Wall clock time and date at job start Mon Mar 30 2020 02:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.46803 * 125.20466 * 89.99891 * 3 2 1 5 5 N 1.48069 * 106.14881 * 197.56682 * 4 3 2 6 6 C 1.46896 * 111.00263 * 91.90297 * 5 4 3 7 7 H 1.08995 * 109.47134 * 55.00422 * 6 5 4 8 8 C 1.53001 * 109.47526 * 294.99962 * 6 5 4 9 9 C 1.50705 * 109.46872 * 175.00039 * 6 5 4 10 10 H 1.07995 * 120.00143 * 0.02562 * 9 6 5 11 11 C 1.37878 * 119.99817 * 180.02562 * 9 6 5 12 12 N 1.31517 * 120.00121 * 359.97438 * 11 9 6 13 13 Si 1.86803 * 120.00225 * 180.02562 * 11 9 6 14 14 H 1.48506 * 109.46603 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46957 * 119.99709 * 13 11 9 16 16 H 1.48494 * 109.47043 * 240.00353 * 13 11 9 17 17 C 1.48242 * 103.15594 * 332.96181 * 5 4 3 18 18 C 1.34848 * 125.20567 * 269.69581 * 3 2 1 19 19 O 1.21282 * 125.74929 * 359.60761 * 18 3 2 20 20 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00146 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00128 * 1 2 3 23 23 H 1.08998 * 109.47533 * 119.99674 * 2 1 3 24 24 H 1.08996 * 109.47853 * 240.00016 * 2 1 3 25 25 H 1.09008 * 110.12027 * 316.73079 * 4 3 2 26 26 H 1.08997 * 110.12165 * 78.32917 * 4 3 2 27 27 H 1.09000 * 109.47414 * 179.97438 * 8 6 5 28 28 H 1.08995 * 109.47290 * 300.00364 * 8 6 5 29 29 H 1.09003 * 109.46588 * 59.99833 * 8 6 5 30 30 H 0.96998 * 119.99950 * 180.02562 * 12 11 9 31 31 H 1.08993 * 110.38207 * 145.16735 * 17 5 4 32 32 H 1.08998 * 110.37801 * 267.52864 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3005 2.1792 1.1995 5 7 2.3443 3.5907 0.7543 6 6 1.0239 4.2227 0.8772 7 1 0.6639 4.1160 1.9004 8 6 0.0429 3.5454 -0.0819 9 6 1.1335 5.6859 0.5332 10 1 2.0883 6.1042 0.2511 11 6 0.0146 6.4903 0.5786 12 7 -1.1483 5.9807 0.9217 13 14 0.1501 8.3038 0.1516 14 1 1.5566 8.6257 -0.2003 15 1 -0.7307 8.6072 -1.0048 16 1 -0.2676 9.1200 1.3197 17 6 2.7518 3.4837 -0.6670 18 6 2.2830 2.1123 -1.1018 19 8 2.1632 1.7349 -2.2482 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.5081 2.0427 1.9356 26 1 3.2611 1.8894 1.6253 27 1 -0.9369 4.0141 0.0096 28 1 0.4030 3.6520 -1.1051 29 1 -0.0362 2.4871 0.1669 30 1 -1.9354 6.5466 0.9533 31 1 2.2670 4.2589 -1.2603 32 1 3.8355 3.5571 -0.7576 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306572383.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:21 Heat of formation + Delta-G solvation = -32.618112 kcal Electronic energy + Delta-G solvation = -15041.588803 eV Core-core repulsion = 12616.028355 eV Total energy + Delta-G solvation = -2425.560448 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.93824 -38.34468 -36.35081 -34.72102 -32.20639 -29.87989 -28.99921 -27.37810 -25.21374 -23.89766 -21.58770 -20.68333 -18.39256 -17.94123 -17.43576 -16.55148 -16.35054 -15.94628 -15.10251 -14.94537 -14.41121 -14.07910 -14.00972 -13.74820 -13.46176 -13.06955 -12.89010 -12.83377 -12.61020 -12.44858 -12.18772 -12.05716 -11.90363 -11.25128 -10.91616 -10.52184 -9.72117 -9.43960 -8.13761 -6.24819 1.41856 1.44759 1.48942 1.55821 2.04235 2.41881 3.13524 3.16751 3.53721 4.00399 4.19234 4.29213 4.38447 4.46803 4.56886 4.64257 4.70257 4.79741 4.89175 4.92050 5.01902 5.16931 5.25772 5.42136 5.60365 5.72881 5.80907 6.12548 6.25863 6.45716 6.85820 7.11522 7.44164 8.92138 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.044975 B = 0.009630 C = 0.009109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.415498 B = 2906.830227 C = 3073.080370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.125 3.875 3 N -0.634 5.634 4 C 0.248 3.752 5 N -0.497 5.497 6 C 0.203 3.797 7 H 0.026 0.974 8 C -0.160 4.160 9 C -0.518 4.518 10 H 0.061 0.939 11 C 0.013 3.987 12 N -0.918 5.918 13 Si 0.958 3.042 14 H -0.265 1.265 15 H -0.286 1.286 16 H -0.279 1.279 17 C 0.014 3.986 18 C 0.498 3.502 19 O -0.578 6.578 20 H 0.094 0.906 21 H 0.026 0.974 22 H 0.054 0.946 23 H 0.116 0.884 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.117 0.883 27 H 0.059 0.941 28 H 0.014 0.986 29 H 0.041 0.959 30 H 0.261 0.739 31 H 0.090 0.910 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.293 -9.383 2.006 10.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.003 3.997 3 N -0.370 5.370 4 C 0.037 3.963 5 N -0.221 5.221 6 C 0.096 3.904 7 H 0.044 0.956 8 C -0.220 4.220 9 C -0.556 4.556 10 H 0.079 0.921 11 C -0.186 4.186 12 N -0.558 5.558 13 Si 0.784 3.216 14 H -0.189 1.189 15 H -0.212 1.212 16 H -0.205 1.205 17 C -0.117 4.117 18 C 0.286 3.714 19 O -0.458 6.458 20 H 0.113 0.887 21 H 0.045 0.955 22 H 0.073 0.927 23 H 0.134 0.866 24 H 0.093 0.907 25 H 0.100 0.900 26 H 0.135 0.865 27 H 0.077 0.923 28 H 0.033 0.967 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.391 -9.269 1.824 10.877 hybrid contribution -1.117 0.669 -0.770 1.513 sum 4.274 -8.600 1.053 9.661 Atomic orbital electron populations 1.22161 0.96144 1.03136 1.00915 1.21493 0.94074 0.79773 1.04320 1.49156 1.64801 1.15045 1.08017 1.23373 1.02730 0.83046 0.87167 1.65782 1.29136 1.12615 1.14529 1.19419 0.83188 0.93152 0.94656 0.95600 1.22408 1.03342 0.98227 0.97987 1.21357 0.94745 0.93794 1.45698 0.92088 1.25669 0.95003 1.02744 0.95198 1.70004 0.99812 1.36832 1.49172 0.85497 0.78302 0.80206 0.77594 1.18948 1.21239 1.20484 1.22989 1.03502 0.93908 0.91315 1.21790 0.75673 0.89295 0.84619 1.90622 1.56244 1.77820 1.21116 0.88693 0.95522 0.92732 0.86604 0.90737 0.90046 0.86519 0.92254 0.96700 0.93986 0.92959 0.89160 0.85422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.23 8.98 71.98 0.65 -3.58 16 2 C 0.12 3.04 6.76 86.38 0.58 3.63 16 3 N -0.63 -19.97 1.96 -829.13 -1.62 -21.59 16 4 C 0.25 7.51 6.68 170.24 1.14 8.65 16 5 N -0.50 -19.42 5.53 -883.53 -4.89 -24.31 16 6 C 0.20 9.72 2.21 44.17 0.10 9.82 16 7 H 0.03 1.35 7.96 -2.39 -0.02 1.33 16 8 C -0.16 -7.75 7.52 71.98 0.54 -7.21 16 9 C -0.52 -27.49 7.78 25.60 0.20 -27.29 16 10 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 11 C 0.01 0.69 5.30 84.65 0.45 1.14 16 12 N -0.92 -51.77 11.32 21.45 0.24 -51.53 16 13 Si 0.96 43.14 29.54 68.60 2.03 45.17 16 14 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 15 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 16 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 17 C 0.01 0.53 6.04 85.49 0.52 1.05 16 18 C 0.50 19.30 6.15 87.84 0.54 19.84 16 19 O -0.58 -26.04 17.73 -3.04 -0.05 -26.10 16 20 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 21 H 0.03 0.85 8.00 -2.39 -0.02 0.83 16 22 H 0.05 1.46 7.62 -2.38 -0.02 1.44 16 23 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.07 1.88 8.01 -2.39 -0.02 1.86 16 25 H 0.08 2.42 7.68 -2.38 -0.02 2.40 16 26 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 28 H 0.01 0.72 5.82 -2.39 -0.01 0.70 16 29 H 0.04 1.80 4.34 -2.39 -0.01 1.79 16 30 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 31 H 0.09 3.96 6.26 -2.39 -0.01 3.95 16 32 H 0.13 4.10 8.14 -2.39 -0.02 4.08 16 Total: -1.00 -63.90 255.28 1.51 -62.39 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 1.10 Total: 9.93 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 4.71 Total: 6.05 kcal Atomic # 7 Polarization: -91.16 SS G_CDS: -6.27 Total: -97.43 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.05 Total: -26.10 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -63.90 1.51 -62.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306572383.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.768 kcal (2) G-P(sol) polarization free energy of solvation -63.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds