Wall clock time and date at job start Mon Mar 30 2020 03:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46632 * 2 1 4 4 C 1.52996 * 109.47328 * 119.99976 * 2 1 3 5 5 C 1.52997 * 109.46975 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47415 * 300.00364 * 5 4 2 7 7 C 1.53000 * 109.47233 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47398 * 59.99826 * 7 6 5 9 9 O 1.42903 * 109.46726 * 299.99582 * 7 6 5 10 10 C 1.50699 * 109.47083 * 179.97438 * 7 6 5 11 11 H 1.08000 * 119.99792 * 359.97438 * 10 7 6 12 12 C 1.37878 * 119.99902 * 179.97438 * 10 7 6 13 13 N 1.31522 * 119.99730 * 179.97438 * 12 10 7 14 14 Si 1.86801 * 120.00223 * 0.02562 * 12 10 7 15 15 H 1.48501 * 109.46854 * 89.99533 * 14 12 10 16 16 H 1.48495 * 109.46995 * 209.99565 * 14 12 10 17 17 H 1.48503 * 109.46814 * 329.99605 * 14 12 10 18 18 C 1.52996 * 109.47346 * 59.99864 * 6 5 4 19 19 C 1.52997 * 109.46975 * 300.00405 * 18 6 5 20 20 H 1.09001 * 109.47194 * 299.99548 * 1 2 3 21 21 H 1.09002 * 109.47398 * 59.99728 * 1 2 3 22 22 H 1.09000 * 109.46968 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46832 * 180.02562 * 3 2 1 24 24 H 1.08992 * 109.47199 * 299.99759 * 3 2 1 25 25 H 1.09001 * 109.47420 * 60.00585 * 3 2 1 26 26 H 1.09000 * 109.46870 * 60.00217 * 4 2 1 27 27 H 1.09001 * 109.47367 * 299.99809 * 4 2 1 28 28 H 1.09002 * 109.47497 * 180.02562 * 5 4 2 29 29 H 1.09000 * 109.47140 * 60.00388 * 5 4 2 30 30 H 1.09004 * 109.46733 * 299.99664 * 6 5 4 31 31 H 0.96700 * 114.00234 * 300.00043 * 9 7 6 32 32 H 0.96999 * 119.99784 * 180.02562 * 13 12 10 33 33 H 1.09000 * 109.46870 * 60.00183 * 18 6 5 34 34 H 1.08992 * 109.47554 * 180.02562 * 18 6 5 35 35 H 1.09000 * 109.47140 * 299.99612 * 19 18 6 36 36 H 1.09002 * 109.47045 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7217 1.2488 6 6 4.0795 -1.4433 -0.0005 7 6 5.6095 -1.4443 -0.0006 8 1 5.9726 -1.9584 0.8894 9 8 6.0867 -0.0973 -0.0006 10 6 6.1113 -2.1555 -1.2307 11 1 5.4092 -2.5661 -1.9412 12 6 7.4668 -2.2820 -1.4492 13 7 7.9047 -2.9032 -2.5226 14 14 8.6812 -1.5725 -0.2199 15 1 9.0026 -2.5969 0.8060 16 1 9.9245 -1.1728 -0.9267 17 1 8.0819 -0.3838 0.4382 18 6 3.5695 -0.7220 -1.2497 19 6 2.0395 -0.7215 -1.2493 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1299 1.4426 -0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6766 1.9564 0.8900 26 1 1.6767 -1.7489 1.2492 27 1 1.6768 -0.2074 2.1392 28 1 3.9335 -1.2359 2.1385 29 1 3.9337 0.3058 1.2486 30 1 3.7159 -2.4708 -0.0002 31 1 5.8017 0.4210 -0.7656 32 1 8.8583 -2.9925 -2.6761 33 1 3.9332 0.3055 -1.2499 34 1 3.9320 -1.2363 -2.1397 35 1 1.6758 -1.7491 -1.2491 36 1 1.6761 -0.2073 -2.1391 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306419404.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:32 Heat of formation + Delta-G solvation = -84.555435 kcal Electronic energy + Delta-G solvation = -15253.590051 eV Core-core repulsion = 12929.317776 eV Total energy + Delta-G solvation = -2324.272276 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.36185 -36.10790 -32.31751 -32.17908 -30.33835 -27.94953 -27.13087 -25.26653 -22.43454 -21.77783 -19.43619 -17.95616 -17.09300 -15.07612 -14.83370 -14.69506 -14.46403 -13.78199 -13.63358 -13.02004 -12.77785 -12.35507 -12.17615 -11.95951 -11.61079 -11.52742 -11.43151 -10.97018 -10.89574 -10.62901 -10.50935 -10.30176 -10.07794 -9.61671 -9.51242 -9.44854 -8.80133 -8.55353 -8.09720 -6.06389 -4.15571 3.42401 3.51778 3.78580 4.58854 4.95133 4.98944 5.07494 5.27796 5.52866 5.59408 5.71826 5.77124 5.82379 5.88217 5.93019 5.99909 6.04120 6.05152 6.07944 6.27432 6.28994 6.33996 6.43297 6.54698 6.66957 6.70162 6.77106 6.87978 7.10827 7.15952 7.47707 7.69846 8.37156 8.90633 9.10148 9.59739 11.04307 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.053468 B = 0.008848 C = 0.008348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.555392 B = 3163.625146 C = 3353.329910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.065 4.065 3 C -0.143 4.143 4 C -0.106 4.106 5 C -0.114 4.114 6 C -0.099 4.099 7 C 0.195 3.805 8 H 0.051 0.949 9 O -0.582 6.582 10 C -0.556 4.556 11 H 0.074 0.926 12 C 0.080 3.920 13 N -0.897 5.897 14 Si 0.869 3.131 15 H -0.289 1.289 16 H -0.297 1.297 17 H -0.217 1.217 18 C -0.108 4.108 19 C -0.107 4.107 20 H 0.049 0.951 21 H 0.050 0.950 22 H 0.051 0.949 23 H 0.068 0.932 24 H 0.048 0.952 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.353 0.647 32 H 0.263 0.737 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.948 6.529 5.281 14.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.065 4.065 3 C -0.201 4.201 4 C -0.143 4.143 5 C -0.152 4.152 6 C -0.118 4.118 7 C 0.138 3.862 8 H 0.069 0.931 9 O -0.388 6.388 10 C -0.594 4.594 11 H 0.092 0.908 12 C -0.124 4.124 13 N -0.534 5.534 14 Si 0.696 3.304 15 H -0.216 1.216 16 H -0.224 1.224 17 H -0.140 1.140 18 C -0.146 4.146 19 C -0.144 4.144 20 H 0.068 0.932 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.087 0.913 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.200 0.800 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.541 6.286 5.753 14.346 hybrid contribution 0.451 0.183 -0.077 0.493 sum -11.090 6.469 5.676 14.038 Atomic orbital electron populations 1.21874 0.95550 1.01258 1.01043 1.20528 0.94253 0.95669 0.96046 1.21960 1.02309 0.95190 1.00593 1.21587 0.96769 0.99642 0.96308 1.21610 0.93821 1.01518 0.98226 1.21611 0.98310 0.98555 0.93324 1.19794 0.88569 0.80726 0.97125 0.93136 1.86650 1.77125 1.26201 1.48843 1.21602 0.92849 1.37441 1.07466 0.90792 1.25034 0.98861 0.93393 0.95081 1.69971 1.14636 1.41883 1.26945 0.87061 0.79474 0.82053 0.81839 1.21610 1.22436 1.13966 1.21520 0.93198 1.00494 0.99344 1.21617 0.97153 0.99600 0.96062 0.93200 0.93074 0.93013 0.91288 0.93332 0.93486 0.92602 0.93030 0.93058 0.91432 0.91896 0.80049 0.92779 0.92452 0.90761 0.92561 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.47 37.16 0.31 -1.26 16 2 C -0.06 -0.86 0.77 -154.51 -0.12 -0.97 16 3 C -0.14 -1.83 7.78 37.16 0.29 -1.54 16 4 C -0.11 -1.47 4.73 -26.73 -0.13 -1.60 16 5 C -0.11 -1.88 4.78 -26.73 -0.13 -2.01 16 6 C -0.10 -1.89 2.04 -90.62 -0.18 -2.08 16 7 C 0.20 4.51 2.12 -27.88 -0.06 4.45 16 8 H 0.05 1.23 7.57 -51.93 -0.39 0.84 16 9 O -0.58 -13.07 9.43 -35.23 -0.33 -13.41 16 10 C -0.56 -15.27 8.61 -34.44 -0.30 -15.56 16 11 H 0.07 2.18 6.96 -52.49 -0.37 1.82 16 12 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 13 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 14 Si 0.87 22.07 26.99 -169.99 -4.59 17.48 16 15 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 16 H -0.30 -7.62 7.11 56.52 0.40 -7.21 16 17 H -0.22 -5.38 5.31 56.52 0.30 -5.08 16 18 C -0.11 -1.91 4.37 -26.73 -0.12 -2.02 16 19 C -0.11 -1.57 4.73 -26.73 -0.13 -1.70 16 20 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 0.97 4.81 -51.93 -0.25 0.72 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.13 5.97 -51.93 -0.31 0.82 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.35 7.18 7.33 45.56 0.33 7.52 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.06 0.97 5.07 -51.93 -0.26 0.71 16 34 H 0.07 1.50 6.62 -51.93 -0.34 1.16 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 265.97 15.07 4.01 4.01 Total: -1.00 -29.69 265.97 -6.27 -35.95 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.48 Total: 4.81 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: -0.65 Total: -22.08 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: 0.77 Total: -26.76 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.33 Total: -13.41 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.59 Total: 17.48 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.69 -6.27 -35.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306419404.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.603 kcal (2) G-P(sol) polarization free energy of solvation -29.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds