Wall clock time and date at job start Mon Mar 30 2020 02:52:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46899 * 1
3 3 C 1.47885 * 110.99991 * 2 1
4 4 C 1.52580 * 111.75894 * 182.64273 * 3 2 1
5 5 O 1.44024 * 111.74324 * 49.74894 * 4 3 2
6 6 C 1.41213 * 110.56696 * 304.55821 * 5 4 3
7 7 H 1.09003 * 109.74156 * 306.00876 * 6 5 4
8 8 C 1.52167 * 118.68724 * 179.17354 * 6 5 4
9 9 N 1.48227 * 105.96247 * 214.94490 * 8 6 5
10 10 C 1.36932 * 125.80025 * 182.92183 * 9 8 6
11 11 H 1.08002 * 120.00349 * 167.97933 * 10 9 8
12 12 C 1.38807 * 120.00095 * 347.98670 * 10 9 8
13 13 N 1.31618 * 120.00144 * 165.68202 * 12 10 9
14 14 Si 1.86799 * 120.00108 * 345.67508 * 12 10 9
15 15 H 1.48496 * 109.47407 * 185.39703 * 14 12 10
16 16 H 1.48502 * 109.47103 * 65.39218 * 14 12 10
17 17 H 1.48498 * 109.47044 * 305.39669 * 14 12 10
18 18 C 1.48634 * 108.39948 * 2.65806 * 9 8 6
19 19 C 1.45569 * 110.99798 * 239.96336 * 2 1 3
20 20 H 1.08998 * 111.05703 * 65.61018 * 19 2 1
21 21 H 1.08998 * 109.46826 * 180.02562 * 1 2 3
22 22 H 1.09001 * 109.46923 * 300.03527 * 1 2 3
23 23 H 1.08996 * 109.47281 * 60.03490 * 1 2 3
24 24 H 1.08998 * 109.02066 * 62.05532 * 3 2 1
25 25 H 1.08994 * 108.96123 * 303.18887 * 3 2 1
26 26 H 1.08992 * 109.02251 * 289.16532 * 4 3 2
27 27 H 1.08998 * 108.96120 * 170.29048 * 4 3 2
28 28 H 1.08998 * 110.27049 * 95.75669 * 8 6 5
29 29 H 1.09003 * 110.03049 * 334.00245 * 8 6 5
30 30 H 0.97004 * 120.00311 * 354.91884 * 13 12 10
31 31 H 1.08995 * 110.60908 * 143.15447 * 18 9 8
32 32 H 1.08989 * 110.61298 * 265.98693 * 18 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9990 1.3806 0.0000
4 6 3.5232 1.4014 -0.0653
5 8 4.0234 0.5613 -1.1229
6 6 3.5339 -0.7559 -0.9836
7 1 3.7623 -1.1300 0.0144
8 6 3.9342 -1.7971 -2.0186
9 7 2.7586 -2.6856 -2.1788
10 6 2.6980 -3.7984 -2.9744
11 1 1.8713 -4.4867 -2.8783
12 6 3.6992 -4.0419 -3.9045
13 7 3.8016 -5.2279 -4.4660
14 14 4.9011 -2.6863 -4.3596
15 1 5.7823 -3.1545 -5.4593
16 1 5.7282 -2.3401 -3.1757
17 1 4.1483 -1.4863 -4.8053
18 6 1.6587 -2.1671 -1.3239
19 6 1.9906 -0.6803 -1.1765
20 1 1.7388 -0.1366 -2.0871
21 1 -0.3633 -1.0277 0.0005
22 1 -0.3633 0.5144 0.8897
23 1 -0.3633 0.5133 -0.8902
24 1 1.6754 1.8853 0.9103
25 1 1.5991 1.9135 -0.8626
26 1 3.9244 1.0519 0.8859
27 1 3.8565 2.4249 -0.2368
28 1 4.7923 -2.3695 -1.6662
29 1 4.1694 -1.3111 -2.9655
30 1 3.2254 -5.9528 -4.1769
31 1 0.6954 -2.2981 -1.8168
32 1 1.6620 -2.6615 -0.3527
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000306607735.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:52:05
Heat of formation + Delta-G solvation = 14.587007 kcal
Electronic energy + Delta-G solvation = -15074.562016 eV
Core-core repulsion = 12651.048536 eV
Total energy + Delta-G solvation = -2423.513480 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 212.127 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-40.13343 -36.30472 -35.70116 -32.35919 -30.01812 -28.53605 -28.05825 -25.25945
-22.88584 -22.30282 -20.62954 -19.88499 -17.53587 -16.36694 -15.96955 -15.47805
-15.03951 -14.81402 -14.06037 -13.82571 -13.23043 -13.03939 -12.83211 -12.29415
-12.26749 -11.85038 -11.45120 -11.07557 -11.00388 -10.82089 -10.38939 -10.18904
-9.32569 -9.24890 -8.97353 -8.68803 -8.38997 -7.07457 -6.31037 -3.23962
3.47495 3.55922 3.74109 3.78862 3.90610 4.64229 4.84212 4.87059
4.95486 5.12384 5.27058 5.39050 5.45183 5.49037 5.52262 5.58361
5.69253 5.74721 5.89120 5.90030 6.17726 6.35124 6.38497 6.50438
6.61054 6.93009 7.10299 7.34874 7.59688 8.31234 9.01425 9.52262
10.19145 11.19556
Molecular weight = 212.13amu
Principal moments of inertia in cm(-1)
A = 0.044203 B = 0.011208 C = 0.009349
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 633.282346 B = 2497.626794 C = 2994.149104
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.021 3.979
2 N -0.517 5.517
3 C 0.015 3.985
4 C 0.063 3.937
5 O -0.368 6.368
6 C 0.079 3.921
7 H 0.073 0.927
8 C 0.122 3.878
9 N -0.610 5.610
10 C -0.320 4.320
11 H 0.081 0.919
12 C -0.019 4.019
13 N -0.926 5.926
14 Si 1.065 2.935
15 H -0.300 1.300
16 H -0.284 1.284
17 H -0.296 1.296
18 C 0.149 3.851
19 C 0.018 3.982
20 H 0.060 0.940
21 H 0.074 0.926
22 H 0.065 0.935
23 H 0.026 0.974
24 H 0.084 0.916
25 H 0.040 0.960
26 H 0.058 0.942
27 H 0.096 0.904
28 H 0.061 0.939
29 H 0.041 0.959
30 H 0.262 0.738
31 H 0.048 0.952
32 H 0.039 0.961
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.653 13.465 9.928 17.123
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 N -0.241 5.241
3 C -0.114 4.114
4 C -0.014 4.014
5 O -0.286 6.286
6 C 0.020 3.980
7 H 0.091 0.909
8 C -0.002 4.002
9 N -0.341 5.341
10 C -0.447 4.447
11 H 0.099 0.901
12 C -0.218 4.218
13 N -0.568 5.568
14 Si 0.899 3.101
15 H -0.228 1.228
16 H -0.211 1.211
17 H -0.225 1.225
18 C 0.023 3.977
19 C -0.092 4.092
20 H 0.078 0.922
21 H 0.092 0.908
22 H 0.084 0.916
23 H 0.044 0.956
24 H 0.103 0.897
25 H 0.058 0.942
26 H 0.076 0.924
27 H 0.114 0.886
28 H 0.079 0.921
29 H 0.058 0.942
30 H 0.072 0.928
31 H 0.066 0.934
32 H 0.057 0.943
Dipole moment (debyes) X Y Z Total
from point charges -2.114 13.545 9.170 16.493
hybrid contribution -1.931 0.139 0.508 2.001
sum -4.045 13.684 9.678 17.242
Atomic orbital electron populations
1.22421 0.87468 1.02625 1.00254 1.62953 1.08309 1.13391 1.39489
1.22831 0.96483 0.90412 1.01633 1.22644 0.92220 0.95306 0.91258
1.87973 1.71099 1.20043 1.49498 1.22585 0.91758 0.83718 0.99913
0.90931 1.21577 0.92260 0.90408 0.95969 1.45243 1.06819 1.29703
1.52295 1.20161 1.11042 0.97996 1.15515 0.90136 1.25873 0.99330
1.01690 0.94941 1.70901 1.40321 1.00787 1.44745 0.83926 0.76276
0.74157 0.75759 1.22780 1.21108 1.22477 1.21261 0.92478 0.88900
0.95038 1.23315 0.97108 0.97437 0.91309 0.92225 0.90754 0.91590
0.95560 0.89723 0.94155 0.92390 0.88556 0.92091 0.94203 0.92808
0.93369 0.94323
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.26 9.44 60.06 0.57 0.82 16
2 N -0.52 -7.72 5.05 -233.57 -1.18 -8.90 16
3 C 0.01 0.18 5.53 -3.50 -0.02 0.16 16
4 C 0.06 0.82 6.84 36.94 0.25 1.07 16
5 O -0.37 -6.62 10.93 -34.99 -0.38 -7.01 16
6 C 0.08 1.54 3.01 -25.71 -0.08 1.47 16
7 H 0.07 1.37 8.06 -51.93 -0.42 0.95 16
8 C 0.12 2.87 4.50 -3.52 -0.02 2.85 16
9 N -0.61 -15.55 3.36 -170.56 -0.57 -16.12 16
10 C -0.32 -9.36 10.58 -15.06 -0.16 -9.51 16
11 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16
12 C -0.02 -0.56 5.50 -17.43 -0.10 -0.66 16
13 N -0.93 -29.47 13.70 55.49 0.76 -28.71 16
14 Si 1.07 27.70 24.54 -169.99 -4.17 23.53 16
15 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16
16 H -0.28 -6.82 5.40 56.52 0.31 -6.52 16
17 H -0.30 -7.56 6.86 56.52 0.39 -7.17 16
18 C 0.15 3.12 6.28 -2.84 -0.02 3.11 16
19 C 0.02 0.34 2.20 -66.96 -0.15 0.19 16
20 H 0.06 1.19 8.12 -51.93 -0.42 0.77 16
21 H 0.07 0.94 7.57 -51.93 -0.39 0.55 16
22 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
23 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16
24 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16
25 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16
26 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16
27 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16
28 H 0.06 1.46 6.76 -51.93 -0.35 1.11 16
29 H 0.04 0.99 4.05 -51.93 -0.21 0.78 16
30 H 0.26 8.20 8.73 -40.82 -0.36 7.84 16
31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16
32 H 0.04 0.80 8.14 -51.94 -0.42 0.37 16
LS Contribution 247.30 15.07 3.73 3.73
Total: -1.00 -32.30 247.30 -6.39 -38.69
By element:
Atomic # 1 Polarization: 0.15 SS G_CDS: -4.86 Total: -4.71 kcal
Atomic # 6 Polarization: -0.79 SS G_CDS: 0.29 Total: -0.50 kcal
Atomic # 7 Polarization: -52.74 SS G_CDS: -0.99 Total: -53.74 kcal
Atomic # 8 Polarization: -6.62 SS G_CDS: -0.38 Total: -7.01 kcal
Atomic # 14 Polarization: 27.70 SS G_CDS: -4.17 Total: 23.53 kcal
Total LS contribution 3.73 Total: 3.73 kcal
Total: -32.30 -6.39 -38.69 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000306607735.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.282 kcal
(2) G-P(sol) polarization free energy of solvation -32.300 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.982 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.395 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.695 kcal
(6) G-S(sol) free energy of system = (1) + (5) 14.587 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds