Wall clock time and date at job start Mon Mar 30 2020 02:52:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46899 * 1
3 3 C 1.47885 * 110.99991 * 2 1
4 4 C 1.52580 * 111.75894 * 182.64273 * 3 2 1
5 5 O 1.44024 * 111.74324 * 49.74894 * 4 3 2
6 6 C 1.41213 * 110.56696 * 304.55821 * 5 4 3
7 7 H 1.09003 * 109.74156 * 306.00876 * 6 5 4
8 8 C 1.52167 * 118.68724 * 179.17354 * 6 5 4
9 9 N 1.48227 * 105.96247 * 214.94490 * 8 6 5
10 10 C 1.36932 * 125.80025 * 182.92183 * 9 8 6
11 11 H 1.08002 * 120.00349 * 167.97933 * 10 9 8
12 12 C 1.38807 * 120.00095 * 347.98670 * 10 9 8
13 13 N 1.31618 * 120.00144 * 165.68202 * 12 10 9
14 14 Si 1.86799 * 120.00108 * 345.67508 * 12 10 9
15 15 H 1.48496 * 109.47407 * 185.39703 * 14 12 10
16 16 H 1.48502 * 109.47103 * 65.39218 * 14 12 10
17 17 H 1.48498 * 109.47044 * 305.39669 * 14 12 10
18 18 C 1.48634 * 108.39948 * 2.65806 * 9 8 6
19 19 C 1.45569 * 110.99798 * 239.96336 * 2 1 3
20 20 H 1.08998 * 111.05703 * 65.61018 * 19 2 1
21 21 H 1.08998 * 109.46826 * 180.02562 * 1 2 3
22 22 H 1.09001 * 109.46923 * 300.03527 * 1 2 3
23 23 H 1.08996 * 109.47281 * 60.03490 * 1 2 3
24 24 H 1.08998 * 109.02066 * 62.05532 * 3 2 1
25 25 H 1.08994 * 108.96123 * 303.18887 * 3 2 1
26 26 H 1.08992 * 109.02251 * 289.16532 * 4 3 2
27 27 H 1.08998 * 108.96120 * 170.29048 * 4 3 2
28 28 H 1.08998 * 110.27049 * 95.75669 * 8 6 5
29 29 H 1.09003 * 110.03049 * 334.00245 * 8 6 5
30 30 H 0.97004 * 120.00311 * 354.91884 * 13 12 10
31 31 H 1.08995 * 110.60908 * 143.15447 * 18 9 8
32 32 H 1.08989 * 110.61298 * 265.98693 * 18 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9990 1.3806 0.0000
4 6 3.5232 1.4014 -0.0653
5 8 4.0234 0.5613 -1.1229
6 6 3.5339 -0.7559 -0.9836
7 1 3.7623 -1.1300 0.0144
8 6 3.9342 -1.7971 -2.0186
9 7 2.7586 -2.6856 -2.1788
10 6 2.6980 -3.7984 -2.9744
11 1 1.8713 -4.4867 -2.8783
12 6 3.6992 -4.0419 -3.9045
13 7 3.8016 -5.2279 -4.4660
14 14 4.9011 -2.6863 -4.3596
15 1 5.7823 -3.1545 -5.4593
16 1 5.7282 -2.3401 -3.1757
17 1 4.1483 -1.4863 -4.8053
18 6 1.6587 -2.1671 -1.3239
19 6 1.9906 -0.6803 -1.1765
20 1 1.7388 -0.1366 -2.0871
21 1 -0.3633 -1.0277 0.0005
22 1 -0.3633 0.5144 0.8897
23 1 -0.3633 0.5133 -0.8902
24 1 1.6754 1.8853 0.9103
25 1 1.5991 1.9135 -0.8626
26 1 3.9244 1.0519 0.8859
27 1 3.8565 2.4249 -0.2368
28 1 4.7923 -2.3695 -1.6662
29 1 4.1694 -1.3111 -2.9655
30 1 3.2254 -5.9528 -4.1769
31 1 0.6954 -2.2981 -1.8168
32 1 1.6620 -2.6615 -0.3527
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000306607735.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:52:04
Heat of formation + Delta-G solvation = -11.531876 kcal
Electronic energy + Delta-G solvation = -15075.694616 eV
Core-core repulsion = 12651.048536 eV
Total energy + Delta-G solvation = -2424.646080 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 212.127 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-41.50745 -37.97721 -36.93768 -34.48989 -31.52072 -29.94235 -29.71246 -26.75578
-24.43772 -23.67409 -22.37055 -21.33569 -19.69819 -17.93143 -17.34329 -16.77582
-16.42526 -16.19873 -15.72826 -15.27586 -14.88309 -14.66699 -14.52347 -13.99832
-13.39354 -13.19010 -13.06109 -12.69746 -12.51737 -12.24992 -12.00752 -11.71235
-11.46083 -11.15229 -10.72132 -10.54294 -9.56030 -9.21183 -8.69211 -5.54496
1.40231 1.46723 1.68755 2.40489 2.49450 2.69539 3.10855 3.33351
3.39907 3.80596 3.94216 4.01477 4.15101 4.22348 4.28199 4.46491
4.54086 4.59324 4.63369 4.70336 4.78236 4.84694 4.92314 4.97206
4.99516 5.40408 5.80287 5.91935 6.01024 6.07746 6.71995 7.32001
7.98525 8.83514
Molecular weight = 212.13amu
Principal moments of inertia in cm(-1)
A = 0.044203 B = 0.011208 C = 0.009349
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 633.282346 B = 2497.626794 C = 2994.149104
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.019 3.981
2 N -0.522 5.522
3 C 0.014 3.986
4 C 0.053 3.947
5 O -0.388 6.388
6 C 0.090 3.910
7 H 0.081 0.919
8 C 0.114 3.886
9 N -0.631 5.631
10 C -0.310 4.310
11 H 0.055 0.945
12 C -0.072 4.072
13 N -0.960 5.960
14 Si 1.103 2.897
15 H -0.305 1.305
16 H -0.255 1.255
17 H -0.290 1.290
18 C 0.149 3.851
19 C 0.036 3.964
20 H 0.043 0.957
21 H 0.066 0.934
22 H 0.096 0.904
23 H 0.027 0.973
24 H 0.121 0.879
25 H 0.040 0.960
26 H 0.071 0.929
27 H 0.128 0.872
28 H 0.053 0.947
29 H 0.031 0.969
30 H 0.251 0.749
31 H 0.046 0.954
32 H 0.046 0.954
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.715 16.313 11.783 20.464
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 N -0.246 5.246
3 C -0.114 4.114
4 C -0.023 4.023
5 O -0.306 6.306
6 C 0.031 3.969
7 H 0.099 0.901
8 C -0.010 4.010
9 N -0.361 5.361
10 C -0.438 4.438
11 H 0.073 0.927
12 C -0.265 4.265
13 N -0.603 5.603
14 Si 0.931 3.069
15 H -0.234 1.234
16 H -0.180 1.180
17 H -0.218 1.218
18 C 0.024 3.976
19 C -0.075 4.075
20 H 0.061 0.939
21 H 0.085 0.915
22 H 0.114 0.886
23 H 0.045 0.955
24 H 0.139 0.861
25 H 0.059 0.941
26 H 0.089 0.911
27 H 0.146 0.854
28 H 0.071 0.929
29 H 0.048 0.952
30 H 0.060 0.940
31 H 0.064 0.936
32 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -2.204 16.432 11.078 19.940
hybrid contribution -2.025 -0.707 0.036 2.145
sum -4.230 15.725 11.114 19.715
Atomic orbital electron populations
1.22503 0.85883 1.02702 1.01767 1.62966 1.09811 1.14930 1.36929
1.22979 0.96026 0.88905 1.03480 1.23047 0.92707 0.95999 0.90505
1.87946 1.71674 1.19310 1.51684 1.22249 0.92100 0.84101 0.98433
0.90110 1.21591 0.91342 0.91230 0.96881 1.45306 1.09356 1.29304
1.52149 1.20072 1.09667 0.98635 1.15469 0.92684 1.27003 1.01391
1.02696 0.95452 1.70986 1.41397 1.01494 1.46466 0.83446 0.75067
0.71988 0.76353 1.23378 1.17997 1.21840 1.21329 0.91062 0.91011
0.94230 1.22955 0.96686 0.95509 0.92323 0.93889 0.91543 0.88575
0.95467 0.86117 0.94137 0.91115 0.85374 0.92868 0.95160 0.94034
0.93586 0.93640
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.41 9.44 127.69 1.21 1.62 16
2 N -0.52 -13.77 5.05 -892.87 -4.51 -18.28 16
3 C 0.01 0.28 5.53 85.97 0.48 0.75 16
4 C 0.05 1.15 6.84 71.84 0.49 1.64 16
5 O -0.39 -12.76 10.93 -148.12 -1.62 -14.38 16
6 C 0.09 3.32 3.01 31.26 0.09 3.42 16
7 H 0.08 2.83 8.06 -2.39 -0.02 2.81 16
8 C 0.11 5.21 4.50 85.77 0.39 5.60 16
9 N -0.63 -32.13 3.36 -693.53 -2.33 -34.46 16
10 C -0.31 -18.53 10.58 84.03 0.89 -17.64 16
11 H 0.06 3.49 8.06 -2.91 -0.02 3.46 16
12 C -0.07 -4.41 5.50 84.86 0.47 -3.94 16
13 N -0.96 -62.81 13.70 21.65 0.30 -62.52 16
14 Si 1.10 56.40 24.54 68.60 1.68 58.08 16
15 H -0.31 -15.74 7.11 99.48 0.71 -15.04 16
16 H -0.25 -11.72 5.40 99.48 0.54 -11.18 16
17 H -0.29 -14.41 6.86 99.48 0.68 -13.73 16
18 C 0.15 6.11 6.28 85.98 0.54 6.65 16
19 C 0.04 1.25 2.20 46.12 0.10 1.35 16
20 H 0.04 1.65 8.12 -2.39 -0.02 1.63 16
21 H 0.07 1.53 7.57 -2.39 -0.02 1.51 16
22 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16
23 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16
24 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16
25 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16
26 H 0.07 1.38 8.13 -2.39 -0.02 1.36 16
27 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16
28 H 0.05 2.49 6.76 -2.39 -0.02 2.47 16
29 H 0.03 1.48 4.05 -2.39 -0.01 1.47 16
30 H 0.25 16.35 8.73 -92.70 -0.81 15.54 16
31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16
32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16
Total: -1.00 -70.66 247.30 -0.98 -71.64
By element:
Atomic # 1 Polarization: -0.40 SS G_CDS: 0.86 Total: 0.45 kcal
Atomic # 6 Polarization: -5.20 SS G_CDS: 4.65 Total: -0.55 kcal
Atomic # 7 Polarization: -108.71 SS G_CDS: -6.55 Total: -115.25 kcal
Atomic # 8 Polarization: -12.76 SS G_CDS: -1.62 Total: -14.38 kcal
Atomic # 14 Polarization: 56.40 SS G_CDS: 1.68 Total: 58.08 kcal
Total: -70.66 -0.98 -71.64 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000306607735.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 60.111 kcal
(2) G-P(sol) polarization free energy of solvation -70.663 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.552 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.980 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.643 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.532 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds