Wall clock time and date at job start Mon Mar 30 2020 02:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47048 * 2 1 4 4 C 1.50698 * 109.47466 * 119.99897 * 2 1 3 5 5 N 1.34777 * 120.00300 * 300.00419 * 4 2 1 6 6 O 1.21286 * 119.99767 * 119.99875 * 4 2 1 7 7 N 1.46897 * 109.47040 * 240.00307 * 2 1 3 8 8 C 1.48813 * 111.18681 * 57.66215 * 7 2 1 9 9 C 1.54933 * 103.35205 * 159.50572 * 8 7 2 10 10 C 1.54594 * 102.91997 * 322.69117 * 9 8 7 11 11 H 1.09011 * 110.39051 * 262.99616 * 10 9 8 12 12 C 1.50696 * 110.30989 * 140.87684 * 10 9 8 13 13 H 1.08005 * 119.99925 * 244.28300 * 12 10 9 14 14 C 1.37874 * 120.00428 * 64.28222 * 12 10 9 15 15 N 1.31514 * 119.99877 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 120.00237 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47441 * 59.99246 * 16 14 12 18 18 H 1.48502 * 109.47254 * 179.97438 * 16 14 12 19 19 H 1.48508 * 109.46917 * 299.99795 * 16 14 12 20 20 C 1.47905 * 111.00050 * 174.99549 * 7 2 1 21 21 H 1.09006 * 109.46694 * 299.99592 * 1 2 3 22 22 H 1.08995 * 109.47418 * 59.99802 * 1 2 3 23 23 H 1.08998 * 109.46901 * 180.02562 * 1 2 3 24 24 H 0.97002 * 119.99952 * 359.97438 * 5 4 2 25 25 H 0.96994 * 120.00144 * 179.97438 * 5 4 2 26 26 H 1.08998 * 110.51915 * 41.07024 * 8 7 2 27 27 H 1.09004 * 110.69711 * 278.02347 * 8 7 2 28 28 H 1.08999 * 110.72416 * 204.32980 * 9 8 7 29 29 H 1.08999 * 110.72531 * 81.04521 * 9 8 7 30 30 H 0.97006 * 120.00195 * 180.02562 * 15 14 12 31 31 H 1.09002 * 109.91668 * 94.80258 * 20 7 2 32 32 H 1.09002 * 109.91761 * 333.70433 * 20 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7069 -0.2500 2.4546 6 8 2.7297 -1.6965 1.1191 7 7 2.0197 -0.6924 -1.1995 8 6 1.4992 -0.0543 -2.4390 9 6 2.4907 -0.5306 -3.5301 10 6 3.8486 -0.5209 -2.7912 11 1 4.3872 0.4039 -2.9985 12 6 4.6765 -1.7108 -3.2029 13 1 4.9333 -2.4675 -2.4762 14 6 5.1064 -1.8337 -4.5071 15 7 4.7942 -0.9121 -5.3919 16 14 6.1321 -3.3090 -5.0175 17 1 5.3620 -4.5553 -4.7747 18 1 6.4635 -3.2058 -6.4614 19 1 7.3859 -3.3391 -4.2223 20 6 3.4932 -0.6087 -1.2954 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.1494 0.5389 2.5436 25 1 2.0299 -0.7074 3.2465 26 1 1.5203 1.0316 -2.3475 27 1 0.4899 -0.4034 -2.6574 28 1 2.5034 0.1644 -4.3696 29 1 2.2411 -1.5373 -3.8651 30 1 5.0963 -0.9986 -6.3096 31 1 3.9450 -1.4991 -0.8581 32 1 3.8492 0.2812 -0.7763 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306767639.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:52 Heat of formation + Delta-G solvation = -64.641890 kcal Electronic energy + Delta-G solvation = -14582.812373 eV Core-core repulsion = 12155.863270 eV Total energy + Delta-G solvation = -2426.949103 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.00029 -39.02343 -35.53282 -34.69123 -33.21496 -30.00629 -29.81524 -26.21407 -25.27143 -22.18074 -21.27068 -20.81071 -18.66294 -18.33749 -17.65595 -16.64230 -16.35039 -16.17798 -15.57362 -14.99453 -14.52014 -14.03008 -13.64969 -13.54276 -13.09676 -12.98894 -12.91034 -12.62314 -12.39394 -12.24666 -11.94916 -11.56589 -11.19540 -10.86066 -10.73505 -10.58430 -10.49863 -9.20619 -8.14023 -6.21760 1.39129 1.41523 1.49432 1.71362 2.43283 2.51353 3.14520 3.21462 3.96289 4.04979 4.17398 4.23033 4.44451 4.45933 4.57781 4.77243 4.88856 4.95807 5.03488 5.26566 5.32439 5.39687 5.54065 5.73921 5.85006 5.96615 6.15529 6.20928 6.39797 6.59896 6.84737 7.43862 7.46493 8.95442 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.047112 B = 0.008294 C = 0.007396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.181044 B = 3375.193220 C = 3784.733316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.047 3.953 3 H 0.079 0.921 4 C 0.515 3.485 5 N -0.833 5.833 6 O -0.577 6.577 7 N -0.514 5.514 8 C 0.046 3.954 9 C -0.085 4.085 10 C 0.030 3.970 11 H 0.003 0.997 12 C -0.530 4.530 13 H 0.042 0.958 14 C 0.015 3.985 15 N -0.917 5.917 16 Si 0.953 3.047 17 H -0.275 1.275 18 H -0.277 1.277 19 H -0.273 1.273 20 C 0.068 3.932 21 H 0.099 0.901 22 H 0.078 0.922 23 H 0.055 0.945 24 H 0.418 0.582 25 H 0.407 0.593 26 H 0.053 0.947 27 H 0.093 0.907 28 H 0.047 0.953 29 H 0.034 0.966 30 H 0.262 0.738 31 H 0.050 0.950 32 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.558 6.131 12.191 17.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.065 4.065 3 H 0.097 0.903 4 C 0.299 3.701 5 N -0.399 5.399 6 O -0.455 6.455 7 N -0.240 5.240 8 C -0.081 4.081 9 C -0.124 4.124 10 C 0.011 3.989 11 H 0.021 0.979 12 C -0.568 4.568 13 H 0.060 0.940 14 C -0.184 4.184 15 N -0.557 5.557 16 Si 0.778 3.222 17 H -0.200 1.200 18 H -0.202 1.202 19 H -0.198 1.198 20 C -0.060 4.060 21 H 0.118 0.882 22 H 0.097 0.903 23 H 0.074 0.926 24 H 0.250 0.750 25 H 0.239 0.761 26 H 0.072 0.928 27 H 0.111 0.889 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -10.289 5.044 11.810 16.455 hybrid contribution 1.106 0.171 -0.194 1.136 sum -9.183 5.216 11.616 15.699 Atomic orbital electron populations 1.21818 0.89360 1.03206 1.04659 1.21981 0.99272 0.96147 0.89113 0.90308 1.20838 0.79027 0.83877 0.86341 1.43581 1.55667 1.34045 1.06591 1.90762 1.39140 1.28272 1.87373 1.64608 1.06662 1.51296 1.01401 1.23325 0.99046 0.96677 0.89043 1.22164 0.95092 0.98852 0.96297 1.19500 0.93774 0.95217 0.90364 0.97860 1.21459 1.32912 1.07367 0.95043 0.93966 1.25697 0.97218 0.98903 0.96581 1.70054 1.46906 1.35288 1.03414 0.85700 0.79237 0.80014 0.77245 1.20040 1.20219 1.19825 1.22700 0.87836 0.98129 0.97303 0.88221 0.90345 0.92595 0.75044 0.76125 0.92842 0.88914 0.93413 0.94718 0.92906 0.93191 0.96075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 8.89 71.98 0.64 -1.95 16 2 C 0.05 1.34 2.20 44.17 0.10 1.43 16 3 H 0.08 1.98 7.96 -2.38 -0.02 1.96 16 4 C 0.51 15.53 7.19 87.66 0.63 16.16 16 5 N -0.83 -14.40 8.77 -173.53 -1.52 -15.92 16 6 O -0.58 -24.62 15.54 -3.05 -0.05 -24.67 16 7 N -0.51 -20.43 4.86 -861.46 -4.19 -24.61 16 8 C 0.05 1.70 5.33 86.59 0.46 2.16 16 9 C -0.09 -4.16 5.75 31.80 0.18 -3.98 16 10 C 0.03 1.65 2.87 -10.66 -0.03 1.62 16 11 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 12 C -0.53 -31.86 8.37 25.60 0.21 -31.65 16 13 H 0.04 2.60 7.34 -2.91 -0.02 2.58 16 14 C 0.01 0.87 5.34 84.65 0.45 1.32 16 15 N -0.92 -54.99 12.63 21.45 0.27 -54.72 16 16 Si 0.95 46.37 29.54 68.60 2.03 48.40 16 17 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 19 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 20 C 0.07 3.24 5.20 86.44 0.45 3.69 16 21 H 0.10 1.11 7.57 -2.38 -0.02 1.09 16 22 H 0.08 1.42 6.90 -2.39 -0.02 1.40 16 23 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.42 3.75 8.25 -92.71 -0.76 2.99 16 25 H 0.41 6.23 8.93 -92.71 -0.83 5.40 16 26 H 0.05 1.73 8.02 -2.39 -0.02 1.71 16 27 H 0.09 2.95 7.68 -2.38 -0.02 2.94 16 28 H 0.05 2.39 8.12 -2.39 -0.02 2.37 16 29 H 0.03 1.84 7.86 -2.39 -0.02 1.82 16 30 H 0.26 14.87 8.31 -92.70 -0.77 14.10 16 31 H 0.05 2.71 6.40 -2.39 -0.02 2.70 16 32 H 0.02 0.93 7.65 -2.39 -0.02 0.91 16 Total: -1.00 -75.51 261.08 -0.83 -76.34 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -0.46 Total: 6.38 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 3.10 Total: -11.20 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -5.44 Total: -95.25 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.05 Total: -24.67 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -75.51 -0.83 -76.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306767639.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.698 kcal (2) G-P(sol) polarization free energy of solvation -75.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds