Wall clock time and date at job start Mon Mar 30 2020 02:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47885 * 110.99991 * 2 1 4 4 C 1.52580 * 111.75894 * 182.64273 * 3 2 1 5 5 O 1.44024 * 111.74324 * 49.74894 * 4 3 2 6 6 C 1.41213 * 110.56696 * 304.55821 * 5 4 3 7 7 H 1.09003 * 109.74156 * 306.00876 * 6 5 4 8 8 C 1.52167 * 118.68724 * 179.17354 * 6 5 4 9 9 N 1.48227 * 105.96247 * 214.94490 * 8 6 5 10 10 C 1.36932 * 125.80025 * 182.92183 * 9 8 6 11 11 H 1.08002 * 120.00349 * 167.97933 * 10 9 8 12 12 C 1.38807 * 120.00095 * 347.98670 * 10 9 8 13 13 N 1.31618 * 120.00144 * 165.68202 * 12 10 9 14 14 Si 1.86799 * 120.00108 * 345.67508 * 12 10 9 15 15 H 1.48496 * 109.47407 * 185.39703 * 14 12 10 16 16 H 1.48502 * 109.47103 * 65.39218 * 14 12 10 17 17 H 1.48498 * 109.47044 * 305.39669 * 14 12 10 18 18 C 1.48634 * 108.39948 * 2.65806 * 9 8 6 19 19 C 1.45569 * 110.99798 * 239.96336 * 2 1 3 20 20 H 1.08998 * 111.05703 * 65.61018 * 19 2 1 21 21 H 1.08998 * 109.46826 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46923 * 300.03527 * 1 2 3 23 23 H 1.08996 * 109.47281 * 60.03490 * 1 2 3 24 24 H 1.08998 * 109.02066 * 62.05532 * 3 2 1 25 25 H 1.08994 * 108.96123 * 303.18887 * 3 2 1 26 26 H 1.08992 * 109.02251 * 289.16532 * 4 3 2 27 27 H 1.08998 * 108.96120 * 170.29048 * 4 3 2 28 28 H 1.08998 * 110.27049 * 95.75669 * 8 6 5 29 29 H 1.09003 * 110.03049 * 334.00245 * 8 6 5 30 30 H 0.97004 * 120.00311 * 354.91884 * 13 12 10 31 31 H 1.08995 * 110.60908 * 143.15447 * 18 9 8 32 32 H 1.08989 * 110.61298 * 265.98693 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3806 0.0000 4 6 3.5232 1.4014 -0.0653 5 8 4.0234 0.5613 -1.1229 6 6 3.5339 -0.7559 -0.9836 7 1 3.7623 -1.1300 0.0144 8 6 3.9342 -1.7971 -2.0186 9 7 2.7586 -2.6856 -2.1788 10 6 2.6980 -3.7984 -2.9744 11 1 1.8713 -4.4867 -2.8783 12 6 3.6992 -4.0419 -3.9045 13 7 3.8016 -5.2279 -4.4660 14 14 4.9011 -2.6863 -4.3596 15 1 5.7823 -3.1545 -5.4593 16 1 5.7282 -2.3401 -3.1757 17 1 4.1483 -1.4863 -4.8053 18 6 1.6587 -2.1671 -1.3239 19 6 1.9906 -0.6803 -1.1765 20 1 1.7388 -0.1366 -2.0871 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5144 0.8897 23 1 -0.3633 0.5133 -0.8902 24 1 1.6754 1.8853 0.9103 25 1 1.5991 1.9135 -0.8626 26 1 3.9244 1.0519 0.8859 27 1 3.8565 2.4249 -0.2368 28 1 4.7923 -2.3695 -1.6662 29 1 4.1694 -1.3111 -2.9655 30 1 3.2254 -5.9528 -4.1769 31 1 0.6954 -2.2981 -1.8168 32 1 1.6620 -2.6615 -0.3527 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306607735.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:04 Heat of formation + Delta-G solvation = -11.531876 kcal Electronic energy + Delta-G solvation = -15075.694616 eV Core-core repulsion = 12651.048536 eV Total energy + Delta-G solvation = -2424.646080 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.50745 -37.97721 -36.93768 -34.48989 -31.52072 -29.94235 -29.71246 -26.75578 -24.43772 -23.67409 -22.37055 -21.33569 -19.69819 -17.93143 -17.34329 -16.77582 -16.42526 -16.19873 -15.72826 -15.27586 -14.88309 -14.66699 -14.52347 -13.99832 -13.39354 -13.19010 -13.06109 -12.69746 -12.51737 -12.24992 -12.00752 -11.71235 -11.46083 -11.15229 -10.72132 -10.54294 -9.56030 -9.21183 -8.69211 -5.54496 1.40231 1.46723 1.68755 2.40489 2.49450 2.69539 3.10855 3.33351 3.39907 3.80596 3.94216 4.01477 4.15101 4.22348 4.28199 4.46491 4.54086 4.59324 4.63369 4.70336 4.78236 4.84694 4.92314 4.97206 4.99516 5.40408 5.80287 5.91935 6.01024 6.07746 6.71995 7.32001 7.98525 8.83514 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.044203 B = 0.011208 C = 0.009349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.282346 B = 2497.626794 C = 2994.149104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.522 5.522 3 C 0.014 3.986 4 C 0.053 3.947 5 O -0.388 6.388 6 C 0.090 3.910 7 H 0.081 0.919 8 C 0.114 3.886 9 N -0.631 5.631 10 C -0.310 4.310 11 H 0.055 0.945 12 C -0.072 4.072 13 N -0.960 5.960 14 Si 1.103 2.897 15 H -0.305 1.305 16 H -0.255 1.255 17 H -0.290 1.290 18 C 0.149 3.851 19 C 0.036 3.964 20 H 0.043 0.957 21 H 0.066 0.934 22 H 0.096 0.904 23 H 0.027 0.973 24 H 0.121 0.879 25 H 0.040 0.960 26 H 0.071 0.929 27 H 0.128 0.872 28 H 0.053 0.947 29 H 0.031 0.969 30 H 0.251 0.749 31 H 0.046 0.954 32 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.715 16.313 11.783 20.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.246 5.246 3 C -0.114 4.114 4 C -0.023 4.023 5 O -0.306 6.306 6 C 0.031 3.969 7 H 0.099 0.901 8 C -0.010 4.010 9 N -0.361 5.361 10 C -0.438 4.438 11 H 0.073 0.927 12 C -0.265 4.265 13 N -0.603 5.603 14 Si 0.931 3.069 15 H -0.234 1.234 16 H -0.180 1.180 17 H -0.218 1.218 18 C 0.024 3.976 19 C -0.075 4.075 20 H 0.061 0.939 21 H 0.085 0.915 22 H 0.114 0.886 23 H 0.045 0.955 24 H 0.139 0.861 25 H 0.059 0.941 26 H 0.089 0.911 27 H 0.146 0.854 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.204 16.432 11.078 19.940 hybrid contribution -2.025 -0.707 0.036 2.145 sum -4.230 15.725 11.114 19.715 Atomic orbital electron populations 1.22503 0.85883 1.02702 1.01767 1.62966 1.09811 1.14930 1.36929 1.22979 0.96026 0.88905 1.03480 1.23047 0.92707 0.95999 0.90505 1.87946 1.71674 1.19310 1.51684 1.22249 0.92100 0.84101 0.98433 0.90110 1.21591 0.91342 0.91230 0.96881 1.45306 1.09356 1.29304 1.52149 1.20072 1.09667 0.98635 1.15469 0.92684 1.27003 1.01391 1.02696 0.95452 1.70986 1.41397 1.01494 1.46466 0.83446 0.75067 0.71988 0.76353 1.23378 1.17997 1.21840 1.21329 0.91062 0.91011 0.94230 1.22955 0.96686 0.95509 0.92323 0.93889 0.91543 0.88575 0.95467 0.86117 0.94137 0.91115 0.85374 0.92868 0.95160 0.94034 0.93586 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.44 127.69 1.21 1.62 16 2 N -0.52 -13.77 5.05 -892.87 -4.51 -18.28 16 3 C 0.01 0.28 5.53 85.97 0.48 0.75 16 4 C 0.05 1.15 6.84 71.84 0.49 1.64 16 5 O -0.39 -12.76 10.93 -148.12 -1.62 -14.38 16 6 C 0.09 3.32 3.01 31.26 0.09 3.42 16 7 H 0.08 2.83 8.06 -2.39 -0.02 2.81 16 8 C 0.11 5.21 4.50 85.77 0.39 5.60 16 9 N -0.63 -32.13 3.36 -693.53 -2.33 -34.46 16 10 C -0.31 -18.53 10.58 84.03 0.89 -17.64 16 11 H 0.06 3.49 8.06 -2.91 -0.02 3.46 16 12 C -0.07 -4.41 5.50 84.86 0.47 -3.94 16 13 N -0.96 -62.81 13.70 21.65 0.30 -62.52 16 14 Si 1.10 56.40 24.54 68.60 1.68 58.08 16 15 H -0.31 -15.74 7.11 99.48 0.71 -15.04 16 16 H -0.25 -11.72 5.40 99.48 0.54 -11.18 16 17 H -0.29 -14.41 6.86 99.48 0.68 -13.73 16 18 C 0.15 6.11 6.28 85.98 0.54 6.65 16 19 C 0.04 1.25 2.20 46.12 0.10 1.35 16 20 H 0.04 1.65 8.12 -2.39 -0.02 1.63 16 21 H 0.07 1.53 7.57 -2.39 -0.02 1.51 16 22 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.07 1.38 8.13 -2.39 -0.02 1.36 16 27 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.05 2.49 6.76 -2.39 -0.02 2.47 16 29 H 0.03 1.48 4.05 -2.39 -0.01 1.47 16 30 H 0.25 16.35 8.73 -92.70 -0.81 15.54 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -70.66 247.30 -0.98 -71.64 By element: Atomic # 1 Polarization: -0.40 SS G_CDS: 0.86 Total: 0.45 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 4.65 Total: -0.55 kcal Atomic # 7 Polarization: -108.71 SS G_CDS: -6.55 Total: -115.25 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -1.62 Total: -14.38 kcal Atomic # 14 Polarization: 56.40 SS G_CDS: 1.68 Total: 58.08 kcal Total: -70.66 -0.98 -71.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306607735.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.111 kcal (2) G-P(sol) polarization free energy of solvation -70.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds