Wall clock time and date at job start Mon Mar 30 2020 02:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47409 * 2 1 4 4 C 1.50696 * 109.47496 * 120.00313 * 2 1 3 5 5 N 1.34777 * 120.00076 * 300.00073 * 4 2 1 6 6 O 1.21281 * 120.00074 * 119.99575 * 4 2 1 7 7 N 1.46902 * 109.46697 * 240.00106 * 2 1 3 8 8 C 1.47847 * 111.00309 * 295.83950 * 7 2 1 9 9 C 1.54902 * 104.79513 * 213.63789 * 8 7 2 10 10 C 1.55133 * 101.65647 * 37.07185 * 9 8 7 11 11 H 1.08999 * 110.70973 * 82.72707 * 10 9 8 12 12 C 1.50701 * 110.70578 * 205.96191 * 10 9 8 13 13 H 1.07997 * 119.99905 * 113.60013 * 12 10 9 14 14 C 1.37879 * 120.00292 * 293.59602 * 12 10 9 15 15 N 1.31512 * 120.00108 * 180.02562 * 14 12 10 16 16 Si 1.86803 * 119.99597 * 0.02562 * 14 12 10 17 17 H 1.48496 * 109.47179 * 89.99694 * 16 14 12 18 18 H 1.48504 * 109.47022 * 209.99809 * 16 14 12 19 19 H 1.48504 * 109.47027 * 329.99632 * 16 14 12 20 20 C 1.47451 * 110.99853 * 174.99678 * 7 2 1 21 21 H 1.09002 * 109.47628 * 59.99408 * 1 2 3 22 22 H 1.09001 * 109.47409 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46660 * 299.99527 * 1 2 3 24 24 H 0.97001 * 120.00485 * 180.02562 * 5 4 2 25 25 H 0.97005 * 119.99790 * 359.72082 * 5 4 2 26 26 H 1.09001 * 110.37213 * 332.46845 * 8 7 2 27 27 H 1.09004 * 110.37055 * 94.80695 * 8 7 2 28 28 H 1.08999 * 110.99493 * 278.97361 * 9 8 7 29 29 H 1.09005 * 111.02184 * 155.18057 * 9 8 7 30 30 H 0.97006 * 119.99434 * 180.02562 * 15 14 12 31 31 H 1.08998 * 109.88848 * 242.66049 * 20 7 2 32 32 H 1.08999 * 109.88880 * 3.85740 * 20 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7068 -0.2501 2.4545 6 8 2.7296 -1.6965 1.1190 7 7 2.0195 -0.6925 -1.1995 8 6 1.6289 -2.1184 -1.1847 9 6 2.8000 -2.8565 -1.8798 10 6 4.0247 -2.0544 -1.3668 11 1 4.3273 -2.4026 -0.3792 12 6 5.1704 -2.1500 -2.3411 13 1 5.5023 -1.2702 -2.8724 14 6 5.7950 -3.3606 -2.5542 15 7 6.7952 -3.4438 -3.4041 16 14 5.2206 -4.8824 -1.6357 17 1 4.1668 -5.5688 -2.4254 18 1 6.3686 -5.8030 -1.4364 19 1 4.6697 -4.4850 -0.3151 20 6 3.4885 -0.6091 -1.2952 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 2.0305 -0.7071 3.2465 25 1 1.1524 0.5410 2.5436 26 1 1.5141 -2.4697 -0.1593 27 1 0.7039 -2.2642 -1.7425 28 1 2.7154 -2.7889 -2.9644 29 1 2.8521 -3.8969 -1.5586 30 1 7.2343 -4.2957 -3.5543 31 1 3.7711 -0.0638 -2.1956 32 1 3.8897 -0.1080 -0.4142 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306767636.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:46 Heat of formation + Delta-G solvation = -26.710059 kcal Electronic energy + Delta-G solvation = -14997.008722 eV Core-core repulsion = 12571.704467 eV Total energy + Delta-G solvation = -2425.304255 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.24217 -37.14076 -34.09625 -33.16492 -31.67130 -28.69787 -28.37279 -24.29945 -23.71520 -21.08626 -19.66849 -19.21306 -17.36692 -16.85435 -16.39339 -15.22936 -14.90060 -14.45980 -13.98881 -13.71934 -12.77255 -12.51934 -12.24221 -12.11612 -11.93954 -11.87442 -11.11711 -10.82454 -10.52658 -10.33073 -10.04806 -9.86072 -9.58247 -9.43806 -9.30377 -8.78391 -8.40715 -7.68302 -5.94777 -3.91807 2.80340 3.40337 3.48159 3.58392 3.65009 4.42902 4.56747 4.96653 5.14484 5.21795 5.37988 5.54501 5.76230 5.80108 6.04636 6.13905 6.22848 6.29185 6.45598 6.80866 6.85531 7.01495 7.04627 7.22187 7.33364 7.45521 7.66530 7.85120 7.93555 8.44159 8.66602 9.09238 9.69727 11.18537 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.046373 B = 0.010070 C = 0.009631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.654680 B = 2779.878493 C = 2906.485007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.056 3.944 3 H 0.103 0.897 4 C 0.479 3.521 5 N -0.862 5.862 6 O -0.514 6.514 7 N -0.505 5.505 8 C 0.034 3.966 9 C -0.127 4.127 10 C 0.006 3.994 11 H 0.046 0.954 12 C -0.505 4.505 13 H 0.073 0.927 14 C 0.070 3.930 15 N -0.906 5.906 16 Si 0.876 3.124 17 H -0.278 1.278 18 H -0.296 1.296 19 H -0.261 1.261 20 C 0.063 3.937 21 H 0.075 0.925 22 H 0.059 0.941 23 H 0.057 0.943 24 H 0.394 0.606 25 H 0.396 0.604 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.261 0.739 31 H 0.074 0.926 32 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.759 7.257 10.220 18.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.058 4.058 3 H 0.121 0.879 4 C 0.262 3.738 5 N -0.427 5.427 6 O -0.388 6.388 7 N -0.228 5.228 8 C -0.093 4.093 9 C -0.165 4.165 10 C -0.013 4.013 11 H 0.064 0.936 12 C -0.543 4.543 13 H 0.091 0.909 14 C -0.130 4.130 15 N -0.545 5.545 16 Si 0.705 3.295 17 H -0.205 1.205 18 H -0.223 1.223 19 H -0.185 1.185 20 C -0.063 4.063 21 H 0.094 0.906 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.224 0.776 25 H 0.224 0.776 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -13.403 6.755 9.402 17.711 hybrid contribution 0.013 -1.055 1.598 1.915 sum -13.389 5.700 11.000 18.242 Atomic orbital electron populations 1.21751 0.92630 1.02747 1.02340 1.22096 0.97025 0.99352 0.87325 0.87941 1.22224 0.80016 0.85493 0.86074 1.44116 1.56614 1.33636 1.08352 1.90853 1.36103 1.25603 1.86219 1.64063 1.13834 1.13805 1.31125 1.23179 0.98345 0.87455 1.00289 1.22962 0.95695 0.97828 1.00038 1.20266 0.93088 0.90506 0.97463 0.93561 1.21070 1.13850 0.96391 1.22978 0.90922 1.24953 0.94550 0.98779 0.94754 1.69916 1.23192 1.25637 1.35777 0.86925 0.77727 0.83147 0.81695 1.20454 1.22258 1.18519 1.22756 0.84050 0.99954 0.99569 0.90637 0.92190 0.92407 0.77571 0.77590 0.92290 0.92345 0.91305 0.93412 0.92892 0.90802 0.94726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.06 37.15 0.34 -1.10 16 2 C 0.06 0.78 2.60 -68.87 -0.18 0.60 16 3 H 0.10 1.26 8.13 -51.93 -0.42 0.84 16 4 C 0.48 7.26 6.18 -10.99 -0.07 7.20 16 5 N -0.86 -8.60 8.76 31.22 0.27 -8.33 16 6 O -0.51 -10.57 11.90 5.56 0.07 -10.50 16 7 N -0.51 -9.37 5.17 -224.67 -1.16 -10.53 16 8 C 0.03 0.67 4.92 -2.30 -0.01 0.66 16 9 C -0.13 -2.99 5.44 -24.60 -0.13 -3.13 16 10 C 0.01 0.16 1.76 -89.95 -0.16 0.01 16 11 H 0.05 1.29 5.80 -51.93 -0.30 0.99 16 12 C -0.50 -14.99 9.05 -34.44 -0.31 -15.30 16 13 H 0.07 2.30 7.78 -52.49 -0.41 1.89 16 14 C 0.07 2.14 5.46 -17.82 -0.10 2.05 16 15 N -0.91 -28.92 13.96 55.43 0.77 -28.15 16 16 Si 0.88 23.38 24.80 -169.99 -4.22 19.17 16 17 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 18 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 19 H -0.26 -6.96 6.46 56.52 0.36 -6.60 16 20 C 0.06 1.39 5.64 -2.83 -0.02 1.37 16 21 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.06 0.69 7.32 -51.93 -0.38 0.31 16 23 H 0.06 0.43 7.57 -51.93 -0.39 0.03 16 24 H 0.39 3.67 8.93 -40.82 -0.36 3.31 16 25 H 0.40 2.52 8.26 -40.82 -0.34 2.18 16 26 H 0.06 1.19 5.26 -51.93 -0.27 0.91 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 1.66 8.04 -51.93 -0.42 1.24 16 29 H 0.05 1.15 5.59 -51.93 -0.29 0.86 16 30 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 31 H 0.07 1.67 7.63 -51.93 -0.40 1.27 16 32 H 0.03 0.73 6.92 -51.93 -0.36 0.37 16 LS Contribution 247.17 15.07 3.72 3.72 Total: -1.00 -34.88 247.17 -5.54 -40.42 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -4.36 Total: 1.85 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -0.64 Total: -7.64 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -0.11 Total: -47.00 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.07 Total: -10.50 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -4.22 Total: 19.17 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -34.88 -5.54 -40.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306767636.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.705 kcal (2) G-P(sol) polarization free energy of solvation -34.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds