Wall clock time and date at job start Mon Mar 30 2020 03:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47142 * 2 1 4 4 C 1.53005 * 109.47064 * 119.99681 * 2 1 3 5 5 C 1.53000 * 109.46867 * 174.99813 * 4 2 1 6 6 H 1.09002 * 110.27543 * 305.70225 * 5 4 2 7 7 C 1.54941 * 110.30657 * 183.60918 * 5 4 2 8 8 C 1.55307 * 100.94052 * 204.53993 * 7 5 4 9 9 C 1.54378 * 102.25419 * 34.13841 * 8 7 5 10 10 C 1.52999 * 109.83017 * 98.15159 * 9 8 7 11 11 C 1.50701 * 109.83093 * 219.03646 * 9 8 7 12 12 H 1.07995 * 119.99651 * 359.97438 * 11 9 8 13 13 C 1.37876 * 120.00008 * 179.97438 * 11 9 8 14 14 N 1.31522 * 119.99856 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00168 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46668 * 60.00196 * 15 13 11 17 17 H 1.48491 * 109.47249 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.46840 * 300.00333 * 15 13 11 19 19 O 1.43470 * 107.62013 * 338.65071 * 9 8 7 20 20 H 1.09003 * 109.46671 * 300.00179 * 1 2 3 21 21 H 1.08998 * 109.46951 * 60.00048 * 1 2 3 22 22 H 1.08998 * 109.46922 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47216 * 239.99747 * 2 1 3 24 24 H 1.09003 * 109.47256 * 59.99816 * 3 2 1 25 25 H 1.09005 * 109.47409 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.47158 * 299.99825 * 3 2 1 27 27 H 1.08993 * 109.46902 * 55.00135 * 4 2 1 28 28 H 1.08993 * 109.46975 * 295.00143 * 4 2 1 29 29 H 1.08998 * 111.13020 * 322.46410 * 7 5 4 30 30 H 1.09006 * 111.12408 * 86.58762 * 7 5 4 31 31 H 1.09009 * 110.84545 * 152.32627 * 8 7 5 32 32 H 1.08997 * 110.85171 * 275.94467 * 8 7 5 33 33 H 1.08996 * 109.47316 * 60.00702 * 10 9 8 34 34 H 1.09009 * 109.46714 * 180.02562 * 10 9 8 35 35 H 1.08996 * 109.47721 * 300.00113 * 10 9 8 36 36 H 0.96995 * 119.99907 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.8310 1.1880 6 1 3.8723 -1.3034 0.2550 7 6 4.0950 -1.6381 2.3997 8 6 5.5463 -1.0949 2.5035 9 6 5.3769 0.3771 2.0698 10 6 5.2839 1.2747 3.3054 11 6 6.5480 0.7975 1.2196 12 1 7.3390 0.0944 1.0044 13 6 6.6096 2.0798 0.7167 14 7 5.6466 2.9362 0.9793 15 14 8.0616 2.6012 -0.3366 16 1 8.1326 1.7387 -1.5434 17 1 7.8900 4.0170 -0.7502 18 1 9.3159 2.4621 0.4459 19 8 4.1637 0.4691 1.3097 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.6767 1.9564 0.8900 25 1 3.1301 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6054 -1.7197 1.2952 28 1 1.7517 -0.1583 2.1369 29 1 3.5257 -1.4126 3.3014 30 1 4.0894 -2.7081 2.1917 31 1 5.9116 -1.1577 3.5286 32 1 6.2093 -1.6265 1.8210 33 1 6.1948 1.1759 3.8957 34 1 5.1641 2.3120 2.9925 35 1 4.4262 0.9759 3.9079 36 1 5.6901 3.8383 0.6258 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306470377.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:13 Heat of formation + Delta-G solvation = -84.377881 kcal Electronic energy + Delta-G solvation = -15347.281971 eV Core-core repulsion = 13023.017395 eV Total energy + Delta-G solvation = -2324.264576 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.23473 -36.98892 -34.71662 -32.65297 -31.82987 -28.58036 -27.77767 -27.24159 -24.54881 -21.85110 -21.20102 -20.72605 -18.38862 -17.17921 -16.49405 -16.10308 -15.46549 -14.84307 -14.72107 -14.18764 -13.88118 -13.71949 -13.31252 -12.95389 -12.90661 -12.81541 -12.71412 -12.58367 -12.42872 -12.26286 -11.96444 -11.83248 -11.45434 -11.36375 -11.20169 -10.86690 -10.76027 -10.44221 -9.59711 -7.95733 -6.18381 1.41714 1.42552 1.49442 2.45967 3.16233 3.63525 3.89872 4.04143 4.19969 4.29136 4.35995 4.52268 4.68368 4.74683 4.83865 4.93656 4.96291 5.00254 5.01766 5.06584 5.09894 5.15105 5.20579 5.27094 5.38062 5.44116 5.47726 5.58276 5.65271 5.75858 6.01018 6.20599 6.43329 6.75855 7.25471 7.56976 9.03032 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.030445 B = 0.011347 C = 0.009376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.468286 B = 2467.061360 C = 2985.612111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 C -0.142 4.142 4 C -0.100 4.100 5 C 0.064 3.936 6 H 0.038 0.962 7 C -0.139 4.139 8 C -0.139 4.139 9 C 0.209 3.791 10 C -0.129 4.129 11 C -0.555 4.555 12 H 0.048 0.952 13 C 0.037 3.963 14 N -0.881 5.881 15 Si 0.941 3.059 16 H -0.277 1.277 17 H -0.285 1.285 18 H -0.271 1.271 19 O -0.363 6.363 20 H 0.051 0.949 21 H 0.055 0.945 22 H 0.068 0.932 23 H 0.059 0.941 24 H 0.033 0.967 25 H 0.064 0.936 26 H 0.037 0.963 27 H 0.089 0.911 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.035 0.965 34 H 0.059 0.941 35 H 0.025 0.975 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.100 -7.180 0.654 10.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 C -0.199 4.199 4 C -0.138 4.138 5 C 0.005 3.995 6 H 0.056 0.944 7 C -0.177 4.177 8 C -0.177 4.177 9 C 0.172 3.828 10 C -0.187 4.187 11 C -0.593 4.593 12 H 0.066 0.934 13 C -0.165 4.165 14 N -0.518 5.518 15 Si 0.767 3.233 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.197 1.197 19 O -0.283 6.283 20 H 0.070 0.930 21 H 0.074 0.926 22 H 0.087 0.913 23 H 0.078 0.922 24 H 0.052 0.948 25 H 0.082 0.918 26 H 0.056 0.944 27 H 0.107 0.893 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.245 -6.796 0.552 9.949 hybrid contribution 1.149 0.507 -0.533 1.364 sum -6.096 -6.289 0.019 8.759 Atomic orbital electron populations 1.21787 0.93860 1.02178 1.01646 1.21034 0.96291 0.95769 0.97719 1.21865 1.02920 0.96049 0.99040 1.21745 0.93165 1.00882 0.97997 1.22955 0.93884 0.86281 0.96347 0.94381 1.23197 0.95543 1.00335 0.98605 1.23102 0.96909 0.96945 1.00728 1.19746 0.83528 0.90730 0.88822 1.21833 0.97328 1.03058 0.96464 1.21633 1.06299 0.97233 1.34102 0.93409 1.25627 0.97577 0.96748 0.96593 1.70083 1.32711 1.04919 1.44119 0.85910 0.80724 0.77071 0.79570 1.20279 1.21047 1.19659 1.88777 1.38818 1.26085 1.74669 0.92984 0.92600 0.91339 0.92245 0.94767 0.91755 0.94352 0.89251 0.92651 0.90705 0.89178 0.91274 0.92626 0.94610 0.92237 0.95580 0.93512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.19 71.98 0.66 -2.74 16 2 C -0.09 -2.87 2.92 -10.79 -0.03 -2.90 16 3 C -0.14 -5.61 8.60 71.98 0.62 -4.99 16 4 C -0.10 -3.21 4.54 30.60 0.14 -3.07 16 5 C 0.06 2.48 3.35 31.26 0.10 2.59 16 6 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 7 C -0.14 -4.74 6.57 32.05 0.21 -4.53 16 8 C -0.14 -5.69 6.07 31.85 0.19 -5.50 16 9 C 0.21 10.48 0.82 -11.07 -0.01 10.47 16 10 C -0.13 -6.39 8.50 71.98 0.61 -5.77 16 11 C -0.55 -31.02 8.22 25.60 0.21 -30.81 16 12 H 0.05 2.65 7.52 -2.91 -0.02 2.63 16 13 C 0.04 2.08 5.26 84.65 0.45 2.53 16 14 N -0.88 -51.20 10.92 21.45 0.23 -50.97 16 15 Si 0.94 44.33 29.54 68.60 2.03 46.36 16 16 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 17 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 18 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 19 O -0.36 -18.02 6.69 -148.98 -1.00 -19.01 16 20 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 21 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.03 1.36 8.14 -2.39 -0.02 1.35 16 25 H 0.06 3.17 5.38 -2.38 -0.01 3.16 16 26 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.07 2.39 8.06 -2.39 -0.02 2.37 16 30 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 31 H 0.07 2.61 7.82 -2.38 -0.02 2.59 16 32 H 0.05 2.30 7.66 -2.39 -0.02 2.28 16 33 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.06 3.30 6.01 -2.38 -0.01 3.29 16 35 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.26 14.33 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -60.90 280.98 5.43 -55.47 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 1.01 Total: 12.90 kcal Atomic # 6 Polarization: -47.90 SS G_CDS: 3.16 Total: -44.74 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: 0.23 Total: -50.97 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -1.00 Total: -19.01 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -60.90 5.43 -55.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306470377.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.911 kcal (2) G-P(sol) polarization free energy of solvation -60.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds