Wall clock time and date at job start Mon Mar 30 2020 03:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47142 * 2 1 4 4 C 1.53005 * 109.47064 * 119.99681 * 2 1 3 5 5 C 1.53000 * 109.46867 * 174.99813 * 4 2 1 6 6 H 1.09002 * 110.27543 * 305.70225 * 5 4 2 7 7 C 1.54941 * 110.30657 * 183.60918 * 5 4 2 8 8 C 1.55307 * 100.94052 * 204.53993 * 7 5 4 9 9 C 1.54378 * 102.25419 * 34.13841 * 8 7 5 10 10 C 1.52999 * 109.83017 * 98.15159 * 9 8 7 11 11 C 1.50701 * 109.83093 * 219.03646 * 9 8 7 12 12 H 1.07995 * 119.99651 * 359.97438 * 11 9 8 13 13 C 1.37876 * 120.00008 * 179.97438 * 11 9 8 14 14 N 1.31522 * 119.99856 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00168 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46668 * 60.00196 * 15 13 11 17 17 H 1.48491 * 109.47249 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.46840 * 300.00333 * 15 13 11 19 19 O 1.43470 * 107.62013 * 338.65071 * 9 8 7 20 20 H 1.09003 * 109.46671 * 300.00179 * 1 2 3 21 21 H 1.08998 * 109.46951 * 60.00048 * 1 2 3 22 22 H 1.08998 * 109.46922 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47216 * 239.99747 * 2 1 3 24 24 H 1.09003 * 109.47256 * 59.99816 * 3 2 1 25 25 H 1.09005 * 109.47409 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.47158 * 299.99825 * 3 2 1 27 27 H 1.08993 * 109.46902 * 55.00135 * 4 2 1 28 28 H 1.08993 * 109.46975 * 295.00143 * 4 2 1 29 29 H 1.08998 * 111.13020 * 322.46410 * 7 5 4 30 30 H 1.09006 * 111.12408 * 86.58762 * 7 5 4 31 31 H 1.09009 * 110.84545 * 152.32627 * 8 7 5 32 32 H 1.08997 * 110.85171 * 275.94467 * 8 7 5 33 33 H 1.08996 * 109.47316 * 60.00702 * 10 9 8 34 34 H 1.09009 * 109.46714 * 180.02562 * 10 9 8 35 35 H 1.08996 * 109.47721 * 300.00113 * 10 9 8 36 36 H 0.96995 * 119.99907 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.8310 1.1880 6 1 3.8723 -1.3034 0.2550 7 6 4.0950 -1.6381 2.3997 8 6 5.5463 -1.0949 2.5035 9 6 5.3769 0.3771 2.0698 10 6 5.2839 1.2747 3.3054 11 6 6.5480 0.7975 1.2196 12 1 7.3390 0.0944 1.0044 13 6 6.6096 2.0798 0.7167 14 7 5.6466 2.9362 0.9793 15 14 8.0616 2.6012 -0.3366 16 1 8.1326 1.7387 -1.5434 17 1 7.8900 4.0170 -0.7502 18 1 9.3159 2.4621 0.4459 19 8 4.1637 0.4691 1.3097 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.6767 1.9564 0.8900 25 1 3.1301 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6054 -1.7197 1.2952 28 1 1.7517 -0.1583 2.1369 29 1 3.5257 -1.4126 3.3014 30 1 4.0894 -2.7081 2.1917 31 1 5.9116 -1.1577 3.5286 32 1 6.2093 -1.6265 1.8210 33 1 6.1948 1.1759 3.8957 34 1 5.1641 2.3120 2.9925 35 1 4.4262 0.9759 3.9079 36 1 5.6901 3.8383 0.6258 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306470377.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:14 Heat of formation + Delta-G solvation = -69.714638 kcal Electronic energy + Delta-G solvation = -15346.646125 eV Core-core repulsion = 13023.017395 eV Total energy + Delta-G solvation = -2323.628730 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.55257 -35.51996 -32.76035 -30.93248 -30.07542 -27.00029 -26.37723 -25.17665 -22.91233 -20.30323 -19.47701 -19.20328 -16.40439 -15.50546 -14.61337 -14.52433 -13.81230 -13.43203 -12.96980 -12.64283 -12.17640 -12.07160 -11.69385 -11.56868 -11.26541 -11.09834 -10.96567 -10.80850 -10.68112 -10.43711 -10.30345 -10.10023 -9.93429 -9.89959 -9.55970 -9.17069 -8.97825 -8.38888 -7.74022 -5.87784 -4.03781 3.34876 3.39826 3.42302 4.47474 5.00423 5.26191 5.44787 5.50265 5.60671 5.65910 5.83502 5.97349 6.04540 6.16520 6.24991 6.30154 6.34111 6.44715 6.56429 6.62723 6.64640 6.69941 6.81987 6.85037 6.97299 7.01852 7.07918 7.20023 7.47040 7.73734 7.85771 8.18783 8.46808 8.74608 9.14311 9.66872 11.13289 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.030445 B = 0.011347 C = 0.009376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.468286 B = 2467.061360 C = 2985.612111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 C -0.149 4.149 4 C -0.109 4.109 5 C 0.077 3.923 6 H 0.048 0.952 7 C -0.153 4.153 8 C -0.141 4.141 9 C 0.225 3.775 10 C -0.137 4.137 11 C -0.533 4.533 12 H 0.055 0.945 13 C 0.082 3.918 14 N -0.859 5.859 15 Si 0.885 3.115 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.278 1.278 19 O -0.340 6.340 20 H 0.050 0.950 21 H 0.048 0.952 22 H 0.045 0.955 23 H 0.060 0.940 24 H 0.043 0.957 25 H 0.108 0.892 26 H 0.029 0.971 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.032 0.968 34 H 0.090 0.910 35 H 0.010 0.990 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.127 -5.659 0.610 8.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 C -0.206 4.206 4 C -0.146 4.146 5 C 0.018 3.982 6 H 0.066 0.934 7 C -0.191 4.191 8 C -0.178 4.178 9 C 0.188 3.812 10 C -0.195 4.195 11 C -0.571 4.571 12 H 0.073 0.927 13 C -0.123 4.123 14 N -0.496 5.496 15 Si 0.712 3.288 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.204 1.204 19 O -0.260 6.260 20 H 0.069 0.931 21 H 0.067 0.933 22 H 0.064 0.936 23 H 0.078 0.922 24 H 0.063 0.937 25 H 0.126 0.874 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.108 0.892 35 H 0.029 0.971 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.274 -5.264 0.506 8.206 hybrid contribution 0.849 0.040 -0.506 0.989 sum -5.425 -5.223 0.000 7.531 Atomic orbital electron populations 1.21869 0.96677 1.00512 1.01168 1.21041 0.93983 0.98127 0.97738 1.21997 1.05885 0.93527 0.99147 1.21787 0.95397 0.99102 0.98334 1.22676 0.91993 0.87626 0.95878 0.93379 1.23244 0.97856 0.98920 0.99086 1.23193 0.94919 0.99347 1.00381 1.19670 0.83852 0.88477 0.89209 1.21962 0.96603 1.04833 0.96089 1.21252 1.05239 0.97060 1.33562 0.92688 1.24962 0.95329 0.96569 0.95413 1.69938 1.31326 1.04959 1.43330 0.86809 0.83297 0.77554 0.81113 1.20332 1.21299 1.20378 1.88787 1.39027 1.23548 1.74605 0.93103 0.93336 0.93626 0.92190 0.93750 0.87408 0.95195 0.92634 0.91919 0.91829 0.92310 0.92492 0.91998 0.94895 0.89175 0.97127 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.19 37.16 0.34 -1.67 16 2 C -0.09 -1.53 2.92 -90.62 -0.26 -1.79 16 3 C -0.15 -2.93 8.60 37.16 0.32 -2.61 16 4 C -0.11 -1.87 4.54 -26.73 -0.12 -1.99 16 5 C 0.08 1.55 3.35 -25.71 -0.09 1.47 16 6 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 7 C -0.15 -2.82 6.57 -24.48 -0.16 -2.98 16 8 C -0.14 -2.97 6.07 -24.79 -0.15 -3.12 16 9 C 0.23 5.61 0.82 -91.05 -0.07 5.54 16 10 C -0.14 -3.37 8.50 37.16 0.32 -3.05 16 11 C -0.53 -14.68 8.22 -34.44 -0.28 -14.96 16 12 H 0.05 1.50 7.52 -52.49 -0.39 1.11 16 13 C 0.08 2.27 5.26 -17.82 -0.09 2.18 16 14 N -0.86 -24.28 10.92 55.43 0.61 -23.67 16 15 Si 0.88 21.28 29.54 -169.99 -5.02 16.26 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 O -0.34 -8.35 6.69 -35.23 -0.24 -8.58 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.11 2.58 5.38 -51.93 -0.28 2.31 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.06 1.12 8.06 -51.93 -0.42 0.70 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.06 1.12 7.82 -51.92 -0.41 0.72 16 32 H 0.06 1.31 7.66 -51.93 -0.40 0.91 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 2.44 6.01 -51.92 -0.31 2.13 16 35 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 280.98 15.07 4.23 4.23 Total: -1.00 -27.95 280.98 -7.09 -35.05 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -6.42 Total: -0.28 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: -0.26 Total: -23.00 kcal Atomic # 7 Polarization: -24.28 SS G_CDS: 0.61 Total: -23.67 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.24 Total: -8.58 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.95 -7.09 -35.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306470377.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.670 kcal (2) G-P(sol) polarization free energy of solvation -27.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds