Wall clock time and date at job start Mon Mar 30 2020 02:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 C 1.46810 * 125.20325 * 90.00149 * 3 2 1 5 5 N 1.48076 * 106.14659 * 197.56263 * 4 3 2 6 6 C 1.46900 * 110.99900 * 91.91101 * 5 4 3 7 7 H 1.09007 * 109.46953 * 309.99860 * 6 5 4 8 8 C 1.52997 * 109.47476 * 69.99409 * 6 5 4 9 9 C 1.50696 * 109.47010 * 189.99858 * 6 5 4 10 10 H 1.07993 * 120.00030 * 359.97438 * 9 6 5 11 11 C 1.37879 * 119.99912 * 179.97438 * 9 6 5 12 12 N 1.31512 * 120.00304 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 119.99854 * 179.97438 * 11 9 6 14 14 H 1.48503 * 109.46961 * 90.00610 * 13 11 9 15 15 H 1.48505 * 109.46935 * 210.00285 * 13 11 9 16 16 H 1.48495 * 109.47316 * 330.00278 * 13 11 9 17 17 C 1.48232 * 103.15998 * 332.96245 * 5 4 3 18 18 C 1.34858 * 125.21073 * 269.69735 * 3 2 1 19 19 O 1.21276 * 125.74332 * 359.61579 * 18 3 2 20 20 H 1.09002 * 109.47153 * 299.99573 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99745 * 1 2 3 23 23 H 1.08996 * 109.47853 * 120.00399 * 2 1 3 24 24 H 1.09002 * 109.47153 * 240.00427 * 2 1 3 25 25 H 1.09001 * 110.11621 * 316.73136 * 4 3 2 26 26 H 1.08994 * 110.11655 * 78.39575 * 4 3 2 27 27 H 1.08998 * 109.47239 * 300.00433 * 8 6 5 28 28 H 1.09000 * 109.46952 * 60.00001 * 8 6 5 29 29 H 1.09003 * 109.47364 * 180.02562 * 8 6 5 30 30 H 0.96994 * 120.00379 * 179.97438 * 12 11 9 31 31 H 1.08995 * 110.38148 * 145.16393 * 17 5 4 32 32 H 1.08997 * 110.38074 * 267.52391 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3005 2.1791 1.1996 5 7 2.3443 3.5906 0.7544 6 6 1.0239 4.2227 0.8774 7 1 0.2721 3.5878 0.4086 8 6 0.6833 4.4085 2.3574 9 6 1.0443 5.5657 0.1941 10 1 1.9478 5.9149 -0.2834 11 6 -0.0906 6.3485 0.1786 12 7 -1.1907 5.9235 0.7605 13 14 -0.0651 8.0136 -0.6679 14 1 -0.4582 7.8516 -2.0907 15 1 -1.0205 8.9274 0.0086 16 1 1.3033 8.5854 -0.5943 17 6 2.7518 3.4837 -0.6668 18 6 2.2830 2.1123 -1.1018 19 8 2.1630 1.7350 -2.2481 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.5081 2.0426 1.9356 26 1 3.2616 1.8900 1.6246 27 1 0.6687 3.4372 2.8516 28 1 1.4352 5.0434 2.8263 29 1 -0.2966 4.8771 2.4487 30 1 -1.9890 6.4743 0.7499 31 1 2.2669 4.2590 -1.2601 32 1 3.8355 3.5572 -0.7576 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306572384.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:25 Heat of formation + Delta-G solvation = -16.920326 kcal Electronic energy + Delta-G solvation = -14836.812782 eV Core-core repulsion = 12411.933041 eV Total energy + Delta-G solvation = -2424.879741 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.15542 -36.67674 -34.85751 -32.96831 -30.62481 -28.82657 -27.15784 -25.08980 -23.67718 -22.56339 -19.98389 -19.04267 -16.61735 -16.38145 -15.55232 -15.05175 -14.80134 -13.94853 -13.72913 -13.57632 -13.08301 -12.78465 -12.47289 -12.12144 -11.77117 -11.54791 -11.16238 -11.00112 -10.88840 -10.76103 -10.45203 -10.23961 -10.07669 -9.60516 -9.00658 -8.55898 -8.37814 -7.75495 -6.11491 -4.17456 3.03405 3.27530 3.34107 3.36754 3.38424 4.32981 4.71304 4.95399 5.21456 5.26057 5.36561 5.51891 5.64118 5.75347 5.90573 5.95859 6.07653 6.24557 6.37899 6.67387 6.74477 6.84670 6.94627 7.14939 7.31512 7.57646 7.68711 7.90983 8.12276 8.31255 8.62099 8.86755 9.48166 10.95333 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.036456 B = 0.009904 C = 0.009321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.855017 B = 2826.581383 C = 3003.114752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.130 3.870 3 N -0.644 5.644 4 C 0.246 3.754 5 N -0.494 5.494 6 C 0.196 3.804 7 H 0.006 0.994 8 C -0.130 4.130 9 C -0.514 4.514 10 H 0.066 0.934 11 C 0.063 3.937 12 N -0.889 5.889 13 Si 0.898 3.102 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.272 1.272 17 C 0.008 3.992 18 C 0.499 3.501 19 O -0.542 6.542 20 H 0.059 0.941 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.007 0.993 28 H 0.038 0.962 29 H 0.088 0.912 30 H 0.262 0.738 31 H 0.125 0.875 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.434 -7.921 2.167 9.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.008 3.992 3 N -0.382 5.382 4 C 0.033 3.967 5 N -0.219 5.219 6 C 0.090 3.910 7 H 0.024 0.976 8 C -0.188 4.188 9 C -0.552 4.552 10 H 0.084 0.916 11 C -0.139 4.139 12 N -0.528 5.528 13 Si 0.726 3.274 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.197 1.197 17 C -0.123 4.123 18 C 0.286 3.714 19 O -0.419 6.419 20 H 0.078 0.922 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.093 0.907 24 H 0.094 0.906 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.026 0.974 28 H 0.057 0.943 29 H 0.107 0.893 30 H 0.072 0.928 31 H 0.143 0.857 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.506 -7.781 1.957 9.202 hybrid contribution -0.784 0.379 -0.716 1.128 sum 3.722 -7.402 1.241 8.377 Atomic orbital electron populations 1.22162 0.95943 1.01677 1.03032 1.21173 0.94292 0.81435 1.02316 1.49084 1.65997 1.14054 1.09016 1.23234 1.00616 0.85269 0.87534 1.65736 1.31957 1.10047 1.14163 1.19575 0.82636 0.94205 0.94569 0.97592 1.21802 1.03577 0.97448 0.95979 1.21069 0.97506 1.01664 1.35008 0.91581 1.24919 0.95303 0.98395 0.95313 1.69875 1.01622 1.37821 1.43440 0.86482 0.78057 0.83364 0.79494 1.20616 1.21158 1.19657 1.23115 1.02274 0.94748 0.92176 1.21907 0.75866 0.89080 0.84508 1.90638 1.54274 1.77212 1.19746 0.92181 0.91860 0.92230 0.90733 0.90641 0.90291 0.90429 0.97393 0.94290 0.89348 0.92777 0.85694 0.88126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 10.24 37.16 0.38 -2.03 16 2 C 0.13 1.84 6.76 -4.04 -0.03 1.81 16 3 N -0.64 -11.23 2.97 -176.01 -0.52 -11.75 16 4 C 0.25 4.17 7.01 -61.68 -0.43 3.74 16 5 N -0.49 -10.09 5.36 -230.61 -1.24 -11.33 16 6 C 0.20 4.73 1.83 -68.87 -0.13 4.61 16 7 H 0.01 0.17 8.08 -51.93 -0.42 -0.25 16 8 C -0.13 -2.99 9.01 37.16 0.33 -2.66 16 9 C -0.51 -13.58 7.47 -34.44 -0.26 -13.84 16 10 H 0.07 1.72 6.85 -52.49 -0.36 1.36 16 11 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 12 N -0.89 -24.73 11.32 55.43 0.63 -24.10 16 13 Si 0.90 20.94 29.54 -169.99 -5.02 15.91 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 C 0.01 0.16 6.32 -3.94 -0.02 0.13 16 18 C 0.50 10.17 8.13 -10.65 -0.09 10.08 16 19 O -0.54 -12.49 17.73 5.56 0.10 -12.39 16 20 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.08 1.07 8.01 -51.93 -0.42 0.66 16 25 H 0.08 1.33 6.17 -51.93 -0.32 1.01 16 26 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.01 0.15 6.53 -51.93 -0.34 -0.19 16 28 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.13 2.74 6.02 -51.93 -0.31 2.43 16 32 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 LS Contribution 263.35 15.07 3.97 3.97 Total: -1.00 -29.66 263.35 -7.00 -36.65 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -4.58 Total: -0.41 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -0.33 Total: 3.45 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: -1.13 Total: -47.18 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.10 Total: -12.39 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.66 -7.00 -36.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306572384.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.732 kcal (2) G-P(sol) polarization free energy of solvation -29.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds