Wall clock time and date at job start Mon Mar 30 2020 02:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47885 * 110.99991 * 2 1 4 4 C 1.52580 * 111.75894 * 182.64273 * 3 2 1 5 5 O 1.44024 * 111.74324 * 49.74894 * 4 3 2 6 6 C 1.41213 * 110.56696 * 304.55821 * 5 4 3 7 7 H 1.09003 * 109.74156 * 306.00876 * 6 5 4 8 8 C 1.52167 * 118.68724 * 179.17354 * 6 5 4 9 9 N 1.48227 * 105.96247 * 214.94490 * 8 6 5 10 10 C 1.36932 * 125.80025 * 182.92183 * 9 8 6 11 11 H 1.08002 * 120.00349 * 167.97933 * 10 9 8 12 12 C 1.38807 * 120.00095 * 347.98670 * 10 9 8 13 13 N 1.31618 * 120.00144 * 165.68202 * 12 10 9 14 14 Si 1.86799 * 120.00108 * 345.67508 * 12 10 9 15 15 H 1.48496 * 109.47407 * 185.39703 * 14 12 10 16 16 H 1.48502 * 109.47103 * 65.39218 * 14 12 10 17 17 H 1.48498 * 109.47044 * 305.39669 * 14 12 10 18 18 C 1.48634 * 108.39948 * 2.65806 * 9 8 6 19 19 C 1.45569 * 110.99798 * 239.96336 * 2 1 3 20 20 H 1.08998 * 111.05703 * 65.61018 * 19 2 1 21 21 H 1.08998 * 109.46826 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46923 * 300.03527 * 1 2 3 23 23 H 1.08996 * 109.47281 * 60.03490 * 1 2 3 24 24 H 1.08998 * 109.02066 * 62.05532 * 3 2 1 25 25 H 1.08994 * 108.96123 * 303.18887 * 3 2 1 26 26 H 1.08992 * 109.02251 * 289.16532 * 4 3 2 27 27 H 1.08998 * 108.96120 * 170.29048 * 4 3 2 28 28 H 1.08998 * 110.27049 * 95.75669 * 8 6 5 29 29 H 1.09003 * 110.03049 * 334.00245 * 8 6 5 30 30 H 0.97004 * 120.00311 * 354.91884 * 13 12 10 31 31 H 1.08995 * 110.60908 * 143.15447 * 18 9 8 32 32 H 1.08989 * 110.61298 * 265.98693 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3806 0.0000 4 6 3.5232 1.4014 -0.0653 5 8 4.0234 0.5613 -1.1229 6 6 3.5339 -0.7559 -0.9836 7 1 3.7623 -1.1300 0.0144 8 6 3.9342 -1.7971 -2.0186 9 7 2.7586 -2.6856 -2.1788 10 6 2.6980 -3.7984 -2.9744 11 1 1.8713 -4.4867 -2.8783 12 6 3.6992 -4.0419 -3.9045 13 7 3.8016 -5.2279 -4.4660 14 14 4.9011 -2.6863 -4.3596 15 1 5.7823 -3.1545 -5.4593 16 1 5.7282 -2.3401 -3.1757 17 1 4.1483 -1.4863 -4.8053 18 6 1.6587 -2.1671 -1.3239 19 6 1.9906 -0.6803 -1.1765 20 1 1.7388 -0.1366 -2.0871 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5144 0.8897 23 1 -0.3633 0.5133 -0.8902 24 1 1.6754 1.8853 0.9103 25 1 1.5991 1.9135 -0.8626 26 1 3.9244 1.0519 0.8859 27 1 3.8565 2.4249 -0.2368 28 1 4.7923 -2.3695 -1.6662 29 1 4.1694 -1.3111 -2.9655 30 1 3.2254 -5.9528 -4.1769 31 1 0.6954 -2.2981 -1.8168 32 1 1.6620 -2.6615 -0.3527 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306607735.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:05 Heat of formation + Delta-G solvation = 14.587007 kcal Electronic energy + Delta-G solvation = -15074.562016 eV Core-core repulsion = 12651.048536 eV Total energy + Delta-G solvation = -2423.513480 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.13343 -36.30472 -35.70116 -32.35919 -30.01812 -28.53605 -28.05825 -25.25945 -22.88584 -22.30282 -20.62954 -19.88499 -17.53587 -16.36694 -15.96955 -15.47805 -15.03951 -14.81402 -14.06037 -13.82571 -13.23043 -13.03939 -12.83211 -12.29415 -12.26749 -11.85038 -11.45120 -11.07557 -11.00388 -10.82089 -10.38939 -10.18904 -9.32569 -9.24890 -8.97353 -8.68803 -8.38997 -7.07457 -6.31037 -3.23962 3.47495 3.55922 3.74109 3.78862 3.90610 4.64229 4.84212 4.87059 4.95486 5.12384 5.27058 5.39050 5.45183 5.49037 5.52262 5.58361 5.69253 5.74721 5.89120 5.90030 6.17726 6.35124 6.38497 6.50438 6.61054 6.93009 7.10299 7.34874 7.59688 8.31234 9.01425 9.52262 10.19145 11.19556 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.044203 B = 0.011208 C = 0.009349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.282346 B = 2497.626794 C = 2994.149104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.517 5.517 3 C 0.015 3.985 4 C 0.063 3.937 5 O -0.368 6.368 6 C 0.079 3.921 7 H 0.073 0.927 8 C 0.122 3.878 9 N -0.610 5.610 10 C -0.320 4.320 11 H 0.081 0.919 12 C -0.019 4.019 13 N -0.926 5.926 14 Si 1.065 2.935 15 H -0.300 1.300 16 H -0.284 1.284 17 H -0.296 1.296 18 C 0.149 3.851 19 C 0.018 3.982 20 H 0.060 0.940 21 H 0.074 0.926 22 H 0.065 0.935 23 H 0.026 0.974 24 H 0.084 0.916 25 H 0.040 0.960 26 H 0.058 0.942 27 H 0.096 0.904 28 H 0.061 0.939 29 H 0.041 0.959 30 H 0.262 0.738 31 H 0.048 0.952 32 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.653 13.465 9.928 17.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.241 5.241 3 C -0.114 4.114 4 C -0.014 4.014 5 O -0.286 6.286 6 C 0.020 3.980 7 H 0.091 0.909 8 C -0.002 4.002 9 N -0.341 5.341 10 C -0.447 4.447 11 H 0.099 0.901 12 C -0.218 4.218 13 N -0.568 5.568 14 Si 0.899 3.101 15 H -0.228 1.228 16 H -0.211 1.211 17 H -0.225 1.225 18 C 0.023 3.977 19 C -0.092 4.092 20 H 0.078 0.922 21 H 0.092 0.908 22 H 0.084 0.916 23 H 0.044 0.956 24 H 0.103 0.897 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.114 0.886 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.114 13.545 9.170 16.493 hybrid contribution -1.931 0.139 0.508 2.001 sum -4.045 13.684 9.678 17.242 Atomic orbital electron populations 1.22421 0.87468 1.02625 1.00254 1.62953 1.08309 1.13391 1.39489 1.22831 0.96483 0.90412 1.01633 1.22644 0.92220 0.95306 0.91258 1.87973 1.71099 1.20043 1.49498 1.22585 0.91758 0.83718 0.99913 0.90931 1.21577 0.92260 0.90408 0.95969 1.45243 1.06819 1.29703 1.52295 1.20161 1.11042 0.97996 1.15515 0.90136 1.25873 0.99330 1.01690 0.94941 1.70901 1.40321 1.00787 1.44745 0.83926 0.76276 0.74157 0.75759 1.22780 1.21108 1.22477 1.21261 0.92478 0.88900 0.95038 1.23315 0.97108 0.97437 0.91309 0.92225 0.90754 0.91590 0.95560 0.89723 0.94155 0.92390 0.88556 0.92091 0.94203 0.92808 0.93369 0.94323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.44 60.06 0.57 0.82 16 2 N -0.52 -7.72 5.05 -233.57 -1.18 -8.90 16 3 C 0.01 0.18 5.53 -3.50 -0.02 0.16 16 4 C 0.06 0.82 6.84 36.94 0.25 1.07 16 5 O -0.37 -6.62 10.93 -34.99 -0.38 -7.01 16 6 C 0.08 1.54 3.01 -25.71 -0.08 1.47 16 7 H 0.07 1.37 8.06 -51.93 -0.42 0.95 16 8 C 0.12 2.87 4.50 -3.52 -0.02 2.85 16 9 N -0.61 -15.55 3.36 -170.56 -0.57 -16.12 16 10 C -0.32 -9.36 10.58 -15.06 -0.16 -9.51 16 11 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 12 C -0.02 -0.56 5.50 -17.43 -0.10 -0.66 16 13 N -0.93 -29.47 13.70 55.49 0.76 -28.71 16 14 Si 1.07 27.70 24.54 -169.99 -4.17 23.53 16 15 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 16 H -0.28 -6.82 5.40 56.52 0.31 -6.52 16 17 H -0.30 -7.56 6.86 56.52 0.39 -7.17 16 18 C 0.15 3.12 6.28 -2.84 -0.02 3.11 16 19 C 0.02 0.34 2.20 -66.96 -0.15 0.19 16 20 H 0.06 1.19 8.12 -51.93 -0.42 0.77 16 21 H 0.07 0.94 7.57 -51.93 -0.39 0.55 16 22 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 27 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 1.46 6.76 -51.93 -0.35 1.11 16 29 H 0.04 0.99 4.05 -51.93 -0.21 0.78 16 30 H 0.26 8.20 8.73 -40.82 -0.36 7.84 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.04 0.80 8.14 -51.94 -0.42 0.37 16 LS Contribution 247.30 15.07 3.73 3.73 Total: -1.00 -32.30 247.30 -6.39 -38.69 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: -4.86 Total: -4.71 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 0.29 Total: -0.50 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.99 Total: -53.74 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.38 Total: -7.01 kcal Atomic # 14 Polarization: 27.70 SS G_CDS: -4.17 Total: 23.53 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -32.30 -6.39 -38.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306607735.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.282 kcal (2) G-P(sol) polarization free energy of solvation -32.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds