Wall clock time and date at job start Mon Mar 30 2020 02:38:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46497 * 109.47188 * 2 1
4 4 C 1.46810 * 125.20325 * 90.00149 * 3 2 1
5 5 N 1.48076 * 106.14659 * 197.56263 * 4 3 2
6 6 C 1.46900 * 110.99900 * 91.91101 * 5 4 3
7 7 H 1.09007 * 109.46953 * 309.99860 * 6 5 4
8 8 C 1.52997 * 109.47476 * 69.99409 * 6 5 4
9 9 C 1.50696 * 109.47010 * 189.99858 * 6 5 4
10 10 H 1.07993 * 120.00030 * 359.97438 * 9 6 5
11 11 C 1.37879 * 119.99912 * 179.97438 * 9 6 5
12 12 N 1.31512 * 120.00304 * 0.02562 * 11 9 6
13 13 Si 1.86803 * 119.99854 * 179.97438 * 11 9 6
14 14 H 1.48503 * 109.46961 * 90.00610 * 13 11 9
15 15 H 1.48505 * 109.46935 * 210.00285 * 13 11 9
16 16 H 1.48495 * 109.47316 * 330.00278 * 13 11 9
17 17 C 1.48232 * 103.15998 * 332.96245 * 5 4 3
18 18 C 1.34858 * 125.21073 * 269.69735 * 3 2 1
19 19 O 1.21276 * 125.74332 * 359.61579 * 18 3 2
20 20 H 1.09002 * 109.47153 * 299.99573 * 1 2 3
21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3
22 22 H 1.09004 * 109.47261 * 59.99745 * 1 2 3
23 23 H 1.08996 * 109.47853 * 120.00399 * 2 1 3
24 24 H 1.09002 * 109.47153 * 240.00427 * 2 1 3
25 25 H 1.09001 * 110.11621 * 316.73136 * 4 3 2
26 26 H 1.08994 * 110.11655 * 78.39575 * 4 3 2
27 27 H 1.08998 * 109.47239 * 300.00433 * 8 6 5
28 28 H 1.09000 * 109.46952 * 60.00001 * 8 6 5
29 29 H 1.09003 * 109.47364 * 180.02562 * 8 6 5
30 30 H 0.96994 * 120.00379 * 179.97438 * 12 11 9
31 31 H 1.08995 * 110.38148 * 145.16393 * 17 5 4
32 32 H 1.08997 * 110.38074 * 267.52391 * 17 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.3005 2.1791 1.1996
5 7 2.3443 3.5906 0.7544
6 6 1.0239 4.2227 0.8774
7 1 0.2721 3.5878 0.4086
8 6 0.6833 4.4085 2.3574
9 6 1.0443 5.5657 0.1941
10 1 1.9478 5.9149 -0.2834
11 6 -0.0906 6.3485 0.1786
12 7 -1.1907 5.9235 0.7605
13 14 -0.0651 8.0136 -0.6679
14 1 -0.4582 7.8516 -2.0907
15 1 -1.0205 8.9274 0.0086
16 1 1.3033 8.5854 -0.5943
17 6 2.7518 3.4837 -0.6668
18 6 2.2830 2.1123 -1.1018
19 8 2.1630 1.7350 -2.2481
20 1 -0.3633 0.5138 0.8900
21 1 -0.3633 -1.0277 -0.0005
22 1 -0.3634 0.5139 -0.8900
23 1 1.8934 -0.5139 0.8899
24 1 1.8933 -0.5138 -0.8900
25 1 1.5081 2.0426 1.9356
26 1 3.2616 1.8900 1.6246
27 1 0.6687 3.4372 2.8516
28 1 1.4352 5.0434 2.8263
29 1 -0.2966 4.8771 2.4487
30 1 -1.9890 6.4743 0.7499
31 1 2.2669 4.2590 -1.2601
32 1 3.8355 3.5572 -0.7576
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000306572384.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:38:25
Heat of formation + Delta-G solvation = -37.578174 kcal
Electronic energy + Delta-G solvation = -14837.708573 eV
Core-core repulsion = 12411.933041 eV
Total energy + Delta-G solvation = -2425.775532 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 212.127 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-41.70020 -38.36504 -36.41318 -34.73401 -32.30605 -30.36051 -28.80639 -27.00017
-25.16141 -23.97431 -21.76897 -20.56581 -18.46068 -17.95368 -17.17800 -16.63459
-16.50450 -15.56923 -15.49681 -14.96161 -14.73842 -14.18914 -14.04503 -13.72837
-13.11442 -13.03212 -12.95379 -12.76337 -12.63302 -12.30308 -12.12318 -12.07603
-11.93569 -11.27096 -10.91966 -10.56980 -9.81203 -9.45462 -8.15862 -6.27548
1.41668 1.43419 1.45145 1.53239 2.01913 2.40099 3.08519 3.17281
3.52208 3.98446 4.16787 4.27700 4.41530 4.44686 4.54955 4.63458
4.77292 4.83587 4.89738 4.99173 5.07569 5.20947 5.36128 5.38958
5.55332 5.67454 5.93466 6.13649 6.21207 6.43524 6.83465 7.07947
7.41277 8.90093
Molecular weight = 212.13amu
Principal moments of inertia in cm(-1)
A = 0.036456 B = 0.009904 C = 0.009321
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 767.855017 B = 2826.581383 C = 3003.114752
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.124 3.876
3 N -0.637 5.637
4 C 0.245 3.755
5 N -0.495 5.495
6 C 0.204 3.796
7 H -0.033 1.033
8 C -0.119 4.119
9 C -0.527 4.527
10 H 0.064 0.936
11 C 0.015 3.985
12 N -0.916 5.916
13 Si 0.957 3.043
14 H -0.282 1.282
15 H -0.282 1.282
16 H -0.264 1.264
17 C 0.010 3.990
18 C 0.490 3.510
19 O -0.578 6.578
20 H 0.051 0.949
21 H 0.097 0.903
22 H 0.022 0.978
23 H 0.118 0.882
24 H 0.075 0.925
25 H 0.084 0.916
26 H 0.118 0.882
27 H 0.036 0.964
28 H 0.039 0.961
29 H 0.060 0.940
30 H 0.262 0.738
31 H 0.097 0.903
32 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.591 -8.707 3.135 10.812
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.003 3.997
3 N -0.373 5.373
4 C 0.034 3.966
5 N -0.220 5.220
6 C 0.097 3.903
7 H -0.016 1.016
8 C -0.177 4.177
9 C -0.566 4.566
10 H 0.082 0.918
11 C -0.185 4.185
12 N -0.555 5.555
13 Si 0.782 3.218
14 H -0.208 1.208
15 H -0.208 1.208
16 H -0.188 1.188
17 C -0.121 4.121
18 C 0.278 3.722
19 O -0.458 6.458
20 H 0.071 0.929
21 H 0.116 0.884
22 H 0.041 0.959
23 H 0.136 0.864
24 H 0.093 0.907
25 H 0.102 0.898
26 H 0.136 0.864
27 H 0.055 0.945
28 H 0.058 0.942
29 H 0.079 0.921
30 H 0.071 0.929
31 H 0.116 0.884
32 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges 5.673 -8.588 2.960 10.710
hybrid contribution -1.138 0.540 -0.995 1.605
sum 4.536 -8.049 1.965 9.445
Atomic orbital electron populations
1.22128 0.96184 1.03239 1.00746 1.21510 0.94036 0.79777 1.04415
1.49217 1.64764 1.15157 1.08189 1.23468 1.02902 0.83166 0.87097
1.65697 1.29323 1.12481 1.14450 1.19324 0.83502 0.92877 0.94592
1.01584 1.21607 1.01870 0.98762 0.95468 1.21407 0.97430 1.02749
1.34979 0.91777 1.25668 0.95129 1.01634 0.96031 1.69997 1.02060
1.38946 1.44546 0.85567 0.78331 0.79652 0.78204 1.20803 1.20757
1.18807 1.23104 1.03749 0.93842 0.91422 1.22015 0.75957 0.89608
0.84655 1.90611 1.56129 1.77903 1.21159 0.92943 0.88421 0.95909
0.86437 0.90659 0.89792 0.86441 0.94531 0.94160 0.92142 0.92864
0.88449 0.85096
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.43 10.24 71.98 0.74 -3.69 16
2 C 0.12 3.16 6.76 86.38 0.58 3.75 16
3 N -0.64 -21.00 2.97 -829.12 -2.46 -23.46 16
4 C 0.24 7.60 7.01 170.23 1.19 8.79 16
5 N -0.50 -19.50 5.36 -883.53 -4.74 -24.24 16
6 C 0.20 9.85 1.83 44.17 0.08 9.93 16
7 H -0.03 -1.86 8.08 -2.38 -0.02 -1.88 16
8 C -0.12 -5.39 9.01 71.98 0.65 -4.75 16
9 C -0.53 -28.08 7.47 25.60 0.19 -27.89 16
10 H 0.06 3.36 6.85 -2.91 -0.02 3.34 16
11 C 0.01 0.80 5.30 84.66 0.45 1.25 16
12 N -0.92 -51.79 11.32 21.45 0.24 -51.55 16
13 Si 0.96 43.19 29.54 68.60 2.03 45.22 16
14 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16
15 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16
16 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16
17 C 0.01 0.38 6.32 85.50 0.54 0.92 16
18 C 0.49 19.73 8.13 87.84 0.71 20.44 16
19 O -0.58 -26.89 17.73 -3.02 -0.05 -26.94 16
20 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16
21 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16
22 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16
23 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16
24 H 0.07 1.97 8.01 -2.39 -0.02 1.95 16
25 H 0.08 2.56 6.17 -2.39 -0.01 2.55 16
26 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16
27 H 0.04 1.40 6.53 -2.39 -0.02 1.38 16
28 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16
29 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16
30 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16
31 H 0.10 4.36 6.02 -2.39 -0.01 4.34 16
32 H 0.13 4.23 8.14 -2.39 -0.02 4.21 16
Total: -1.00 -64.91 263.35 1.25 -63.66
By element:
Atomic # 1 Polarization: 7.46 SS G_CDS: 1.10 Total: 8.55 kcal
Atomic # 6 Polarization: 3.63 SS G_CDS: 5.14 Total: 8.77 kcal
Atomic # 7 Polarization: -92.30 SS G_CDS: -6.96 Total: -99.26 kcal
Atomic # 8 Polarization: -26.89 SS G_CDS: -0.05 Total: -26.94 kcal
Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal
Total: -64.91 1.25 -63.66 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000306572384.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.082 kcal
(2) G-P(sol) polarization free energy of solvation -64.911 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.829 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.251 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.660 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.578 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds