Wall clock time and date at job start Mon Mar 30 2020 03:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46927 * 2 1 4 4 C 1.52999 * 109.47139 * 119.99357 * 2 1 3 5 5 C 1.53005 * 109.47201 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47090 * 300.00325 * 5 4 2 7 7 C 1.53002 * 109.46736 * 179.97438 * 6 5 4 8 8 H 1.08993 * 109.47411 * 300.00171 * 7 6 5 9 9 O 1.42905 * 109.46777 * 60.00436 * 7 6 5 10 10 C 1.50706 * 109.47153 * 179.97438 * 7 6 5 11 11 H 1.07998 * 119.99503 * 0.02562 * 10 7 6 12 12 C 1.37871 * 120.00434 * 180.02562 * 10 7 6 13 13 N 1.31516 * 119.99826 * 359.72891 * 12 10 7 14 14 Si 1.86800 * 120.00406 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.47364 * 179.72558 * 14 12 10 16 16 H 1.48508 * 109.46883 * 299.72681 * 14 12 10 17 17 H 1.48497 * 109.46870 * 59.72491 * 14 12 10 18 18 C 1.53002 * 109.47326 * 60.00318 * 6 5 4 19 19 C 1.52996 * 109.47584 * 239.99715 * 2 1 3 20 20 H 1.08992 * 109.47493 * 300.00195 * 1 2 3 21 21 H 1.08999 * 109.47180 * 60.00874 * 1 2 3 22 22 H 1.09010 * 109.46901 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47049 * 180.02562 * 3 2 1 24 24 H 1.08999 * 109.46477 * 299.99556 * 3 2 1 25 25 H 1.08992 * 109.47193 * 59.99622 * 3 2 1 26 26 H 1.09001 * 109.47163 * 60.00480 * 4 2 1 27 27 H 1.09002 * 109.47295 * 300.00562 * 4 2 1 28 28 H 1.09007 * 109.47086 * 180.02562 * 5 4 2 29 29 H 1.09001 * 109.46760 * 60.00123 * 5 4 2 30 30 H 1.08993 * 109.47310 * 299.99833 * 6 5 4 31 31 H 0.96692 * 114.00390 * 59.99929 * 9 7 6 32 32 H 0.97000 * 120.00236 * 0.27947 * 13 12 10 33 33 H 1.08997 * 109.47072 * 59.99072 * 18 6 5 34 34 H 1.08992 * 109.47521 * 180.02562 * 18 6 5 35 35 H 1.08993 * 109.47124 * 299.99951 * 19 2 1 36 36 H 1.09007 * 109.47194 * 59.99792 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5700 -0.7206 1.2496 6 6 4.0805 -1.4415 0.0005 7 6 5.6105 -1.4403 0.0006 8 1 5.9731 -0.4125 0.0006 9 8 6.0872 -2.1137 1.1674 10 6 6.1135 -2.1510 -1.2295 11 1 5.4120 -2.5619 -1.9404 12 6 7.4691 -2.2766 -1.4474 13 7 8.3233 -1.7715 -0.5844 14 14 8.0925 -3.1568 -2.9725 15 1 9.5775 -3.1506 -2.9754 16 1 7.6034 -4.5590 -2.9694 17 1 7.5922 -2.4607 -4.1850 18 6 3.5706 -0.7203 -1.2489 19 6 2.0401 -0.7213 -1.2491 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0278 -0.0005 23 1 3.1300 1.4426 -0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9564 0.8899 26 1 1.6767 -1.7488 1.2494 27 1 1.6766 -0.2072 2.1393 28 1 3.9333 -1.2347 2.1395 29 1 3.9329 0.3073 1.2498 30 1 3.7176 -2.4692 0.0003 31 1 5.8026 -3.0354 1.2336 32 1 7.9997 -1.3141 0.2075 33 1 3.9335 0.3075 -1.2486 34 1 3.9339 -1.2341 -2.1388 35 1 1.6768 -1.7489 -1.2491 36 1 1.6767 -0.2075 -2.1392 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306419403.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:29 Heat of formation + Delta-G solvation = -97.524202 kcal Electronic energy + Delta-G solvation = -15139.329137 eV Core-core repulsion = 12814.494493 eV Total energy + Delta-G solvation = -2324.834643 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.27876 -36.04278 -32.49108 -32.07865 -30.30350 -27.42235 -27.15207 -24.69651 -22.19812 -21.96109 -19.86407 -18.07361 -17.09117 -15.33663 -14.77772 -14.50778 -13.92461 -13.69295 -13.46902 -13.22081 -12.91554 -12.17874 -12.00743 -11.90117 -11.77424 -11.46442 -11.38085 -10.87356 -10.76727 -10.49306 -10.44118 -10.21828 -10.07691 -9.91091 -9.60254 -9.45848 -8.88943 -8.40240 -7.86906 -6.27785 -4.09978 3.44319 3.45471 3.64640 4.55515 4.94800 4.97547 5.06751 5.39466 5.51980 5.61096 5.71224 5.77374 5.84286 5.88118 5.93572 6.00154 6.03037 6.03562 6.17810 6.26229 6.33183 6.38038 6.46365 6.52301 6.66957 6.67884 6.82705 6.93949 7.08113 7.15013 7.64077 8.11915 8.43711 8.93378 9.19327 9.75147 11.11428 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.046828 B = 0.008426 C = 0.007721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.787074 B = 3322.403170 C = 3625.570853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.066 4.066 3 C -0.143 4.143 4 C -0.105 4.105 5 C -0.113 4.113 6 C -0.100 4.100 7 C 0.215 3.785 8 H 0.045 0.955 9 O -0.584 6.584 10 C -0.642 4.642 11 H 0.050 0.950 12 C 0.031 3.969 13 N -0.896 5.896 14 Si 1.063 2.937 15 H -0.283 1.283 16 H -0.289 1.289 17 H -0.289 1.289 18 C -0.103 4.103 19 C -0.107 4.107 20 H 0.049 0.951 21 H 0.050 0.950 22 H 0.051 0.949 23 H 0.066 0.934 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.352 0.648 32 H 0.283 0.717 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.057 2.717 0.713 13.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.066 4.066 3 C -0.200 4.200 4 C -0.142 4.142 5 C -0.150 4.150 6 C -0.119 4.119 7 C 0.158 3.842 8 H 0.063 0.937 9 O -0.388 6.388 10 C -0.680 4.680 11 H 0.068 0.932 12 C -0.177 4.177 13 N -0.531 5.531 14 Si 0.892 3.108 15 H -0.208 1.208 16 H -0.215 1.215 17 H -0.215 1.215 18 C -0.141 4.141 19 C -0.145 4.145 20 H 0.069 0.931 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.085 0.915 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.196 0.804 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.409 2.875 0.038 11.766 hybrid contribution -1.756 -0.084 0.579 1.851 sum -13.165 2.791 0.617 13.472 Atomic orbital electron populations 1.21869 0.95488 1.01247 1.01070 1.20535 0.94282 0.95653 0.96087 1.21957 1.02166 0.95262 1.00653 1.21587 0.96832 0.99576 0.96240 1.21594 0.93674 1.00651 0.99095 1.21693 0.99003 0.98001 0.93158 1.19574 0.87186 0.93242 0.84148 0.93744 1.86457 1.78190 1.27098 1.47092 1.22487 0.94497 1.42300 1.08693 0.93179 1.25753 0.93494 0.96179 1.02250 1.70632 1.37746 1.32635 1.12130 0.83652 0.76239 0.75963 0.74952 1.20836 1.21533 1.21532 1.21471 0.92885 1.00559 0.99160 1.21643 0.97227 0.99507 0.96097 0.93145 0.93074 0.93018 0.91536 0.93277 0.93391 0.92628 0.93017 0.92180 0.92550 0.92727 0.80369 0.90509 0.92602 0.91094 0.92643 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.47 37.16 0.31 -1.31 16 2 C -0.07 -0.91 0.77 -154.51 -0.12 -1.02 16 3 C -0.14 -1.94 7.78 37.16 0.29 -1.65 16 4 C -0.10 -1.54 4.73 -26.73 -0.13 -1.67 16 5 C -0.11 -2.00 4.78 -26.73 -0.13 -2.13 16 6 C -0.10 -2.02 1.92 -90.62 -0.17 -2.19 16 7 C 0.22 5.40 2.01 -27.88 -0.06 5.34 16 8 H 0.04 1.23 8.00 -51.93 -0.42 0.81 16 9 O -0.58 -14.80 11.35 -35.23 -0.40 -15.20 16 10 C -0.64 -17.72 8.03 -34.44 -0.28 -17.99 16 11 H 0.05 1.36 6.71 -52.49 -0.35 1.01 16 12 C 0.03 0.90 5.40 -17.82 -0.10 0.81 16 13 N -0.90 -27.67 13.53 55.43 0.75 -26.92 16 14 Si 1.06 25.23 29.90 -169.99 -5.08 20.15 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 16 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 18 C -0.10 -1.94 4.68 -26.70 -0.12 -2.06 16 19 C -0.11 -1.64 4.74 -26.70 -0.13 -1.77 16 20 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 23 H 0.07 1.01 4.81 -51.93 -0.25 0.76 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.10 7.68 -51.93 -0.40 0.70 16 29 H 0.06 1.02 6.43 -51.93 -0.33 0.69 16 30 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.35 8.04 9.04 45.56 0.41 8.45 16 32 H 0.28 8.91 6.47 -40.82 -0.26 8.64 16 33 H 0.06 1.06 6.43 -51.93 -0.33 0.73 16 34 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 273.02 15.07 4.11 4.11 Total: -1.00 -29.83 273.02 -6.55 -36.37 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -5.30 Total: 7.12 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: -0.62 Total: -25.63 kcal Atomic # 7 Polarization: -27.67 SS G_CDS: 0.75 Total: -26.92 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.40 Total: -15.20 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.08 Total: 20.15 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.83 -6.55 -36.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306419403.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.154 kcal (2) G-P(sol) polarization free energy of solvation -29.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds