Wall clock time and date at job start Mon Mar 30 2020 03:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47039 * 2 1 4 4 C 1.53001 * 109.46916 * 239.99954 * 2 1 3 5 5 C 1.53004 * 109.47037 * 120.00153 * 2 1 3 6 6 H 1.09002 * 110.27448 * 179.29812 * 5 2 1 7 7 C 1.54945 * 110.39100 * 301.44404 * 5 2 1 8 8 C 1.55304 * 100.94045 * 155.40253 * 7 5 2 9 9 C 1.54376 * 102.25567 * 325.86882 * 8 7 5 10 10 C 1.53000 * 109.90941 * 140.90833 * 9 8 7 11 11 C 1.50698 * 109.82967 * 261.84170 * 9 8 7 12 12 H 1.07996 * 120.00389 * 359.58312 * 11 9 8 13 13 C 1.37881 * 119.99958 * 179.58600 * 11 9 8 14 14 N 1.31519 * 120.00073 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 120.00072 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46834 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47251 * 119.99943 * 15 13 11 18 18 H 1.48504 * 109.47356 * 240.00035 * 15 13 11 19 19 O 1.43240 * 107.58930 * 21.35352 * 9 8 7 20 20 H 1.08997 * 109.47050 * 299.99613 * 1 2 3 21 21 H 1.08995 * 109.47116 * 60.00310 * 1 2 3 22 22 H 1.09005 * 109.47304 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46948 * 179.97438 * 3 2 1 24 24 H 1.09000 * 109.47348 * 299.99965 * 3 2 1 25 25 H 1.08997 * 109.46883 * 60.00285 * 3 2 1 26 26 H 1.09002 * 109.47207 * 299.99541 * 4 2 1 27 27 H 1.09000 * 109.47103 * 60.00260 * 4 2 1 28 28 H 1.09001 * 109.46834 * 180.02562 * 4 2 1 29 29 H 1.08997 * 111.12470 * 273.31972 * 7 5 2 30 30 H 1.08995 * 111.12619 * 37.48960 * 7 5 2 31 31 H 1.08998 * 110.85543 * 207.67443 * 8 7 5 32 32 H 1.09009 * 111.02412 * 84.13543 * 8 7 5 33 33 H 1.08995 * 109.47280 * 300.36699 * 10 9 8 34 34 H 1.09006 * 109.46823 * 60.36779 * 10 9 8 35 35 H 1.09006 * 109.47325 * 180.36445 * 10 9 8 36 36 H 0.97001 * 120.00102 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2493 6 1 3.1298 -0.7398 1.2563 7 6 1.5056 -0.0290 2.5283 8 6 1.5642 -1.2019 3.5446 9 6 1.2348 -2.4213 2.6571 10 6 2.1013 -3.6137 3.0675 11 6 -0.2230 -2.7767 2.7973 12 1 -0.8579 -2.2024 3.4556 13 6 -0.7461 -3.8351 2.0851 14 7 0.0270 -4.5342 1.2831 15 14 -2.5532 -4.2752 2.2583 16 1 -3.2005 -3.3416 3.2147 17 1 -3.2178 -4.1682 0.9346 18 1 -2.6778 -5.6660 2.7637 19 8 1.5183 -2.0587 1.3007 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9562 0.8900 26 1 1.6767 -1.7490 -1.2492 27 1 1.6766 -0.2074 -2.1392 28 1 3.1300 -0.7217 -1.2490 29 1 2.1581 0.7887 2.8342 30 1 0.4821 0.3187 2.3884 31 1 0.8142 -1.0765 4.3255 32 1 2.5604 -1.2949 3.9774 33 1 3.1538 -3.3539 2.9544 34 1 1.8997 -3.8683 4.1080 35 1 1.8677 -4.4683 2.4325 36 1 -0.3409 -5.2790 0.7823 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306434307.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:06 Heat of formation + Delta-G solvation = -65.094913 kcal Electronic energy + Delta-G solvation = -15614.619618 eV Core-core repulsion = 13291.191214 eV Total energy + Delta-G solvation = -2323.428404 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.88648 -35.61280 -32.50173 -30.89286 -29.22043 -26.70950 -26.58145 -25.21691 -24.29099 -21.13507 -19.35703 -17.89489 -16.69948 -15.07273 -14.70506 -14.38923 -13.48679 -13.41441 -13.20640 -12.75247 -12.24241 -11.90625 -11.72794 -11.56537 -11.21138 -11.04166 -10.94437 -10.84006 -10.60281 -10.47478 -10.40503 -10.17081 -10.03804 -9.94653 -9.45977 -9.23949 -9.01083 -8.41739 -7.70434 -5.87568 -4.02692 3.32075 3.40753 3.43757 4.47495 4.98246 5.34399 5.43015 5.46141 5.74186 5.78827 5.87175 5.96092 6.05129 6.15016 6.28957 6.32048 6.36853 6.42199 6.51180 6.63209 6.66926 6.73537 6.83847 6.89688 6.98108 6.99343 7.10418 7.18523 7.28481 7.48081 7.85324 8.17836 8.46901 8.75180 9.16719 9.67676 11.14166 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.031800 B = 0.012226 C = 0.010934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.293673 B = 2289.592889 C = 2560.196316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.064 4.064 3 C -0.138 4.138 4 C -0.133 4.133 5 C 0.088 3.912 6 H 0.040 0.960 7 C -0.147 4.147 8 C -0.144 4.144 9 C 0.228 3.772 10 C -0.141 4.141 11 C -0.525 4.525 12 H 0.056 0.944 13 C 0.082 3.918 14 N -0.860 5.860 15 Si 0.882 3.118 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.285 1.285 19 O -0.343 6.343 20 H 0.050 0.950 21 H 0.036 0.964 22 H 0.076 0.924 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.041 0.959 28 H 0.043 0.957 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.047 0.953 33 H 0.009 0.991 34 H 0.034 0.966 35 H 0.089 0.911 36 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.085 7.915 -1.124 8.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.064 4.064 3 C -0.195 4.195 4 C -0.190 4.190 5 C 0.029 3.971 6 H 0.058 0.942 7 C -0.185 4.185 8 C -0.182 4.182 9 C 0.191 3.809 10 C -0.198 4.198 11 C -0.563 4.563 12 H 0.074 0.926 13 C -0.123 4.123 14 N -0.497 5.497 15 Si 0.710 3.290 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.211 1.211 19 O -0.263 6.263 20 H 0.069 0.931 21 H 0.055 0.945 22 H 0.095 0.905 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.028 0.972 34 H 0.053 0.947 35 H 0.108 0.892 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.056 7.615 -1.421 8.328 hybrid contribution -0.924 -0.098 0.286 0.972 sum 2.132 7.518 -1.135 7.896 Atomic orbital electron populations 1.21801 0.94174 1.03539 0.99579 1.20563 0.96492 0.93790 0.95535 1.21855 1.00344 0.96200 1.01148 1.21747 0.99755 1.01665 0.95857 1.22631 0.95298 0.86419 0.92734 0.94241 1.23253 1.01366 0.97500 0.96350 1.23200 0.99663 0.96590 0.98707 1.19609 0.94049 0.88934 0.78307 1.22006 0.95135 1.02775 0.99911 1.21242 0.94058 1.14362 1.26621 0.92580 1.24963 0.97047 0.95788 0.94502 1.69973 1.34497 1.18978 1.26271 0.86720 0.86209 0.78193 0.77883 1.19859 1.21004 1.21106 1.88729 1.83205 1.25269 1.29084 0.93093 0.94523 0.90479 0.93290 0.93141 0.92837 0.91191 0.94000 0.93767 0.92784 0.90545 0.91653 0.93395 0.97166 0.94740 0.89220 0.93310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.03 37.16 0.30 -2.21 16 2 C -0.06 -1.13 0.65 -154.51 -0.10 -1.23 16 3 C -0.14 -1.99 8.26 37.16 0.31 -1.68 16 4 C -0.13 -2.32 8.36 37.16 0.31 -2.01 16 5 C 0.09 1.79 2.66 -25.70 -0.07 1.73 16 6 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 7 C -0.15 -2.81 5.38 -24.48 -0.13 -2.94 16 8 C -0.14 -3.06 6.08 -24.79 -0.15 -3.21 16 9 C 0.23 5.73 0.82 -91.05 -0.07 5.66 16 10 C -0.14 -3.49 8.52 37.16 0.32 -3.18 16 11 C -0.52 -14.34 8.23 -34.44 -0.28 -14.63 16 12 H 0.06 1.53 7.48 -52.49 -0.39 1.13 16 13 C 0.08 2.26 5.26 -17.82 -0.09 2.16 16 14 N -0.86 -24.66 10.93 55.43 0.61 -24.05 16 15 Si 0.88 21.27 29.54 -169.99 -5.02 16.25 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 O -0.34 -8.65 8.61 -35.23 -0.30 -8.95 16 20 H 0.05 0.93 6.10 -51.93 -0.32 0.61 16 21 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.08 1.74 7.65 -51.93 -0.40 1.34 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.74 7.24 -51.93 -0.38 0.36 16 26 H 0.07 1.42 7.80 -51.93 -0.40 1.02 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.88 8.05 -51.93 -0.42 0.47 16 30 H 0.08 1.49 5.82 -51.93 -0.30 1.18 16 31 H 0.06 1.37 7.60 -51.93 -0.39 0.98 16 32 H 0.05 0.94 7.85 -51.92 -0.41 0.54 16 33 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 2.46 6.04 -51.93 -0.31 2.15 16 36 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 277.73 15.07 4.19 4.19 Total: -1.00 -28.49 277.73 -6.44 -34.94 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.24 Total: -0.83 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: 0.33 Total: -21.54 kcal Atomic # 7 Polarization: -24.66 SS G_CDS: 0.61 Total: -24.05 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -0.30 Total: -8.95 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.49 -6.44 -34.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306434307.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.156 kcal (2) G-P(sol) polarization free energy of solvation -28.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds