Wall clock time and date at job start Mon Mar 30 2020 03:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 H 1.09003 * 110.55071 * 303.57750 * 5 4 2 7 7 C 1.54992 * 110.61916 * 180.52674 * 5 4 2 8 8 C 1.54817 * 102.09157 * 204.47713 * 7 5 4 9 9 C 1.54094 * 104.18777 * 20.87852 * 8 7 5 10 10 C 1.52999 * 109.87842 * 242.60756 * 9 8 7 11 11 C 1.50700 * 110.00408 * 121.52351 * 9 8 7 12 12 H 1.08000 * 119.99770 * 0.64279 * 11 9 8 13 13 C 1.37874 * 120.00063 * 180.63820 * 11 9 8 14 14 N 1.31521 * 120.00242 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00136 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47294 * 90.00058 * 15 13 11 17 17 H 1.48501 * 109.47496 * 210.00456 * 15 13 11 18 18 H 1.48503 * 109.47410 * 330.00500 * 15 13 11 19 19 O 1.43748 * 107.29580 * 2.03335 * 9 8 7 20 20 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 21 21 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 23 23 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 24 24 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 25 25 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 26 26 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 27 27 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 28 28 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 29 29 H 1.09006 * 110.90798 * 322.67001 * 7 5 4 30 30 H 1.09001 * 110.91052 * 86.27956 * 7 5 4 31 31 H 1.09002 * 110.48287 * 262.20325 * 8 7 5 32 32 H 1.08998 * 110.48531 * 139.55710 * 8 7 5 33 33 H 1.09001 * 109.46967 * 179.28449 * 10 9 8 34 34 H 1.08995 * 109.47083 * 299.27900 * 10 9 8 35 35 H 1.08997 * 109.47495 * 59.29129 * 10 9 8 36 36 H 0.96994 * 119.99941 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.8311 -1.1881 6 1 4.0154 0.1554 -1.0781 7 6 4.1115 -1.5470 -2.4494 8 6 5.4586 -2.1160 -1.9410 9 6 5.2985 -2.1539 -0.4089 10 6 6.3268 -1.2286 0.2447 11 6 5.4839 -3.5623 0.0941 12 1 5.7060 -4.3589 -0.6005 13 6 5.3702 -3.8339 1.4410 14 7 5.0994 -2.8639 2.2869 15 14 5.6008 -5.5795 2.0646 16 1 7.0316 -5.8027 2.3938 17 1 4.7751 -5.7835 3.2819 18 1 5.1791 -6.5404 1.0138 19 8 3.9690 -1.6982 -0.1067 20 1 -0.3633 0.5140 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5139 0.8900 24 1 3.1301 1.4425 0.0005 25 1 1.6768 1.9563 -0.8899 26 1 1.6768 1.9562 0.8901 27 1 1.6053 -1.7198 -1.2953 28 1 1.7516 -0.1582 -2.1370 29 1 3.4432 -2.3497 -2.7614 30 1 4.2706 -0.8373 -3.2613 31 1 6.2810 -1.4583 -2.2225 32 1 5.6206 -3.1202 -2.3327 33 1 6.1993 -1.2508 1.3270 34 1 7.3318 -1.5651 -0.0097 35 1 6.1817 -0.2108 -0.1173 36 1 5.0190 -3.0551 3.2344 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306470380.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:17 Heat of formation + Delta-G solvation = -72.333277 kcal Electronic energy + Delta-G solvation = -15170.098390 eV Core-core repulsion = 12846.356107 eV Total energy + Delta-G solvation = -2323.742283 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.54548 -35.69357 -32.77759 -30.82428 -30.06289 -27.10622 -26.76007 -25.22319 -23.03247 -20.24852 -19.67977 -18.86344 -16.68490 -15.38427 -14.71666 -14.28143 -13.86119 -13.61156 -13.31071 -12.62370 -12.39185 -12.09856 -11.86738 -11.78794 -11.37612 -11.14787 -11.05990 -10.84756 -10.63105 -10.44192 -10.27624 -10.26224 -10.06535 -9.82627 -9.51303 -9.34991 -8.97815 -8.45031 -7.84931 -5.90567 -4.05575 3.32957 3.40019 3.43221 4.46339 5.03154 5.24002 5.37835 5.41080 5.60448 5.72890 5.82877 5.89233 5.95338 5.99001 6.15106 6.18346 6.24568 6.33059 6.37953 6.51434 6.55006 6.70062 6.75740 6.79111 6.86886 6.95849 6.99202 7.01026 7.23858 7.37788 7.83248 8.17793 8.43209 8.67660 9.10195 9.64261 11.11942 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.030944 B = 0.010220 C = 0.009010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.643041 B = 2739.062126 C = 3106.952766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 C -0.144 4.144 4 C -0.100 4.100 5 C 0.065 3.935 6 H 0.049 0.951 7 C -0.149 4.149 8 C -0.142 4.142 9 C 0.226 3.774 10 C -0.148 4.148 11 C -0.522 4.522 12 H 0.059 0.941 13 C 0.079 3.921 14 N -0.860 5.860 15 Si 0.888 3.112 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 O -0.339 6.339 20 H 0.046 0.954 21 H 0.051 0.949 22 H 0.048 0.952 23 H 0.085 0.915 24 H 0.058 0.942 25 H 0.045 0.955 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.033 0.967 35 H 0.008 0.992 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.668 5.516 -5.489 9.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 C -0.201 4.201 4 C -0.138 4.138 5 C 0.006 3.994 6 H 0.066 0.934 7 C -0.187 4.187 8 C -0.180 4.180 9 C 0.188 3.812 10 C -0.206 4.206 11 C -0.560 4.560 12 H 0.078 0.922 13 C -0.126 4.126 14 N -0.497 5.497 15 Si 0.715 3.285 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 O -0.258 6.258 20 H 0.065 0.935 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.104 0.896 24 H 0.077 0.923 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.052 0.948 35 H 0.027 0.973 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.819 5.502 -5.102 8.918 hybrid contribution 0.278 -0.859 0.136 0.913 sum -4.541 4.644 -4.966 8.176 Atomic orbital electron populations 1.21833 0.96268 1.01262 1.00722 1.21059 0.94406 0.96010 1.00060 1.21844 1.01609 0.96215 1.00429 1.21585 0.95039 1.00368 0.96806 1.22944 0.93680 0.94425 0.88382 0.93353 1.23102 0.98195 0.99538 0.97832 1.23060 0.95461 1.00065 0.99406 1.19611 0.80676 0.93386 0.87536 1.22163 0.97856 0.95331 1.05238 1.21080 1.49881 0.92585 0.92428 0.92240 1.25015 0.93840 0.96688 0.97029 1.69966 1.46168 1.31053 1.02481 0.86686 0.77943 0.85360 0.78473 1.20682 1.21171 1.19902 1.89261 1.33112 1.62444 1.40980 0.93468 0.92940 0.93275 0.89646 0.92268 0.93631 0.93409 0.91721 0.92463 0.91708 0.92703 0.93178 0.91850 0.89263 0.94816 0.97272 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.19 37.16 0.34 -1.65 16 2 C -0.10 -1.62 2.88 -90.62 -0.26 -1.88 16 3 C -0.14 -2.16 8.96 37.16 0.33 -1.82 16 4 C -0.10 -1.74 4.46 -26.73 -0.12 -1.86 16 5 C 0.06 1.31 3.07 -25.68 -0.08 1.23 16 6 H 0.05 0.97 6.47 -51.93 -0.34 0.64 16 7 C -0.15 -2.84 6.59 -24.72 -0.16 -3.00 16 8 C -0.14 -3.07 6.27 -25.20 -0.16 -3.23 16 9 C 0.23 5.77 0.74 -91.20 -0.07 5.71 16 10 C -0.15 -3.69 8.38 37.16 0.31 -3.38 16 11 C -0.52 -14.67 8.26 -34.44 -0.28 -14.95 16 12 H 0.06 1.64 7.34 -52.49 -0.39 1.26 16 13 C 0.08 2.23 5.26 -17.82 -0.09 2.14 16 14 N -0.86 -24.98 10.94 55.43 0.61 -24.38 16 15 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 O -0.34 -8.74 9.64 -35.23 -0.34 -9.08 16 20 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.09 1.72 7.80 -51.93 -0.40 1.32 16 24 H 0.06 0.97 6.51 -51.93 -0.34 0.63 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 1.21 8.06 -51.93 -0.42 0.79 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 1.00 7.70 -51.93 -0.40 0.60 16 32 H 0.06 1.37 7.41 -51.93 -0.38 0.98 16 33 H 0.09 2.46 6.06 -51.93 -0.31 2.14 16 34 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 LS Contribution 282.57 15.07 4.26 4.26 Total: -1.00 -29.24 282.57 -7.08 -36.32 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -6.34 Total: -0.90 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: -0.24 Total: -22.70 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: 0.61 Total: -24.38 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.34 Total: -9.08 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.24 -7.08 -36.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306470380.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.012 kcal (2) G-P(sol) polarization free energy of solvation -29.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds