Wall clock time and date at job start Mon Mar 30 2020 02:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47409 * 2 1 4 4 C 1.50696 * 109.47496 * 120.00313 * 2 1 3 5 5 N 1.34777 * 120.00076 * 300.00073 * 4 2 1 6 6 O 1.21281 * 120.00074 * 119.99575 * 4 2 1 7 7 N 1.46902 * 109.46697 * 240.00106 * 2 1 3 8 8 C 1.47847 * 111.00309 * 295.83950 * 7 2 1 9 9 C 1.54902 * 104.79513 * 213.63789 * 8 7 2 10 10 C 1.55133 * 101.65647 * 37.07185 * 9 8 7 11 11 H 1.08999 * 110.70973 * 82.72707 * 10 9 8 12 12 C 1.50701 * 110.70578 * 205.96191 * 10 9 8 13 13 H 1.07997 * 119.99905 * 113.60013 * 12 10 9 14 14 C 1.37879 * 120.00292 * 293.59602 * 12 10 9 15 15 N 1.31512 * 120.00108 * 180.02562 * 14 12 10 16 16 Si 1.86803 * 119.99597 * 0.02562 * 14 12 10 17 17 H 1.48496 * 109.47179 * 89.99694 * 16 14 12 18 18 H 1.48504 * 109.47022 * 209.99809 * 16 14 12 19 19 H 1.48504 * 109.47027 * 329.99632 * 16 14 12 20 20 C 1.47451 * 110.99853 * 174.99678 * 7 2 1 21 21 H 1.09002 * 109.47628 * 59.99408 * 1 2 3 22 22 H 1.09001 * 109.47409 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46660 * 299.99527 * 1 2 3 24 24 H 0.97001 * 120.00485 * 180.02562 * 5 4 2 25 25 H 0.97005 * 119.99790 * 359.72082 * 5 4 2 26 26 H 1.09001 * 110.37213 * 332.46845 * 8 7 2 27 27 H 1.09004 * 110.37055 * 94.80695 * 8 7 2 28 28 H 1.08999 * 110.99493 * 278.97361 * 9 8 7 29 29 H 1.09005 * 111.02184 * 155.18057 * 9 8 7 30 30 H 0.97006 * 119.99434 * 180.02562 * 15 14 12 31 31 H 1.08998 * 109.88848 * 242.66049 * 20 7 2 32 32 H 1.08999 * 109.88880 * 3.85740 * 20 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7068 -0.2501 2.4545 6 8 2.7296 -1.6965 1.1190 7 7 2.0195 -0.6925 -1.1995 8 6 1.6289 -2.1184 -1.1847 9 6 2.8000 -2.8565 -1.8798 10 6 4.0247 -2.0544 -1.3668 11 1 4.3273 -2.4026 -0.3792 12 6 5.1704 -2.1500 -2.3411 13 1 5.5023 -1.2702 -2.8724 14 6 5.7950 -3.3606 -2.5542 15 7 6.7952 -3.4438 -3.4041 16 14 5.2206 -4.8824 -1.6357 17 1 4.1668 -5.5688 -2.4254 18 1 6.3686 -5.8030 -1.4364 19 1 4.6697 -4.4850 -0.3151 20 6 3.4885 -0.6091 -1.2952 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 2.0305 -0.7071 3.2465 25 1 1.1524 0.5410 2.5436 26 1 1.5141 -2.4697 -0.1593 27 1 0.7039 -2.2642 -1.7425 28 1 2.7154 -2.7889 -2.9644 29 1 2.8521 -3.8969 -1.5586 30 1 7.2343 -4.2957 -3.5543 31 1 3.7711 -0.0638 -2.1956 32 1 3.8897 -0.1080 -0.4142 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306767636.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:46 Heat of formation + Delta-G solvation = -57.126775 kcal Electronic energy + Delta-G solvation = -14998.327690 eV Core-core repulsion = 12571.704467 eV Total energy + Delta-G solvation = -2426.623223 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.54901 -38.66420 -35.50099 -34.76694 -33.43680 -30.22597 -30.10609 -26.07917 -25.10270 -22.57776 -21.43875 -20.65229 -19.07249 -18.31180 -17.69417 -16.80712 -16.30526 -16.18333 -15.66957 -14.98620 -14.81763 -14.06497 -13.84076 -13.68890 -13.28545 -13.08317 -12.96726 -12.61832 -12.12368 -12.02099 -11.86212 -11.52368 -11.37576 -11.27926 -10.84127 -10.71865 -10.53768 -9.16147 -8.31732 -6.32672 1.26368 1.30294 1.44796 1.67022 2.32143 2.66451 3.03231 3.05995 3.96096 4.01690 4.08571 4.24572 4.36209 4.46046 4.56996 4.79842 4.88745 4.93389 4.99787 5.09639 5.27350 5.34134 5.36055 5.55101 5.74370 5.94694 6.04527 6.13608 6.31827 6.54641 6.72452 7.31987 7.43154 8.85138 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.046373 B = 0.010070 C = 0.009631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.654680 B = 2779.878493 C = 2906.485007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.050 3.950 3 H 0.125 0.875 4 C 0.476 3.524 5 N -0.834 5.834 6 O -0.575 6.575 7 N -0.505 5.505 8 C 0.047 3.953 9 C -0.129 4.129 10 C 0.005 3.995 11 H 0.025 0.975 12 C -0.511 4.511 13 H 0.038 0.962 14 C 0.017 3.983 15 N -0.949 5.949 16 Si 0.940 3.060 17 H -0.262 1.262 18 H -0.289 1.289 19 H -0.263 1.263 20 C 0.075 3.925 21 H 0.082 0.918 22 H 0.050 0.950 23 H 0.096 0.904 24 H 0.402 0.598 25 H 0.418 0.582 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.265 0.735 31 H 0.059 0.941 32 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.416 7.865 11.879 21.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.063 4.063 3 H 0.142 0.858 4 C 0.260 3.740 5 N -0.399 5.399 6 O -0.455 6.455 7 N -0.228 5.228 8 C -0.080 4.080 9 C -0.167 4.167 10 C -0.015 4.015 11 H 0.043 0.957 12 C -0.549 4.549 13 H 0.056 0.944 14 C -0.180 4.180 15 N -0.590 5.590 16 Si 0.766 3.234 17 H -0.187 1.187 18 H -0.216 1.216 19 H -0.187 1.187 20 C -0.053 4.053 21 H 0.101 0.899 22 H 0.069 0.931 23 H 0.115 0.885 24 H 0.232 0.768 25 H 0.249 0.751 26 H 0.077 0.923 27 H 0.104 0.896 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -16.115 7.421 11.102 20.929 hybrid contribution 0.843 -1.103 1.128 1.789 sum -15.272 6.318 12.231 20.561 Atomic orbital electron populations 1.21769 0.89349 1.02915 1.04714 1.22359 0.99451 0.99405 0.85080 0.85774 1.22345 0.79322 0.84733 0.87626 1.43819 1.55373 1.33717 1.07034 1.90842 1.39083 1.28379 1.87162 1.64013 1.11028 1.13380 1.34352 1.23076 0.97477 0.87377 1.00056 1.22853 0.96553 0.97689 0.99612 1.20129 0.92703 0.93708 0.94951 0.95683 1.21374 1.15180 0.95231 1.23163 0.94421 1.25740 0.94683 1.01946 0.95636 1.70040 1.24664 1.26693 1.37560 0.85915 0.77715 0.79493 0.80301 1.18740 1.21594 1.18749 1.22457 0.86596 0.97191 0.99013 0.89896 0.93078 0.88519 0.76753 0.75052 0.92324 0.89648 0.92421 0.94079 0.92564 0.92276 0.94406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 9.06 71.98 0.65 -1.49 16 2 C 0.05 1.23 2.60 44.17 0.11 1.35 16 3 H 0.12 2.57 8.13 -2.39 -0.02 2.55 16 4 C 0.48 13.19 6.18 87.66 0.54 13.73 16 5 N -0.83 -13.62 8.76 -173.53 -1.52 -15.15 16 6 O -0.58 -23.06 11.90 -3.03 -0.04 -23.09 16 7 N -0.50 -17.78 5.17 -864.74 -4.47 -22.25 16 8 C 0.05 1.77 4.92 86.77 0.43 2.19 16 9 C -0.13 -6.03 5.44 31.97 0.17 -5.86 16 10 C 0.00 0.25 1.76 -10.36 -0.02 0.23 16 11 H 0.03 1.43 5.80 -2.39 -0.01 1.41 16 12 C -0.51 -31.45 9.05 25.60 0.23 -31.22 16 13 H 0.04 2.51 7.78 -2.91 -0.02 2.48 16 14 C 0.02 1.05 5.46 84.66 0.46 1.51 16 15 N -0.95 -62.21 13.96 21.45 0.30 -61.91 16 16 Si 0.94 49.19 24.80 68.60 1.70 50.89 16 17 H -0.26 -12.95 7.11 99.48 0.71 -12.25 16 18 H -0.29 -14.72 7.11 99.48 0.71 -14.02 16 19 H -0.26 -13.78 6.46 99.48 0.64 -13.14 16 20 C 0.08 3.29 5.64 86.65 0.49 3.78 16 21 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.05 0.96 7.32 -2.39 -0.02 0.95 16 23 H 0.10 0.86 7.57 -2.39 -0.02 0.84 16 24 H 0.40 6.21 8.93 -92.71 -0.83 5.39 16 25 H 0.42 3.31 8.26 -92.70 -0.77 2.55 16 26 H 0.06 2.24 5.26 -2.39 -0.01 2.23 16 27 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 28 H 0.06 2.78 8.04 -2.39 -0.02 2.76 16 29 H 0.04 1.94 5.59 -2.38 -0.01 1.93 16 30 H 0.27 16.27 8.31 -92.70 -0.77 15.50 16 31 H 0.06 2.72 7.63 -2.39 -0.02 2.71 16 32 H 0.04 1.59 6.92 -2.39 -0.02 1.58 16 Total: -1.00 -78.36 247.17 -1.47 -79.83 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -0.52 Total: 7.46 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: 3.07 Total: -15.77 kcal Atomic # 7 Polarization: -93.62 SS G_CDS: -5.69 Total: -99.31 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.04 Total: -23.09 kcal Atomic # 14 Polarization: 49.19 SS G_CDS: 1.70 Total: 50.89 kcal Total: -78.36 -1.47 -79.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306767636.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.701 kcal (2) G-P(sol) polarization free energy of solvation -78.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds