Wall clock time and date at job start Mon Mar 30 2020 03:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46907 * 2 1 4 4 C 1.53006 * 109.46997 * 119.99698 * 2 1 3 5 5 C 1.52998 * 110.35400 * 307.14565 * 4 2 1 6 6 C 1.54947 * 110.30761 * 185.00172 * 4 2 1 7 7 C 1.55306 * 100.94113 * 204.64174 * 6 4 2 8 8 C 1.54385 * 102.24929 * 34.13328 * 7 6 4 9 9 C 1.53001 * 109.82774 * 98.15870 * 8 7 6 10 10 C 1.50701 * 109.82681 * 219.12847 * 8 7 6 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 8 7 12 12 C 1.37877 * 120.00063 * 180.02562 * 10 8 7 13 13 N 1.31511 * 119.99887 * 359.97438 * 12 10 8 14 14 Si 1.86799 * 120.00277 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47219 * 89.99716 * 14 12 10 16 16 H 1.48500 * 109.47411 * 209.99701 * 14 12 10 17 17 H 1.48499 * 109.46971 * 329.99860 * 14 12 10 18 18 O 1.43232 * 107.59039 * 338.64388 * 8 7 6 19 19 H 1.09005 * 109.47566 * 300.00163 * 1 2 3 20 20 H 1.09001 * 109.47340 * 60.00089 * 1 2 3 21 21 H 1.09007 * 109.47174 * 180.02562 * 1 2 3 22 22 H 1.08989 * 109.47238 * 239.99972 * 2 1 3 23 23 H 1.09005 * 109.47140 * 59.99576 * 3 2 1 24 24 H 1.08997 * 109.47035 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47048 * 300.00090 * 3 2 1 26 26 H 1.09000 * 109.47208 * 298.56178 * 5 4 2 27 27 H 1.08999 * 109.47039 * 58.55732 * 5 4 2 28 28 H 1.08996 * 109.47150 * 178.55428 * 5 4 2 29 29 H 1.09001 * 111.12286 * 322.56303 * 6 4 2 30 30 H 1.08997 * 111.12489 * 86.72035 * 6 4 2 31 31 H 1.08994 * 110.84946 * 152.32256 * 7 6 4 32 32 H 1.09003 * 110.84317 * 275.74317 * 7 6 4 33 33 H 1.08998 * 109.46936 * 59.99868 * 9 8 7 34 34 H 1.08998 * 109.46872 * 179.97438 * 9 8 7 35 35 H 1.08996 * 109.47264 * 299.99645 * 9 8 7 36 36 H 0.97001 * 120.00263 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.4007 -0.1262 2.5055 6 6 3.5841 -0.6237 1.3339 7 6 3.9116 -1.8733 2.1960 8 6 2.8320 -2.8782 1.7397 9 6 3.4177 -3.8304 0.6951 10 6 2.3303 -3.6626 2.9246 11 1 2.7332 -3.4719 3.9083 12 6 1.3569 -4.6239 2.7529 13 7 0.8659 -4.8559 1.5551 14 14 0.7345 -5.5958 4.2217 15 1 -0.4215 -4.8887 4.8293 16 1 0.3099 -6.9475 3.7770 17 1 1.8203 -5.7237 5.2266 18 8 1.7570 -2.1269 1.1639 19 1 -0.3634 0.5139 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8899 23 1 1.6765 1.9564 0.8900 24 1 3.1299 1.4426 0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6764 0.9250 2.5904 27 1 0.3163 -0.2130 2.4373 28 1 1.7539 -0.6666 3.3838 29 1 4.0371 -0.6987 0.3453 30 1 3.8929 0.2926 1.8370 31 1 4.9101 -2.2484 1.9720 32 1 3.8127 -1.6486 3.2580 33 1 4.2560 -4.3750 1.1294 34 1 2.6511 -4.5372 0.3774 35 1 3.7632 -3.2576 -0.1655 36 1 0.1809 -5.5319 1.4343 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306388727.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:03 Heat of formation + Delta-G solvation = -80.525791 kcal Electronic energy + Delta-G solvation = -15606.867645 eV Core-core repulsion = 13282.770108 eV Total energy + Delta-G solvation = -2324.097537 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.71106 -36.74573 -34.38679 -32.73452 -31.32496 -28.91958 -27.82740 -27.31550 -25.28623 -22.82594 -21.15400 -19.58580 -18.37518 -16.87504 -16.50023 -16.35279 -15.33064 -15.02649 -14.25395 -14.01767 -13.98126 -13.84544 -13.44999 -13.03734 -12.89272 -12.83035 -12.73650 -12.60996 -12.32368 -12.15774 -12.13082 -11.89790 -11.74891 -11.55768 -11.03827 -10.88872 -10.78793 -10.50667 -9.60354 -7.97649 -6.20007 1.39516 1.40753 1.49805 2.44554 3.13860 3.56699 3.94073 3.98794 4.23310 4.33174 4.46836 4.50119 4.70915 4.72616 4.79178 4.85892 4.91016 4.99913 5.02351 5.07107 5.11352 5.13742 5.18766 5.25483 5.29440 5.36824 5.46610 5.57183 5.63809 5.76180 5.78806 6.17377 6.40550 6.75375 7.28207 7.56361 9.02246 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.037679 B = 0.011078 C = 0.010330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.942947 B = 2527.031546 C = 2709.863016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.084 4.084 3 C -0.136 4.136 4 C 0.092 3.908 5 C -0.148 4.148 6 C -0.133 4.133 7 C -0.138 4.138 8 C 0.216 3.784 9 C -0.132 4.132 10 C -0.546 4.546 11 H 0.049 0.951 12 C 0.033 3.967 13 N -0.889 5.889 14 Si 0.943 3.057 15 H -0.281 1.281 16 H -0.283 1.283 17 H -0.267 1.267 18 O -0.377 6.377 19 H 0.060 0.940 20 H 0.066 0.934 21 H 0.026 0.974 22 H 0.053 0.947 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.046 0.954 28 H 0.036 0.964 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.037 0.963 34 H 0.057 0.943 35 H 0.025 0.975 36 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.931 10.707 -1.556 11.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.103 4.103 3 C -0.194 4.194 4 C 0.052 3.948 5 C -0.206 4.206 6 C -0.170 4.170 7 C -0.176 4.176 8 C 0.178 3.822 9 C -0.189 4.189 10 C -0.584 4.584 11 H 0.067 0.933 12 C -0.169 4.169 13 N -0.527 5.527 14 Si 0.769 3.231 15 H -0.207 1.207 16 H -0.209 1.209 17 H -0.192 1.192 18 O -0.297 6.297 19 H 0.079 0.921 20 H 0.084 0.916 21 H 0.045 0.955 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.099 0.901 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.044 0.956 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.631 10.499 -1.744 10.963 hybrid contribution -0.392 -1.047 0.857 1.409 sum 2.238 9.452 -0.887 9.754 Atomic orbital electron populations 1.21761 0.95462 1.00462 1.01786 1.21142 0.96124 0.96850 0.96197 1.21826 1.01395 0.93545 1.02586 1.22383 0.93562 0.84294 0.94536 1.22132 1.00506 1.00483 0.97449 1.23204 0.95569 0.98273 0.99984 1.23105 0.99124 0.96047 0.99337 1.19639 0.83805 0.88569 0.90199 1.21860 0.99292 1.00254 0.97543 1.21643 1.22843 1.19745 0.94141 0.93256 1.25682 0.96256 0.97374 0.97599 1.70105 1.27489 1.32586 1.22515 0.85822 0.78675 0.78114 0.80522 1.20686 1.20871 1.19186 1.88669 1.45077 1.14660 1.81322 0.92144 0.91552 0.95490 0.92833 0.91780 0.91858 0.91345 0.90105 0.93480 0.94441 0.91101 0.89013 0.91422 0.92441 0.94357 0.92375 0.95600 0.93541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 8.59 71.98 0.62 -3.89 16 2 C -0.08 -2.77 2.52 -10.79 -0.03 -2.80 16 3 C -0.14 -3.22 8.70 71.98 0.63 -2.60 16 4 C 0.09 3.57 0.59 -10.13 -0.01 3.57 16 5 C -0.15 -5.41 8.09 71.98 0.58 -4.83 16 6 C -0.13 -4.57 4.66 32.05 0.15 -4.42 16 7 C -0.14 -5.70 5.68 31.86 0.18 -5.52 16 8 C 0.22 10.94 0.81 -11.07 -0.01 10.93 16 9 C -0.13 -6.63 8.51 71.98 0.61 -6.02 16 10 C -0.55 -30.69 8.23 25.60 0.21 -30.48 16 11 H 0.05 2.74 7.52 -2.91 -0.02 2.72 16 12 C 0.03 1.86 5.26 84.66 0.45 2.30 16 13 N -0.89 -53.03 10.92 21.45 0.23 -52.80 16 14 Si 0.94 44.75 29.54 68.60 2.03 46.78 16 15 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 16 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 18 O -0.38 -19.40 9.33 -148.98 -1.39 -20.79 16 19 H 0.06 1.85 6.37 -2.38 -0.02 1.83 16 20 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 21 H 0.03 1.07 7.99 -2.38 -0.02 1.05 16 22 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.06 1.40 6.74 -2.38 -0.02 1.38 16 24 H 0.06 1.39 7.05 -2.39 -0.02 1.37 16 25 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.08 2.30 6.79 -2.39 -0.02 2.28 16 27 H 0.05 1.78 6.33 -2.39 -0.02 1.76 16 28 H 0.04 1.51 7.51 -2.39 -0.02 1.50 16 29 H 0.07 2.32 8.05 -2.39 -0.02 2.30 16 30 H 0.09 2.58 7.95 -2.39 -0.02 2.56 16 31 H 0.07 2.57 7.82 -2.39 -0.02 2.56 16 32 H 0.06 2.38 7.34 -2.39 -0.02 2.36 16 33 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.06 3.29 6.01 -2.39 -0.01 3.28 16 35 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -63.62 275.25 5.28 -58.34 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 1.03 Total: 12.22 kcal Atomic # 6 Polarization: -47.13 SS G_CDS: 3.38 Total: -43.75 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.23 Total: -52.80 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -1.39 Total: -20.79 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -63.62 5.28 -58.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306388727.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.188 kcal (2) G-P(sol) polarization free energy of solvation -63.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds