Wall clock time and date at job start Mon Mar 30 2020 02:38:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46497 * 109.47188 * 2 1
4 4 C 1.46810 * 125.20325 * 90.00149 * 3 2 1
5 5 N 1.48076 * 106.14659 * 197.56263 * 4 3 2
6 6 C 1.46900 * 110.99900 * 91.91101 * 5 4 3
7 7 H 1.09007 * 109.46953 * 309.99860 * 6 5 4
8 8 C 1.52997 * 109.47476 * 69.99409 * 6 5 4
9 9 C 1.50696 * 109.47010 * 189.99858 * 6 5 4
10 10 H 1.07993 * 120.00030 * 359.97438 * 9 6 5
11 11 C 1.37879 * 119.99912 * 179.97438 * 9 6 5
12 12 N 1.31512 * 120.00304 * 0.02562 * 11 9 6
13 13 Si 1.86803 * 119.99854 * 179.97438 * 11 9 6
14 14 H 1.48503 * 109.46961 * 90.00610 * 13 11 9
15 15 H 1.48505 * 109.46935 * 210.00285 * 13 11 9
16 16 H 1.48495 * 109.47316 * 330.00278 * 13 11 9
17 17 C 1.48232 * 103.15998 * 332.96245 * 5 4 3
18 18 C 1.34858 * 125.21073 * 269.69735 * 3 2 1
19 19 O 1.21276 * 125.74332 * 359.61579 * 18 3 2
20 20 H 1.09002 * 109.47153 * 299.99573 * 1 2 3
21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3
22 22 H 1.09004 * 109.47261 * 59.99745 * 1 2 3
23 23 H 1.08996 * 109.47853 * 120.00399 * 2 1 3
24 24 H 1.09002 * 109.47153 * 240.00427 * 2 1 3
25 25 H 1.09001 * 110.11621 * 316.73136 * 4 3 2
26 26 H 1.08994 * 110.11655 * 78.39575 * 4 3 2
27 27 H 1.08998 * 109.47239 * 300.00433 * 8 6 5
28 28 H 1.09000 * 109.46952 * 60.00001 * 8 6 5
29 29 H 1.09003 * 109.47364 * 180.02562 * 8 6 5
30 30 H 0.96994 * 120.00379 * 179.97438 * 12 11 9
31 31 H 1.08995 * 110.38148 * 145.16393 * 17 5 4
32 32 H 1.08997 * 110.38074 * 267.52391 * 17 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.3005 2.1791 1.1996
5 7 2.3443 3.5906 0.7544
6 6 1.0239 4.2227 0.8774
7 1 0.2721 3.5878 0.4086
8 6 0.6833 4.4085 2.3574
9 6 1.0443 5.5657 0.1941
10 1 1.9478 5.9149 -0.2834
11 6 -0.0906 6.3485 0.1786
12 7 -1.1907 5.9235 0.7605
13 14 -0.0651 8.0136 -0.6679
14 1 -0.4582 7.8516 -2.0907
15 1 -1.0205 8.9274 0.0086
16 1 1.3033 8.5854 -0.5943
17 6 2.7518 3.4837 -0.6668
18 6 2.2830 2.1123 -1.1018
19 8 2.1630 1.7350 -2.2481
20 1 -0.3633 0.5138 0.8900
21 1 -0.3633 -1.0277 -0.0005
22 1 -0.3634 0.5139 -0.8900
23 1 1.8934 -0.5139 0.8899
24 1 1.8933 -0.5138 -0.8900
25 1 1.5081 2.0426 1.9356
26 1 3.2616 1.8900 1.6246
27 1 0.6687 3.4372 2.8516
28 1 1.4352 5.0434 2.8263
29 1 -0.2966 4.8771 2.4487
30 1 -1.9890 6.4743 0.7499
31 1 2.2669 4.2590 -1.2601
32 1 3.8355 3.5572 -0.7576
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000306572384.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:38:25
Heat of formation + Delta-G solvation = -16.920326 kcal
Electronic energy + Delta-G solvation = -14836.812782 eV
Core-core repulsion = 12411.933041 eV
Total energy + Delta-G solvation = -2424.879741 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 212.127 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.15542 -36.67674 -34.85751 -32.96831 -30.62481 -28.82657 -27.15784 -25.08980
-23.67718 -22.56339 -19.98389 -19.04267 -16.61735 -16.38145 -15.55232 -15.05175
-14.80134 -13.94853 -13.72913 -13.57632 -13.08301 -12.78465 -12.47289 -12.12144
-11.77117 -11.54791 -11.16238 -11.00112 -10.88840 -10.76103 -10.45203 -10.23961
-10.07669 -9.60516 -9.00658 -8.55898 -8.37814 -7.75495 -6.11491 -4.17456
3.03405 3.27530 3.34107 3.36754 3.38424 4.32981 4.71304 4.95399
5.21456 5.26057 5.36561 5.51891 5.64118 5.75347 5.90573 5.95859
6.07653 6.24557 6.37899 6.67387 6.74477 6.84670 6.94627 7.14939
7.31512 7.57646 7.68711 7.90983 8.12276 8.31255 8.62099 8.86755
9.48166 10.95333
Molecular weight = 212.13amu
Principal moments of inertia in cm(-1)
A = 0.036456 B = 0.009904 C = 0.009321
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 767.855017 B = 2826.581383 C = 3003.114752
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.130 3.870
3 N -0.644 5.644
4 C 0.246 3.754
5 N -0.494 5.494
6 C 0.196 3.804
7 H 0.006 0.994
8 C -0.130 4.130
9 C -0.514 4.514
10 H 0.066 0.934
11 C 0.063 3.937
12 N -0.889 5.889
13 Si 0.898 3.102
14 H -0.280 1.280
15 H -0.286 1.286
16 H -0.272 1.272
17 C 0.008 3.992
18 C 0.499 3.501
19 O -0.542 6.542
20 H 0.059 0.941
21 H 0.062 0.938
22 H 0.059 0.941
23 H 0.074 0.926
24 H 0.075 0.925
25 H 0.079 0.921
26 H 0.078 0.922
27 H 0.007 0.993
28 H 0.038 0.962
29 H 0.088 0.912
30 H 0.262 0.738
31 H 0.125 0.875
32 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.434 -7.921 2.167 9.333
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C 0.008 3.992
3 N -0.382 5.382
4 C 0.033 3.967
5 N -0.219 5.219
6 C 0.090 3.910
7 H 0.024 0.976
8 C -0.188 4.188
9 C -0.552 4.552
10 H 0.084 0.916
11 C -0.139 4.139
12 N -0.528 5.528
13 Si 0.726 3.274
14 H -0.206 1.206
15 H -0.212 1.212
16 H -0.197 1.197
17 C -0.123 4.123
18 C 0.286 3.714
19 O -0.419 6.419
20 H 0.078 0.922
21 H 0.081 0.919
22 H 0.078 0.922
23 H 0.093 0.907
24 H 0.094 0.906
25 H 0.097 0.903
26 H 0.096 0.904
27 H 0.026 0.974
28 H 0.057 0.943
29 H 0.107 0.893
30 H 0.072 0.928
31 H 0.143 0.857
32 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges 4.506 -7.781 1.957 9.202
hybrid contribution -0.784 0.379 -0.716 1.128
sum 3.722 -7.402 1.241 8.377
Atomic orbital electron populations
1.22162 0.95943 1.01677 1.03032 1.21173 0.94292 0.81435 1.02316
1.49084 1.65997 1.14054 1.09016 1.23234 1.00616 0.85269 0.87534
1.65736 1.31957 1.10047 1.14163 1.19575 0.82636 0.94205 0.94569
0.97592 1.21802 1.03577 0.97448 0.95979 1.21069 0.97506 1.01664
1.35008 0.91581 1.24919 0.95303 0.98395 0.95313 1.69875 1.01622
1.37821 1.43440 0.86482 0.78057 0.83364 0.79494 1.20616 1.21158
1.19657 1.23115 1.02274 0.94748 0.92176 1.21907 0.75866 0.89080
0.84508 1.90638 1.54274 1.77212 1.19746 0.92181 0.91860 0.92230
0.90733 0.90641 0.90291 0.90429 0.97393 0.94290 0.89348 0.92777
0.85694 0.88126
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.41 10.24 37.16 0.38 -2.03 16
2 C 0.13 1.84 6.76 -4.04 -0.03 1.81 16
3 N -0.64 -11.23 2.97 -176.01 -0.52 -11.75 16
4 C 0.25 4.17 7.01 -61.68 -0.43 3.74 16
5 N -0.49 -10.09 5.36 -230.61 -1.24 -11.33 16
6 C 0.20 4.73 1.83 -68.87 -0.13 4.61 16
7 H 0.01 0.17 8.08 -51.93 -0.42 -0.25 16
8 C -0.13 -2.99 9.01 37.16 0.33 -2.66 16
9 C -0.51 -13.58 7.47 -34.44 -0.26 -13.84 16
10 H 0.07 1.72 6.85 -52.49 -0.36 1.36 16
11 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16
12 N -0.89 -24.73 11.32 55.43 0.63 -24.10 16
13 Si 0.90 20.94 29.54 -169.99 -5.02 15.91 16
14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
15 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16
16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16
17 C 0.01 0.16 6.32 -3.94 -0.02 0.13 16
18 C 0.50 10.17 8.13 -10.65 -0.09 10.08 16
19 O -0.54 -12.49 17.73 5.56 0.10 -12.39 16
20 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16
21 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
22 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
23 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16
24 H 0.08 1.07 8.01 -51.93 -0.42 0.66 16
25 H 0.08 1.33 6.17 -51.93 -0.32 1.01 16
26 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16
27 H 0.01 0.15 6.53 -51.93 -0.34 -0.19 16
28 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16
29 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16
30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16
31 H 0.13 2.74 6.02 -51.93 -0.31 2.43 16
32 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16
LS Contribution 263.35 15.07 3.97 3.97
Total: -1.00 -29.66 263.35 -7.00 -36.65
By element:
Atomic # 1 Polarization: 4.17 SS G_CDS: -4.58 Total: -0.41 kcal
Atomic # 6 Polarization: 3.78 SS G_CDS: -0.33 Total: 3.45 kcal
Atomic # 7 Polarization: -46.05 SS G_CDS: -1.13 Total: -47.18 kcal
Atomic # 8 Polarization: -12.49 SS G_CDS: 0.10 Total: -12.39 kcal
Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal
Total LS contribution 3.97 Total: 3.97 kcal
Total: -29.66 -7.00 -36.65 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000306572384.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.732 kcal
(2) G-P(sol) polarization free energy of solvation -29.656 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.924 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.653 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.920 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds