Wall clock time and date at job start Mon Mar 30 2020 03:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46927 * 2 1 4 4 C 1.52999 * 109.47139 * 119.99357 * 2 1 3 5 5 C 1.53005 * 109.47201 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47090 * 300.00325 * 5 4 2 7 7 C 1.53002 * 109.46736 * 179.97438 * 6 5 4 8 8 H 1.08993 * 109.47411 * 300.00171 * 7 6 5 9 9 O 1.42905 * 109.46777 * 60.00436 * 7 6 5 10 10 C 1.50706 * 109.47153 * 179.97438 * 7 6 5 11 11 H 1.07998 * 119.99503 * 0.02562 * 10 7 6 12 12 C 1.37871 * 120.00434 * 180.02562 * 10 7 6 13 13 N 1.31516 * 119.99826 * 359.72891 * 12 10 7 14 14 Si 1.86800 * 120.00406 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.47364 * 179.72558 * 14 12 10 16 16 H 1.48508 * 109.46883 * 299.72681 * 14 12 10 17 17 H 1.48497 * 109.46870 * 59.72491 * 14 12 10 18 18 C 1.53002 * 109.47326 * 60.00318 * 6 5 4 19 19 C 1.52996 * 109.47584 * 239.99715 * 2 1 3 20 20 H 1.08992 * 109.47493 * 300.00195 * 1 2 3 21 21 H 1.08999 * 109.47180 * 60.00874 * 1 2 3 22 22 H 1.09010 * 109.46901 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47049 * 180.02562 * 3 2 1 24 24 H 1.08999 * 109.46477 * 299.99556 * 3 2 1 25 25 H 1.08992 * 109.47193 * 59.99622 * 3 2 1 26 26 H 1.09001 * 109.47163 * 60.00480 * 4 2 1 27 27 H 1.09002 * 109.47295 * 300.00562 * 4 2 1 28 28 H 1.09007 * 109.47086 * 180.02562 * 5 4 2 29 29 H 1.09001 * 109.46760 * 60.00123 * 5 4 2 30 30 H 1.08993 * 109.47310 * 299.99833 * 6 5 4 31 31 H 0.96692 * 114.00390 * 59.99929 * 9 7 6 32 32 H 0.97000 * 120.00236 * 0.27947 * 13 12 10 33 33 H 1.08997 * 109.47072 * 59.99072 * 18 6 5 34 34 H 1.08992 * 109.47521 * 180.02562 * 18 6 5 35 35 H 1.08993 * 109.47124 * 299.99951 * 19 2 1 36 36 H 1.09007 * 109.47194 * 59.99792 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5700 -0.7206 1.2496 6 6 4.0805 -1.4415 0.0005 7 6 5.6105 -1.4403 0.0006 8 1 5.9731 -0.4125 0.0006 9 8 6.0872 -2.1137 1.1674 10 6 6.1135 -2.1510 -1.2295 11 1 5.4120 -2.5619 -1.9404 12 6 7.4691 -2.2766 -1.4474 13 7 8.3233 -1.7715 -0.5844 14 14 8.0925 -3.1568 -2.9725 15 1 9.5775 -3.1506 -2.9754 16 1 7.6034 -4.5590 -2.9694 17 1 7.5922 -2.4607 -4.1850 18 6 3.5706 -0.7203 -1.2489 19 6 2.0401 -0.7213 -1.2491 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0278 -0.0005 23 1 3.1300 1.4426 -0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9564 0.8899 26 1 1.6767 -1.7488 1.2494 27 1 1.6766 -0.2072 2.1393 28 1 3.9333 -1.2347 2.1395 29 1 3.9329 0.3073 1.2498 30 1 3.7176 -2.4692 0.0003 31 1 5.8026 -3.0354 1.2336 32 1 7.9997 -1.3141 0.2075 33 1 3.9335 0.3075 -1.2486 34 1 3.9339 -1.2341 -2.1388 35 1 1.6768 -1.7489 -1.2491 36 1 1.6767 -0.2075 -2.1392 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306419403.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:29 Heat of formation + Delta-G solvation = -116.388001 kcal Electronic energy + Delta-G solvation = -15140.147133 eV Core-core repulsion = 12814.494493 eV Total energy + Delta-G solvation = -2325.652639 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.65615 -37.90353 -34.27506 -34.01969 -31.67549 -29.07189 -28.18036 -26.47952 -23.91103 -23.47491 -21.47638 -19.47939 -19.08059 -17.14625 -16.29947 -15.76479 -15.67777 -15.41645 -14.90829 -14.78618 -14.51357 -13.78216 -13.43389 -13.37065 -13.09668 -12.74531 -12.61542 -12.56298 -12.23153 -12.14928 -11.96305 -11.80139 -11.71016 -11.44276 -11.03287 -10.93658 -10.67261 -10.56604 -9.89422 -8.57364 -6.40639 1.51475 1.59237 1.78376 2.57008 3.19202 3.75437 3.76361 3.90351 4.00666 4.20207 4.41946 4.45740 4.52205 4.57597 4.67156 4.73686 4.81915 4.88044 4.95923 5.04007 5.09559 5.17647 5.20814 5.21793 5.27940 5.29448 5.35708 5.55146 5.57989 5.65256 5.76297 5.97135 6.19366 6.60448 7.19779 7.54921 8.79287 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.046828 B = 0.008426 C = 0.007721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.787074 B = 3322.403170 C = 3625.570853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.065 4.065 3 C -0.143 4.143 4 C -0.099 4.099 5 C -0.107 4.107 6 C -0.089 4.089 7 C 0.213 3.787 8 H 0.010 0.990 9 O -0.595 6.595 10 C -0.645 4.645 11 H 0.053 0.947 12 C -0.023 4.023 13 N -0.927 5.927 14 Si 1.112 2.888 15 H -0.287 1.287 16 H -0.269 1.269 17 H -0.271 1.271 18 C -0.100 4.100 19 C -0.101 4.101 20 H 0.062 0.938 21 H 0.060 0.940 22 H 0.056 0.944 23 H 0.041 0.959 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.362 0.638 32 H 0.265 0.735 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.059 0.941 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.341 2.444 0.091 15.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.065 4.065 3 C -0.200 4.200 4 C -0.136 4.136 5 C -0.144 4.144 6 C -0.108 4.108 7 C 0.156 3.844 8 H 0.027 0.973 9 O -0.401 6.401 10 C -0.682 4.682 11 H 0.071 0.929 12 C -0.224 4.224 13 N -0.563 5.563 14 Si 0.934 3.066 15 H -0.213 1.213 16 H -0.194 1.194 17 H -0.196 1.196 18 C -0.137 4.137 19 C -0.138 4.138 20 H 0.081 0.919 21 H 0.079 0.921 22 H 0.075 0.925 23 H 0.060 0.940 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.208 0.792 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.724 2.600 -0.579 13.980 hybrid contribution -1.038 0.022 0.808 1.316 sum -14.762 2.622 0.229 14.995 Atomic orbital electron populations 1.21805 0.93002 1.02034 1.02263 1.20547 0.96178 0.95226 0.94528 1.21946 1.00555 0.95538 1.01967 1.21556 0.93863 1.00464 0.97743 1.21504 0.96379 0.99465 0.97074 1.21506 0.95301 0.98524 0.95468 1.19512 0.90490 0.91066 0.83319 0.97256 1.86400 1.78808 1.27922 1.46935 1.22853 0.94633 1.41397 1.09366 0.92912 1.27277 0.94424 0.96294 1.04419 1.70782 1.38171 1.34817 1.12566 0.83019 0.75519 0.76011 0.72050 1.21272 1.19431 1.19609 1.21394 0.95895 0.99309 0.97135 1.21595 0.93984 1.00376 0.97848 0.91878 0.92054 0.92464 0.94029 0.92158 0.91959 0.92072 0.91112 0.93197 0.93419 0.92969 0.79223 0.92452 0.93507 0.93450 0.92213 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 8.47 71.98 0.61 -1.94 16 2 C -0.06 -1.60 0.77 -52.18 -0.04 -1.64 16 3 C -0.14 -3.55 7.78 71.98 0.56 -2.99 16 4 C -0.10 -2.66 4.73 30.60 0.14 -2.52 16 5 C -0.11 -3.74 4.78 30.59 0.15 -3.59 16 6 C -0.09 -3.63 1.92 -10.79 -0.02 -3.65 16 7 C 0.21 11.02 2.01 29.85 0.06 11.08 16 8 H 0.01 0.56 8.00 -2.39 -0.02 0.54 16 9 O -0.60 -31.05 11.35 -148.98 -1.69 -32.74 16 10 C -0.64 -36.14 8.03 25.60 0.21 -35.94 16 11 H 0.05 2.88 6.71 -2.91 -0.02 2.86 16 12 C -0.02 -1.34 5.40 84.65 0.46 -0.89 16 13 N -0.93 -58.74 13.53 21.45 0.29 -58.45 16 14 Si 1.11 50.65 29.90 68.60 2.05 52.71 16 15 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 16 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 17 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 18 C -0.10 -3.72 4.68 30.61 0.14 -3.58 16 19 C -0.10 -2.85 4.74 30.61 0.14 -2.71 16 20 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 21 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.06 1.04 8.14 -2.38 -0.02 1.03 16 23 H 0.04 1.23 4.81 -2.39 -0.01 1.22 16 24 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.05 1.82 7.68 -2.38 -0.02 1.81 16 29 H 0.05 1.74 6.43 -2.39 -0.02 1.73 16 30 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.36 16.87 9.04 -74.06 -0.67 16.20 16 32 H 0.27 17.39 6.47 -92.71 -0.60 16.79 16 33 H 0.05 1.81 6.43 -2.39 -0.02 1.79 16 34 H 0.05 1.96 6.62 -2.39 -0.02 1.94 16 35 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -64.96 273.02 3.60 -61.36 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: 0.54 Total: 25.50 kcal Atomic # 6 Polarization: -50.77 SS G_CDS: 2.41 Total: -48.36 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: 0.29 Total: -58.45 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -1.69 Total: -32.74 kcal Atomic # 14 Polarization: 50.65 SS G_CDS: 2.05 Total: 52.71 kcal Total: -64.96 3.60 -61.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306419403.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.030 kcal (2) G-P(sol) polarization free energy of solvation -64.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds