Wall clock time and date at job start Mon Mar 30 2020 03:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 C 1.53003 * 109.47015 * 64.99921 * 4 2 1 6 6 H 1.09005 * 110.55110 * 52.12151 * 5 4 2 7 7 C 1.54999 * 110.62144 * 175.00162 * 5 4 2 8 8 C 1.54806 * 102.09199 * 155.52848 * 7 5 4 9 9 C 1.54102 * 104.18669 * 339.11882 * 8 7 5 10 10 C 1.53004 * 109.87914 * 238.54788 * 9 8 7 11 11 C 1.50695 * 109.87886 * 117.40023 * 9 8 7 12 12 H 1.08004 * 119.99946 * 359.97438 * 11 9 8 13 13 C 1.37875 * 120.00482 * 179.97438 * 11 9 8 14 14 N 1.31521 * 119.99830 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00283 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46819 * 90.00412 * 15 13 11 17 17 H 1.48501 * 109.46975 * 209.99954 * 15 13 11 18 18 H 1.48498 * 109.47181 * 330.00225 * 15 13 11 19 19 O 1.43739 * 107.29498 * 357.96968 * 9 8 7 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 23 23 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 24 24 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 25 25 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 27 27 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 28 28 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 29 29 H 1.08996 * 110.90621 * 273.72445 * 7 5 4 30 30 H 1.09003 * 110.90284 * 37.29108 * 7 5 4 31 31 H 1.09001 * 110.49038 * 97.79876 * 8 7 5 32 32 H 1.09001 * 110.48591 * 220.44330 * 8 7 5 33 33 H 1.08997 * 109.46881 * 59.99944 * 10 9 8 34 34 H 1.08997 * 109.47038 * 180.02562 * 10 9 8 35 35 H 1.09001 * 109.47118 * 300.00249 * 10 9 8 36 36 H 0.96991 * 120.00220 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6352 -2.1954 1.1881 6 1 1.9422 -2.6375 0.2402 7 6 2.2450 -2.9787 2.3785 8 6 1.2698 -4.1734 2.5141 9 6 -0.0167 -3.6919 1.8157 10 6 -1.1886 -3.7323 2.7986 11 6 -0.3122 -4.5679 0.6256 12 1 0.3462 -5.3888 0.3825 13 6 -1.4229 -4.3213 -0.1531 14 7 -2.2250 -3.3220 0.1431 15 14 -1.7888 -5.4067 -1.6288 16 1 -2.6447 -6.5444 -1.2063 17 1 -2.4972 -4.6121 -2.6642 18 1 -0.5154 -5.9265 -2.1888 19 8 0.2121 -2.3404 1.3831 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 1.6767 1.9563 0.8899 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9564 -0.8900 27 1 3.1263 -0.6442 1.2952 28 1 1.6054 -0.2617 2.1370 29 1 3.2518 -3.3233 2.1425 30 1 2.2458 -2.3717 3.2839 31 1 1.6713 -5.0527 2.0103 32 1 1.0755 -4.3899 3.5646 33 1 -0.9743 -3.0814 3.6462 34 1 -2.0946 -3.3911 2.2979 35 1 -1.3316 -4.7536 3.1517 36 1 -3.0062 -3.1483 -0.4049 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306470373.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:07 Heat of formation + Delta-G solvation = -85.288825 kcal Electronic energy + Delta-G solvation = -15371.039542 eV Core-core repulsion = 13046.735464 eV Total energy + Delta-G solvation = -2324.304078 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.20401 -37.00025 -34.68162 -32.58973 -31.91060 -28.61809 -27.78033 -27.23842 -24.48947 -21.86959 -21.11579 -20.76936 -18.41837 -17.07056 -16.52018 -16.05638 -15.48000 -14.89081 -14.76633 -14.23138 -13.99986 -13.68128 -13.22269 -12.98146 -12.85249 -12.79915 -12.74845 -12.55763 -12.37501 -12.22090 -12.01895 -11.78558 -11.45513 -11.37778 -11.14988 -10.92318 -10.74842 -10.48056 -9.67113 -7.95847 -6.18786 1.39316 1.41520 1.49608 2.44991 3.19280 3.64194 3.88975 4.09882 4.20611 4.29363 4.39993 4.50356 4.71285 4.76007 4.83962 4.94253 4.96341 5.01114 5.03594 5.08332 5.11856 5.15395 5.20789 5.27910 5.36923 5.44776 5.51271 5.59914 5.64694 5.76334 5.97661 6.16960 6.39577 6.77744 7.11595 7.56244 9.02614 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.027416 B = 0.012156 C = 0.009905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.047419 B = 2302.829010 C = 2826.227063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.137 4.137 4 C -0.096 4.096 5 C 0.071 3.929 6 H 0.032 0.968 7 C -0.139 4.139 8 C -0.141 4.141 9 C 0.207 3.793 10 C -0.124 4.124 11 C -0.556 4.556 12 H 0.045 0.955 13 C 0.038 3.962 14 N -0.881 5.881 15 Si 0.938 3.062 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.274 1.274 19 O -0.364 6.364 20 H 0.064 0.936 21 H 0.037 0.963 22 H 0.038 0.962 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.027 0.973 34 H 0.061 0.939 35 H 0.039 0.961 36 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.210 5.038 2.001 9.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.194 4.194 4 C -0.133 4.133 5 C 0.013 3.987 6 H 0.050 0.950 7 C -0.177 4.177 8 C -0.179 4.179 9 C 0.169 3.831 10 C -0.182 4.182 11 C -0.594 4.594 12 H 0.063 0.937 13 C -0.164 4.164 14 N -0.519 5.519 15 Si 0.765 3.235 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.198 1.198 19 O -0.284 6.284 20 H 0.083 0.917 21 H 0.056 0.944 22 H 0.058 0.942 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.108 0.892 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.877 5.294 1.926 9.684 hybrid contribution -0.531 -0.993 -0.923 1.456 sum 7.346 4.301 1.003 8.572 Atomic orbital electron populations 1.21890 0.96062 1.03123 0.99222 1.21037 0.95398 0.96861 0.97638 1.21781 1.01247 0.94617 1.01750 1.21652 1.00847 0.92717 0.98128 1.22947 0.84034 0.95717 0.96011 0.95021 1.23068 0.98897 0.96741 0.98966 1.22984 0.96662 0.98313 0.99974 1.19703 0.91162 0.81049 0.91215 1.21681 1.01585 0.98332 0.96556 1.21766 1.09600 1.14435 1.13589 0.93690 1.25592 0.95845 0.95663 0.99304 1.70078 1.13988 1.29025 1.38780 0.85893 0.78116 0.79233 0.80284 1.20143 1.21174 1.19843 1.89005 1.20690 1.30914 1.87777 0.91688 0.94433 0.94246 0.92738 0.92641 0.91395 0.92679 0.89170 0.92024 0.89923 0.90495 0.92648 0.91730 0.95376 0.92056 0.94230 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.77 8.61 71.98 0.62 -5.15 16 2 C -0.09 -2.96 2.92 -10.79 -0.03 -3.00 16 3 C -0.14 -3.39 9.19 71.98 0.66 -2.73 16 4 C -0.10 -3.10 4.54 30.60 0.14 -2.96 16 5 C 0.07 2.86 3.12 31.28 0.10 2.96 16 6 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 7 C -0.14 -4.86 6.59 31.89 0.21 -4.65 16 8 C -0.14 -5.83 6.26 31.58 0.20 -5.63 16 9 C 0.21 10.33 0.74 -11.17 -0.01 10.32 16 10 C -0.12 -6.14 8.45 71.98 0.61 -5.53 16 11 C -0.56 -30.76 8.19 25.60 0.21 -30.55 16 12 H 0.04 2.49 7.33 -2.91 -0.02 2.46 16 13 C 0.04 2.14 5.26 84.65 0.45 2.58 16 14 N -0.88 -50.87 10.93 21.45 0.23 -50.64 16 15 Si 0.94 44.16 29.54 68.60 2.03 46.18 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 17 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 18 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 19 O -0.36 -18.04 7.15 -148.98 -1.06 -19.11 16 20 H 0.06 3.22 5.55 -2.39 -0.01 3.21 16 21 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 23 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.08 2.43 8.06 -2.39 -0.02 2.41 16 31 H 0.05 2.30 7.39 -2.39 -0.02 2.28 16 32 H 0.06 2.43 7.70 -2.39 -0.02 2.41 16 33 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 3.39 6.00 -2.39 -0.01 3.38 16 35 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -60.33 280.87 5.36 -54.97 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 1.01 Total: 12.92 kcal Atomic # 6 Polarization: -47.48 SS G_CDS: 3.15 Total: -44.33 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.23 Total: -50.64 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -1.06 Total: -19.11 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -60.33 5.36 -54.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306470373.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.314 kcal (2) G-P(sol) polarization free energy of solvation -60.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds