Wall clock time and date at job start Mon Mar 30 2020 03:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47174 * 2 1 4 4 C 1.52994 * 109.47235 * 239.99871 * 2 1 3 5 5 C 1.52998 * 109.46997 * 119.99864 * 2 1 3 6 6 H 1.09004 * 110.27439 * 299.35972 * 5 2 1 7 7 C 1.54949 * 110.39181 * 177.22046 * 5 2 1 8 8 C 1.55310 * 100.94109 * 204.59590 * 7 5 2 9 9 C 1.54389 * 102.25128 * 34.13116 * 8 7 5 10 10 C 1.52992 * 109.82825 * 219.13114 * 9 8 7 11 11 C 1.50699 * 109.83020 * 98.15538 * 9 8 7 12 12 H 1.08002 * 119.99931 * 6.87426 * 11 9 8 13 13 C 1.37872 * 119.99833 * 186.86448 * 11 9 8 14 14 N 1.31515 * 120.00034 * 6.88939 * 13 11 9 15 15 Si 1.86804 * 120.00125 * 186.87927 * 13 11 9 16 16 H 1.48499 * 109.46588 * 84.98862 * 15 13 11 17 17 H 1.48497 * 109.47378 * 204.98766 * 15 13 11 18 18 H 1.48496 * 109.46932 * 324.99175 * 15 13 11 19 19 O 1.43234 * 107.58928 * 338.64452 * 9 8 7 20 20 H 1.08997 * 109.46990 * 300.00253 * 1 2 3 21 21 H 1.09004 * 109.46924 * 60.00307 * 1 2 3 22 22 H 1.08997 * 109.47013 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47617 * 179.97438 * 3 2 1 24 24 H 1.09000 * 109.47026 * 300.00166 * 3 2 1 25 25 H 1.08998 * 109.47464 * 59.99432 * 3 2 1 26 26 H 1.08997 * 109.47301 * 300.00046 * 4 2 1 27 27 H 1.09004 * 109.47310 * 60.00058 * 4 2 1 28 28 H 1.09006 * 109.47333 * 179.97438 * 4 2 1 29 29 H 1.08998 * 111.12124 * 322.51020 * 7 5 2 30 30 H 1.08997 * 111.13030 * 86.63608 * 7 5 2 31 31 H 1.09005 * 110.84856 * 152.31665 * 8 7 5 32 32 H 1.08995 * 110.84701 * 275.74065 * 8 7 5 33 33 H 1.08998 * 109.47181 * 181.03398 * 10 9 8 34 34 H 1.09005 * 109.47350 * 301.03030 * 10 9 8 35 35 H 1.09001 * 109.47661 * 61.03004 * 10 9 8 36 36 H 0.97005 * 119.99565 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 1.6932 -0.2110 2.1479 7 6 3.5877 -0.7950 1.2361 8 6 3.8313 -2.0359 2.1377 9 6 2.6204 -2.9311 1.7972 10 6 2.1061 -3.6132 3.0664 11 6 3.0224 -3.9707 0.7830 12 1 4.0584 -4.0717 0.4948 13 6 2.0678 -4.7931 0.2233 14 7 0.7930 -4.5833 0.4695 15 14 2.5849 -6.2051 -0.8851 16 1 2.9150 -7.3909 -0.0544 17 1 1.4724 -6.5421 -1.8091 18 1 3.7785 -5.8046 -1.6725 19 8 1.5993 -2.0884 1.2505 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 3.1300 1.4426 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9564 0.8899 26 1 1.6767 -1.7489 -1.2492 27 1 1.6767 -0.2074 -2.1392 28 1 3.1301 -0.7209 -1.2494 29 1 3.9643 -0.9625 0.2271 30 1 4.0275 0.1014 1.6733 31 1 4.7659 -2.5304 1.8728 32 1 3.8271 -1.7567 3.1913 33 1 1.2633 -4.2576 2.8165 34 1 2.9038 -4.2123 3.5057 35 1 1.7849 -2.8557 3.7814 36 1 0.1214 -5.1617 0.0754 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306434306.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:02 Heat of formation + Delta-G solvation = -80.058063 kcal Electronic energy + Delta-G solvation = -15644.038119 eV Core-core repulsion = 13319.960864 eV Total energy + Delta-G solvation = -2324.077255 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.51332 -37.16066 -34.42231 -32.63668 -31.10348 -28.04910 -27.93144 -27.20205 -26.03577 -22.70956 -21.22104 -19.34973 -18.64436 -16.74492 -16.51892 -16.06285 -15.11279 -14.87306 -14.77017 -14.54467 -13.84682 -13.53555 -13.32805 -13.11306 -12.88779 -12.69445 -12.61706 -12.50774 -12.42702 -12.22001 -12.04598 -11.86878 -11.74368 -11.45512 -11.03684 -10.86881 -10.80087 -10.49513 -9.53560 -7.94728 -6.13809 1.40679 1.42279 1.49879 2.47051 3.21052 3.61137 3.92954 4.02167 4.24046 4.30796 4.37924 4.52147 4.68951 4.79419 4.89558 4.92043 4.94752 4.97651 5.02140 5.06621 5.13141 5.16083 5.21294 5.29641 5.32654 5.42058 5.47542 5.50065 5.68584 5.74515 5.84555 6.05179 6.42665 6.75034 7.31483 7.60913 9.07244 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.031969 B = 0.012382 C = 0.010999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.650829 B = 2260.827904 C = 2545.124155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.063 4.063 3 C -0.130 4.130 4 C -0.126 4.126 5 C 0.075 3.925 6 H 0.044 0.956 7 C -0.136 4.136 8 C -0.141 4.141 9 C 0.213 3.787 10 C -0.128 4.128 11 C -0.544 4.544 12 H 0.050 0.950 13 C 0.039 3.961 14 N -0.880 5.880 15 Si 0.934 3.066 16 H -0.275 1.275 17 H -0.289 1.289 18 H -0.271 1.271 19 O -0.363 6.363 20 H 0.054 0.946 21 H 0.062 0.938 22 H 0.029 0.971 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.028 0.972 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.038 0.962 34 H 0.045 0.955 35 H 0.029 0.971 36 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.057 9.770 0.004 10.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.063 4.063 3 C -0.187 4.187 4 C -0.183 4.183 5 C 0.016 3.984 6 H 0.062 0.938 7 C -0.174 4.174 8 C -0.179 4.179 9 C 0.175 3.825 10 C -0.186 4.186 11 C -0.582 4.582 12 H 0.068 0.932 13 C -0.164 4.164 14 N -0.517 5.517 15 Si 0.761 3.239 16 H -0.201 1.201 17 H -0.215 1.215 18 H -0.196 1.196 19 O -0.282 6.282 20 H 0.073 0.927 21 H 0.081 0.919 22 H 0.048 0.952 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.048 0.952 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.673 9.628 -0.099 9.992 hybrid contribution 0.154 -1.241 -0.449 1.329 sum 2.827 8.386 -0.548 8.867 Atomic orbital electron populations 1.21676 0.95029 1.00535 1.01242 1.20593 0.95663 0.95728 0.94343 1.21781 1.01291 0.93265 1.02390 1.21705 1.00363 0.99564 0.96677 1.22949 0.93278 0.86225 0.95904 0.93803 1.23207 0.96142 0.97741 1.00266 1.23128 0.99344 0.96541 0.98842 1.19697 0.84041 0.88306 0.90502 1.21845 1.00389 0.99471 0.96924 1.21498 0.93182 1.17541 1.25959 0.93204 1.25595 0.94926 0.98818 0.97077 1.70231 1.00197 1.37279 1.43986 0.85967 0.77791 0.80856 0.79301 1.20108 1.21480 1.19589 1.88747 1.41119 1.14371 1.83982 0.92692 0.91916 0.95215 0.92007 0.91402 0.92006 0.95281 0.92376 0.92887 0.91263 0.89286 0.91846 0.91697 0.94264 0.93612 0.95215 0.93841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 8.35 71.98 0.60 -3.82 16 2 C -0.06 -2.16 0.65 -52.18 -0.03 -2.20 16 3 C -0.13 -3.29 8.28 71.98 0.60 -2.69 16 4 C -0.13 -4.70 8.01 71.98 0.58 -4.12 16 5 C 0.07 2.96 2.66 31.26 0.08 3.04 16 6 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 7 C -0.14 -4.89 5.44 32.05 0.17 -4.72 16 8 C -0.14 -5.73 6.07 31.86 0.19 -5.53 16 9 C 0.21 10.62 0.82 -11.07 -0.01 10.61 16 10 C -0.13 -6.29 8.61 71.98 0.62 -5.67 16 11 C -0.54 -30.00 8.20 25.60 0.21 -29.79 16 12 H 0.05 2.73 7.46 -2.91 -0.02 2.70 16 13 C 0.04 2.16 5.21 84.65 0.44 2.61 16 14 N -0.88 -52.08 11.30 21.45 0.24 -51.84 16 15 Si 0.93 44.29 29.54 68.60 2.03 46.32 16 16 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 17 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 18 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 19 O -0.36 -18.47 8.07 -148.98 -1.20 -19.67 16 20 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 21 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 22 H 0.03 1.26 7.76 -2.39 -0.02 1.24 16 23 H 0.06 1.46 7.28 -2.39 -0.02 1.45 16 24 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.03 1.35 7.68 -2.39 -0.02 1.33 16 27 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 28 H 0.05 1.90 6.06 -2.38 -0.01 1.88 16 29 H 0.07 2.59 5.76 -2.39 -0.01 2.58 16 30 H 0.09 2.56 8.05 -2.39 -0.02 2.54 16 31 H 0.06 2.56 7.59 -2.38 -0.02 2.54 16 32 H 0.06 2.37 7.86 -2.39 -0.02 2.35 16 33 H 0.04 2.14 6.83 -2.39 -0.02 2.12 16 34 H 0.04 2.07 8.14 -2.38 -0.02 2.05 16 35 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.25 14.42 8.31 -92.70 -0.77 13.65 16 Total: -1.00 -62.12 278.32 5.54 -56.59 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 1.02 Total: 10.88 kcal Atomic # 6 Polarization: -45.73 SS G_CDS: 3.45 Total: -42.28 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: 0.24 Total: -51.84 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -1.20 Total: -19.67 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -62.12 5.54 -56.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306434306.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.471 kcal (2) G-P(sol) polarization free energy of solvation -62.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds