Wall clock time and date at job start Mon Mar 30 2020 03:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46907 * 2 1 4 4 C 1.53006 * 109.46997 * 119.99698 * 2 1 3 5 5 C 1.52998 * 110.35400 * 307.14565 * 4 2 1 6 6 C 1.54947 * 110.30761 * 185.00172 * 4 2 1 7 7 C 1.55306 * 100.94113 * 204.64174 * 6 4 2 8 8 C 1.54385 * 102.24929 * 34.13328 * 7 6 4 9 9 C 1.53001 * 109.82774 * 98.15870 * 8 7 6 10 10 C 1.50701 * 109.82681 * 219.12847 * 8 7 6 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 8 7 12 12 C 1.37877 * 120.00063 * 180.02562 * 10 8 7 13 13 N 1.31511 * 119.99887 * 359.97438 * 12 10 8 14 14 Si 1.86799 * 120.00277 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47219 * 89.99716 * 14 12 10 16 16 H 1.48500 * 109.47411 * 209.99701 * 14 12 10 17 17 H 1.48499 * 109.46971 * 329.99860 * 14 12 10 18 18 O 1.43232 * 107.59039 * 338.64388 * 8 7 6 19 19 H 1.09005 * 109.47566 * 300.00163 * 1 2 3 20 20 H 1.09001 * 109.47340 * 60.00089 * 1 2 3 21 21 H 1.09007 * 109.47174 * 180.02562 * 1 2 3 22 22 H 1.08989 * 109.47238 * 239.99972 * 2 1 3 23 23 H 1.09005 * 109.47140 * 59.99576 * 3 2 1 24 24 H 1.08997 * 109.47035 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47048 * 300.00090 * 3 2 1 26 26 H 1.09000 * 109.47208 * 298.56178 * 5 4 2 27 27 H 1.08999 * 109.47039 * 58.55732 * 5 4 2 28 28 H 1.08996 * 109.47150 * 178.55428 * 5 4 2 29 29 H 1.09001 * 111.12286 * 322.56303 * 6 4 2 30 30 H 1.08997 * 111.12489 * 86.72035 * 6 4 2 31 31 H 1.08994 * 110.84946 * 152.32256 * 7 6 4 32 32 H 1.09003 * 110.84317 * 275.74317 * 7 6 4 33 33 H 1.08998 * 109.46936 * 59.99868 * 9 8 7 34 34 H 1.08998 * 109.46872 * 179.97438 * 9 8 7 35 35 H 1.08996 * 109.47264 * 299.99645 * 9 8 7 36 36 H 0.97001 * 120.00263 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.4007 -0.1262 2.5055 6 6 3.5841 -0.6237 1.3339 7 6 3.9116 -1.8733 2.1960 8 6 2.8320 -2.8782 1.7397 9 6 3.4177 -3.8304 0.6951 10 6 2.3303 -3.6626 2.9246 11 1 2.7332 -3.4719 3.9083 12 6 1.3569 -4.6239 2.7529 13 7 0.8659 -4.8559 1.5551 14 14 0.7345 -5.5958 4.2217 15 1 -0.4215 -4.8887 4.8293 16 1 0.3099 -6.9475 3.7770 17 1 1.8203 -5.7237 5.2266 18 8 1.7570 -2.1269 1.1639 19 1 -0.3634 0.5139 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8899 23 1 1.6765 1.9564 0.8900 24 1 3.1299 1.4426 0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6764 0.9250 2.5904 27 1 0.3163 -0.2130 2.4373 28 1 1.7539 -0.6666 3.3838 29 1 4.0371 -0.6987 0.3453 30 1 3.8929 0.2926 1.8370 31 1 4.9101 -2.2484 1.9720 32 1 3.8127 -1.6486 3.2580 33 1 4.2560 -4.3750 1.1294 34 1 2.6511 -4.5372 0.3774 35 1 3.7632 -3.2576 -0.1655 36 1 0.1809 -5.5319 1.4343 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306388727.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:03 Heat of formation + Delta-G solvation = -63.905432 kcal Electronic energy + Delta-G solvation = -15606.146933 eV Core-core repulsion = 13282.770108 eV Total energy + Delta-G solvation = -2323.376824 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.06169 -35.15265 -32.41718 -30.98222 -29.62060 -27.36324 -26.48553 -25.25506 -23.65249 -21.31165 -19.28978 -18.05936 -16.36567 -15.28272 -14.81865 -14.48814 -13.68949 -13.42377 -12.69317 -12.57368 -12.34524 -12.13408 -11.86095 -11.47865 -11.23166 -11.15319 -11.02009 -10.86364 -10.64355 -10.53235 -10.42490 -10.25755 -10.08352 -9.89878 -9.47183 -9.24751 -8.95619 -8.39945 -7.73246 -5.86941 -4.02702 3.33833 3.40621 3.43025 4.47913 4.91634 5.34319 5.41714 5.45692 5.69068 5.76529 5.82622 5.94793 6.07226 6.14818 6.18650 6.28992 6.30859 6.43817 6.46682 6.52521 6.62611 6.72138 6.77085 6.85788 6.92123 6.97106 7.02144 7.19897 7.25115 7.53946 7.86466 8.19116 8.46675 8.76991 9.17371 9.68016 11.14583 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.037679 B = 0.011078 C = 0.010330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.942947 B = 2527.031546 C = 2709.863016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 C -0.144 4.144 4 C 0.108 3.892 5 C -0.154 4.154 6 C -0.146 4.146 7 C -0.141 4.141 8 C 0.229 3.771 9 C -0.138 4.138 10 C -0.530 4.530 11 H 0.055 0.945 12 C 0.081 3.919 13 N -0.860 5.860 14 Si 0.884 3.116 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.275 1.275 18 O -0.342 6.342 19 H 0.051 0.949 20 H 0.040 0.960 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.033 0.967 34 H 0.089 0.911 35 H 0.010 0.990 36 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.241 8.738 -1.766 9.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.104 4.104 3 C -0.202 4.202 4 C 0.067 3.933 5 C -0.212 4.212 6 C -0.183 4.183 7 C -0.179 4.179 8 C 0.192 3.808 9 C -0.196 4.196 10 C -0.568 4.568 11 H 0.074 0.926 12 C -0.123 4.123 13 N -0.497 5.497 14 Si 0.712 3.288 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.200 1.200 18 O -0.261 6.261 19 H 0.070 0.930 20 H 0.059 0.941 21 H 0.085 0.915 22 H 0.086 0.914 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.108 0.892 35 H 0.029 0.971 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.932 8.521 -1.960 8.954 hybrid contribution -0.172 -0.460 0.941 1.062 sum 1.759 8.061 -1.018 8.313 Atomic orbital electron populations 1.21808 0.95368 1.02595 1.00110 1.21138 0.96143 0.94832 0.98308 1.21883 1.00797 0.96401 1.01077 1.21984 0.92042 0.86454 0.92802 1.22187 1.01330 0.98682 0.98964 1.23242 0.96966 0.98334 0.99805 1.23207 0.99887 0.95623 0.99154 1.19582 0.82653 0.87585 0.90979 1.21971 1.00193 1.00620 0.96818 1.21272 1.22858 1.19226 0.93413 0.92635 1.24974 0.95844 0.96254 0.95277 1.69954 1.26983 1.31979 1.20811 0.86753 0.79255 0.79449 0.83387 1.20684 1.21253 1.19993 1.88738 1.44467 1.11638 1.81271 0.92965 0.94108 0.91497 0.91355 0.92783 0.92850 0.93302 0.93779 0.92410 0.92070 0.91924 0.92168 0.92590 0.91974 0.94802 0.89205 0.97089 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.59 37.16 0.32 -2.08 16 2 C -0.09 -1.49 2.52 -90.61 -0.23 -1.72 16 3 C -0.14 -2.01 8.70 37.16 0.32 -1.68 16 4 C 0.11 2.17 0.59 -89.59 -0.05 2.12 16 5 C -0.15 -2.94 8.09 37.16 0.30 -2.64 16 6 C -0.15 -2.71 4.66 -24.48 -0.11 -2.82 16 7 C -0.14 -3.00 5.68 -24.78 -0.14 -3.14 16 8 C 0.23 5.79 0.81 -91.04 -0.07 5.72 16 9 C -0.14 -3.45 8.51 37.16 0.32 -3.13 16 10 C -0.53 -14.69 8.23 -34.44 -0.28 -14.97 16 11 H 0.06 1.53 7.52 -52.49 -0.39 1.13 16 12 C 0.08 2.28 5.26 -17.82 -0.09 2.18 16 13 N -0.86 -24.95 10.92 55.43 0.61 -24.34 16 14 Si 0.88 21.47 29.54 -169.99 -5.02 16.45 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 O -0.34 -8.69 9.33 -35.23 -0.33 -9.02 16 19 H 0.05 0.84 6.37 -51.93 -0.33 0.51 16 20 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.07 1.32 7.99 -51.92 -0.42 0.90 16 22 H 0.07 1.25 8.14 -51.94 -0.42 0.83 16 23 H 0.05 0.72 6.74 -51.93 -0.35 0.37 16 24 H 0.05 0.71 7.05 -51.93 -0.37 0.34 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.04 0.70 6.79 -51.93 -0.35 0.35 16 27 H 0.06 1.11 6.33 -51.93 -0.33 0.78 16 28 H 0.06 1.27 7.51 -51.93 -0.39 0.88 16 29 H 0.06 1.12 8.05 -51.93 -0.42 0.70 16 30 H 0.06 0.98 7.95 -51.93 -0.41 0.56 16 31 H 0.06 1.11 7.82 -51.93 -0.41 0.71 16 32 H 0.06 1.32 7.34 -51.93 -0.38 0.94 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 2.48 6.01 -51.93 -0.31 2.17 16 35 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 275.25 15.07 4.15 4.15 Total: -1.00 -29.09 275.25 -6.43 -35.53 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -6.11 Total: -0.59 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: 0.27 Total: -22.16 kcal Atomic # 7 Polarization: -24.95 SS G_CDS: 0.61 Total: -24.34 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -0.33 Total: -9.02 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.09 -6.43 -35.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306388727.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.380 kcal (2) G-P(sol) polarization free energy of solvation -29.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds