Wall clock time and date at job start Mon Mar 30 2020 02:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 C 1.46810 * 125.20325 * 90.00149 * 3 2 1 5 5 N 1.48076 * 106.14659 * 197.56263 * 4 3 2 6 6 C 1.46900 * 110.99900 * 91.91101 * 5 4 3 7 7 H 1.09007 * 109.46953 * 309.99860 * 6 5 4 8 8 C 1.52997 * 109.47476 * 69.99409 * 6 5 4 9 9 C 1.50696 * 109.47010 * 189.99858 * 6 5 4 10 10 H 1.07993 * 120.00030 * 359.97438 * 9 6 5 11 11 C 1.37879 * 119.99912 * 179.97438 * 9 6 5 12 12 N 1.31512 * 120.00304 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 119.99854 * 179.97438 * 11 9 6 14 14 H 1.48503 * 109.46961 * 90.00610 * 13 11 9 15 15 H 1.48505 * 109.46935 * 210.00285 * 13 11 9 16 16 H 1.48495 * 109.47316 * 330.00278 * 13 11 9 17 17 C 1.48232 * 103.15998 * 332.96245 * 5 4 3 18 18 C 1.34858 * 125.21073 * 269.69735 * 3 2 1 19 19 O 1.21276 * 125.74332 * 359.61579 * 18 3 2 20 20 H 1.09002 * 109.47153 * 299.99573 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99745 * 1 2 3 23 23 H 1.08996 * 109.47853 * 120.00399 * 2 1 3 24 24 H 1.09002 * 109.47153 * 240.00427 * 2 1 3 25 25 H 1.09001 * 110.11621 * 316.73136 * 4 3 2 26 26 H 1.08994 * 110.11655 * 78.39575 * 4 3 2 27 27 H 1.08998 * 109.47239 * 300.00433 * 8 6 5 28 28 H 1.09000 * 109.46952 * 60.00001 * 8 6 5 29 29 H 1.09003 * 109.47364 * 180.02562 * 8 6 5 30 30 H 0.96994 * 120.00379 * 179.97438 * 12 11 9 31 31 H 1.08995 * 110.38148 * 145.16393 * 17 5 4 32 32 H 1.08997 * 110.38074 * 267.52391 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3005 2.1791 1.1996 5 7 2.3443 3.5906 0.7544 6 6 1.0239 4.2227 0.8774 7 1 0.2721 3.5878 0.4086 8 6 0.6833 4.4085 2.3574 9 6 1.0443 5.5657 0.1941 10 1 1.9478 5.9149 -0.2834 11 6 -0.0906 6.3485 0.1786 12 7 -1.1907 5.9235 0.7605 13 14 -0.0651 8.0136 -0.6679 14 1 -0.4582 7.8516 -2.0907 15 1 -1.0205 8.9274 0.0086 16 1 1.3033 8.5854 -0.5943 17 6 2.7518 3.4837 -0.6668 18 6 2.2830 2.1123 -1.1018 19 8 2.1630 1.7350 -2.2481 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.5081 2.0426 1.9356 26 1 3.2616 1.8900 1.6246 27 1 0.6687 3.4372 2.8516 28 1 1.4352 5.0434 2.8263 29 1 -0.2966 4.8771 2.4487 30 1 -1.9890 6.4743 0.7499 31 1 2.2669 4.2590 -1.2601 32 1 3.8355 3.5572 -0.7576 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306572384.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:25 Heat of formation + Delta-G solvation = -37.578174 kcal Electronic energy + Delta-G solvation = -14837.708573 eV Core-core repulsion = 12411.933041 eV Total energy + Delta-G solvation = -2425.775532 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.70020 -38.36504 -36.41318 -34.73401 -32.30605 -30.36051 -28.80639 -27.00017 -25.16141 -23.97431 -21.76897 -20.56581 -18.46068 -17.95368 -17.17800 -16.63459 -16.50450 -15.56923 -15.49681 -14.96161 -14.73842 -14.18914 -14.04503 -13.72837 -13.11442 -13.03212 -12.95379 -12.76337 -12.63302 -12.30308 -12.12318 -12.07603 -11.93569 -11.27096 -10.91966 -10.56980 -9.81203 -9.45462 -8.15862 -6.27548 1.41668 1.43419 1.45145 1.53239 2.01913 2.40099 3.08519 3.17281 3.52208 3.98446 4.16787 4.27700 4.41530 4.44686 4.54955 4.63458 4.77292 4.83587 4.89738 4.99173 5.07569 5.20947 5.36128 5.38958 5.55332 5.67454 5.93466 6.13649 6.21207 6.43524 6.83465 7.07947 7.41277 8.90093 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.036456 B = 0.009904 C = 0.009321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.855017 B = 2826.581383 C = 3003.114752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.124 3.876 3 N -0.637 5.637 4 C 0.245 3.755 5 N -0.495 5.495 6 C 0.204 3.796 7 H -0.033 1.033 8 C -0.119 4.119 9 C -0.527 4.527 10 H 0.064 0.936 11 C 0.015 3.985 12 N -0.916 5.916 13 Si 0.957 3.043 14 H -0.282 1.282 15 H -0.282 1.282 16 H -0.264 1.264 17 C 0.010 3.990 18 C 0.490 3.510 19 O -0.578 6.578 20 H 0.051 0.949 21 H 0.097 0.903 22 H 0.022 0.978 23 H 0.118 0.882 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.118 0.882 27 H 0.036 0.964 28 H 0.039 0.961 29 H 0.060 0.940 30 H 0.262 0.738 31 H 0.097 0.903 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.591 -8.707 3.135 10.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.003 3.997 3 N -0.373 5.373 4 C 0.034 3.966 5 N -0.220 5.220 6 C 0.097 3.903 7 H -0.016 1.016 8 C -0.177 4.177 9 C -0.566 4.566 10 H 0.082 0.918 11 C -0.185 4.185 12 N -0.555 5.555 13 Si 0.782 3.218 14 H -0.208 1.208 15 H -0.208 1.208 16 H -0.188 1.188 17 C -0.121 4.121 18 C 0.278 3.722 19 O -0.458 6.458 20 H 0.071 0.929 21 H 0.116 0.884 22 H 0.041 0.959 23 H 0.136 0.864 24 H 0.093 0.907 25 H 0.102 0.898 26 H 0.136 0.864 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.116 0.884 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.673 -8.588 2.960 10.710 hybrid contribution -1.138 0.540 -0.995 1.605 sum 4.536 -8.049 1.965 9.445 Atomic orbital electron populations 1.22128 0.96184 1.03239 1.00746 1.21510 0.94036 0.79777 1.04415 1.49217 1.64764 1.15157 1.08189 1.23468 1.02902 0.83166 0.87097 1.65697 1.29323 1.12481 1.14450 1.19324 0.83502 0.92877 0.94592 1.01584 1.21607 1.01870 0.98762 0.95468 1.21407 0.97430 1.02749 1.34979 0.91777 1.25668 0.95129 1.01634 0.96031 1.69997 1.02060 1.38946 1.44546 0.85567 0.78331 0.79652 0.78204 1.20803 1.20757 1.18807 1.23104 1.03749 0.93842 0.91422 1.22015 0.75957 0.89608 0.84655 1.90611 1.56129 1.77903 1.21159 0.92943 0.88421 0.95909 0.86437 0.90659 0.89792 0.86441 0.94531 0.94160 0.92142 0.92864 0.88449 0.85096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.43 10.24 71.98 0.74 -3.69 16 2 C 0.12 3.16 6.76 86.38 0.58 3.75 16 3 N -0.64 -21.00 2.97 -829.12 -2.46 -23.46 16 4 C 0.24 7.60 7.01 170.23 1.19 8.79 16 5 N -0.50 -19.50 5.36 -883.53 -4.74 -24.24 16 6 C 0.20 9.85 1.83 44.17 0.08 9.93 16 7 H -0.03 -1.86 8.08 -2.38 -0.02 -1.88 16 8 C -0.12 -5.39 9.01 71.98 0.65 -4.75 16 9 C -0.53 -28.08 7.47 25.60 0.19 -27.89 16 10 H 0.06 3.36 6.85 -2.91 -0.02 3.34 16 11 C 0.01 0.80 5.30 84.66 0.45 1.25 16 12 N -0.92 -51.79 11.32 21.45 0.24 -51.55 16 13 Si 0.96 43.19 29.54 68.60 2.03 45.22 16 14 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 15 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 16 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 17 C 0.01 0.38 6.32 85.50 0.54 0.92 16 18 C 0.49 19.73 8.13 87.84 0.71 20.44 16 19 O -0.58 -26.89 17.73 -3.02 -0.05 -26.94 16 20 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 21 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 22 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 23 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.07 1.97 8.01 -2.39 -0.02 1.95 16 25 H 0.08 2.56 6.17 -2.39 -0.01 2.55 16 26 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 27 H 0.04 1.40 6.53 -2.39 -0.02 1.38 16 28 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 30 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 31 H 0.10 4.36 6.02 -2.39 -0.01 4.34 16 32 H 0.13 4.23 8.14 -2.39 -0.02 4.21 16 Total: -1.00 -64.91 263.35 1.25 -63.66 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 1.10 Total: 8.55 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 5.14 Total: 8.77 kcal Atomic # 7 Polarization: -92.30 SS G_CDS: -6.96 Total: -99.26 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.05 Total: -26.94 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -64.91 1.25 -63.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306572384.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.082 kcal (2) G-P(sol) polarization free energy of solvation -64.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds