 -2.39 -0.02 1.23 16 31 H 0.05 1.91 6.25 -2.38 -0.01 1.89 16 32 H 0.08 2.48 7.70 -2.39 -0.02 2.46 16 33 H 0.08 2.38 7.70 -2.39 -0.02 2.36 16 34 H 0.06 2.43 8.04 -2.39 -0.02 2.41 16 35 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 36 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -64.30 281.04 5.41 -58.89 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 1.02 Total: 12.59 kcal Atomic # 6 Polarization: -47.97 SS G_CDS: 3.13 Total: -44.83 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.28 Total: -54.19 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -1.05 Total: -19.34 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -64.30 5.41 -58.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306379855.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.887 kcal (2) G-P(sol) polarization free energy of solvation -64.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds