Wall clock time and date at job start Mon Mar 30 2020 02:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.46902 * 2 1 4 4 C 1.34778 * 119.99896 * 179.97438 * 3 2 1 5 5 O 1.21587 * 119.99851 * 0.02562 * 4 3 2 6 6 N 1.34769 * 120.00222 * 179.97438 * 4 3 2 7 7 C 1.47425 * 125.64784 * 359.97438 * 6 4 3 8 8 C 1.54912 * 104.83356 * 155.90366 * 7 6 4 9 9 C 1.55158 * 101.58275 * 37.00891 * 8 7 6 10 10 H 1.08997 * 110.72014 * 83.03282 * 9 8 7 11 11 C 1.50695 * 110.71827 * 206.13571 * 9 8 7 12 12 H 1.07999 * 120.00538 * 357.55387 * 11 9 8 13 13 C 1.37881 * 119.99661 * 177.55735 * 11 9 8 14 14 N 1.31520 * 120.00186 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 120.00030 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.47297 * 89.99863 * 15 13 11 17 17 H 1.48503 * 109.47261 * 330.00044 * 15 13 11 18 18 H 1.48500 * 109.47454 * 210.00037 * 15 13 11 19 19 C 1.47327 * 125.61818 * 180.19722 * 6 4 3 20 20 H 1.08996 * 109.46864 * 60.00118 * 1 2 3 21 21 H 1.09006 * 109.47250 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47306 * 299.99845 * 1 2 3 23 23 H 1.08996 * 109.46942 * 239.99487 * 2 1 3 24 24 H 1.09006 * 109.46798 * 120.00030 * 2 1 3 25 25 H 0.96997 * 120.00370 * 0.02562 * 3 2 1 26 26 H 1.08997 * 110.37105 * 37.06469 * 7 6 4 27 27 H 1.09002 * 110.45965 * 274.78839 * 7 6 4 28 28 H 1.08996 * 111.00290 * 278.93313 * 8 7 6 29 29 H 1.09001 * 111.03865 * 155.09747 * 8 7 6 30 30 H 0.97001 * 119.99697 * 359.97438 * 14 13 11 31 31 H 1.08996 * 110.06005 * 61.68368 * 19 6 4 32 32 H 1.08998 * 109.84793 * 300.42360 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1335 0.7033 0.0005 6 7 3.7926 2.8981 0.0000 7 6 2.9496 4.1075 -0.0017 8 6 3.8436 5.2150 0.6097 9 6 5.2342 4.8505 0.0259 10 1 5.3476 5.2535 -0.9805 11 6 6.3368 5.3479 0.9247 12 1 6.0959 5.9120 1.8136 13 6 7.6533 5.0827 0.6122 14 7 7.9467 4.3954 -0.4700 15 14 9.0201 5.6998 1.7259 16 1 9.3181 4.6749 2.7584 17 1 8.5900 6.9580 2.3870 18 1 10.2391 5.9571 0.9177 19 6 5.2078 3.3078 -0.0037 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 1.3880 2.1185 0.0004 26 1 2.0632 3.9530 0.6135 27 1 2.6627 4.3706 -1.0198 28 1 3.8492 5.1562 1.6981 29 1 3.5264 6.2029 0.2756 30 1 7.2369 4.0746 -1.0481 31 1 5.6995 2.9458 -0.9065 32 1 5.7101 2.9115 0.8788 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306800851.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:55 Heat of formation + Delta-G solvation = -40.915523 kcal Electronic energy + Delta-G solvation = -14334.870346 eV Core-core repulsion = 11908.950096 eV Total energy + Delta-G solvation = -2425.920250 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.66521 -37.13133 -34.93295 -33.25675 -30.96536 -29.62901 -27.83007 -24.79570 -23.02308 -22.15179 -20.10407 -19.42711 -17.71647 -16.67938 -15.93058 -15.57984 -14.79353 -14.12482 -13.75820 -13.66438 -13.17007 -12.71146 -12.37380 -12.21564 -11.86508 -11.78197 -11.52338 -11.24509 -10.81978 -10.73420 -10.11179 -10.05897 -9.67768 -9.62724 -8.87400 -8.62228 -8.43329 -7.85592 -6.38799 -4.13632 3.09406 3.44361 3.47125 3.62451 3.68352 4.38554 4.52385 4.95107 5.03919 5.25974 5.29919 5.33485 5.61342 5.70585 5.72914 5.89288 5.89924 6.04194 6.28534 6.56290 6.68457 6.74021 6.77182 6.90380 7.09720 7.47449 7.55139 8.12860 8.35917 8.48721 8.81296 9.07000 9.58648 10.98898 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.057056 B = 0.007101 C = 0.006652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.624552 B = 3942.430372 C = 4208.433724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 N -0.753 5.753 4 C 0.713 3.287 5 O -0.596 6.596 6 N -0.633 5.633 7 C 0.100 3.900 8 C -0.118 4.118 9 C 0.027 3.973 10 H 0.032 0.968 11 C -0.596 4.596 12 H 0.054 0.946 13 C 0.021 3.979 14 N -0.906 5.906 15 Si 1.072 2.928 16 H -0.287 1.287 17 H -0.288 1.288 18 H -0.284 1.284 19 C 0.131 3.869 20 H 0.059 0.941 21 H 0.072 0.928 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.392 0.608 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.272 0.728 31 H 0.050 0.950 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.125 -2.482 0.877 14.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.009 3.991 3 N -0.411 5.411 4 C 0.415 3.585 5 O -0.475 6.475 6 N -0.370 5.370 7 C -0.023 4.023 8 C -0.157 4.157 9 C 0.008 3.992 10 H 0.050 0.950 11 C -0.635 4.635 12 H 0.073 0.927 13 C -0.185 4.185 14 N -0.541 5.541 15 Si 0.900 3.100 16 H -0.214 1.214 17 H -0.214 1.214 18 H -0.209 1.209 19 C 0.009 3.991 20 H 0.079 0.921 21 H 0.091 0.909 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.226 0.774 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.897 -3.237 1.053 12.374 hybrid contribution -2.073 0.260 -0.218 2.100 sum -13.970 -2.977 0.835 14.308 Atomic orbital electron populations 1.21998 0.94838 1.02877 1.02326 1.21064 0.93375 0.82523 1.02103 1.45209 1.05610 1.08482 1.81805 1.15576 0.82191 0.82516 0.78238 1.90891 1.55000 1.42827 1.58774 1.48073 1.09709 1.02859 1.76352 1.22252 0.93903 0.86511 0.99665 1.22725 0.96545 0.95946 1.00439 1.19917 0.92654 0.89494 0.97154 0.95002 1.21892 0.91889 1.38804 1.10866 0.92722 1.25891 0.99524 0.94782 0.98273 1.70790 1.37236 1.33410 1.12696 0.83490 0.75422 0.75932 0.75119 1.21376 1.21441 1.20942 1.22630 0.77485 0.98097 1.00862 0.92147 0.90938 0.92131 0.91959 0.91956 0.77388 0.92494 0.92493 0.91377 0.91441 0.91633 0.93212 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 10.03 37.16 0.37 -0.99 16 2 C 0.13 1.69 6.39 -4.04 -0.03 1.67 16 3 N -0.75 -11.39 5.52 -65.23 -0.36 -11.75 16 4 C 0.71 14.77 8.49 -86.92 -0.74 14.03 16 5 O -0.60 -14.87 16.67 5.29 0.09 -14.78 16 6 N -0.63 -13.18 3.33 -175.99 -0.59 -13.77 16 7 C 0.10 1.67 6.57 -2.53 -0.02 1.66 16 8 C -0.12 -2.28 6.50 -24.58 -0.16 -2.44 16 9 C 0.03 0.66 2.46 -89.94 -0.22 0.44 16 10 H 0.03 0.81 8.00 -51.93 -0.42 0.40 16 11 C -0.60 -16.25 8.38 -34.44 -0.29 -16.54 16 12 H 0.05 1.47 7.77 -52.49 -0.41 1.06 16 13 C 0.02 0.58 5.34 -17.82 -0.10 0.49 16 14 N -0.91 -27.15 13.45 55.43 0.75 -26.40 16 15 Si 1.07 24.97 29.90 -169.99 -5.08 19.89 16 16 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C 0.13 3.25 5.48 -2.90 -0.02 3.23 16 20 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 21 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.39 4.82 6.95 -40.82 -0.28 4.54 16 26 H 0.06 0.77 7.30 -51.93 -0.38 0.39 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.34 8.03 -51.93 -0.42 0.92 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.27 8.10 5.63 -40.82 -0.23 7.87 16 31 H 0.05 1.32 7.01 -51.93 -0.36 0.95 16 32 H 0.06 1.76 7.81 -51.93 -0.41 1.35 16 LS Contribution 265.36 15.07 4.00 4.00 Total: -1.00 -32.83 265.36 -7.04 -39.87 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -4.66 Total: 1.40 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -1.19 Total: 1.55 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: -0.20 Total: -51.92 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.09 Total: -14.78 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.08 Total: 19.89 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.83 -7.04 -39.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306800851.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.046 kcal (2) G-P(sol) polarization free energy of solvation -32.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds