Wall clock time and date at job start Mon Mar 30 2020 02:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.46902 * 2 1 4 4 C 1.34778 * 119.99896 * 179.97438 * 3 2 1 5 5 O 1.21587 * 119.99851 * 0.02562 * 4 3 2 6 6 N 1.34769 * 120.00222 * 179.97438 * 4 3 2 7 7 C 1.47425 * 125.64784 * 359.97438 * 6 4 3 8 8 C 1.54912 * 104.83356 * 155.90366 * 7 6 4 9 9 C 1.55158 * 101.58275 * 37.00891 * 8 7 6 10 10 H 1.08997 * 110.72014 * 83.03282 * 9 8 7 11 11 C 1.50695 * 110.71827 * 206.13571 * 9 8 7 12 12 H 1.07999 * 120.00538 * 357.55387 * 11 9 8 13 13 C 1.37881 * 119.99661 * 177.55735 * 11 9 8 14 14 N 1.31520 * 120.00186 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 120.00030 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.47297 * 89.99863 * 15 13 11 17 17 H 1.48503 * 109.47261 * 330.00044 * 15 13 11 18 18 H 1.48500 * 109.47454 * 210.00037 * 15 13 11 19 19 C 1.47327 * 125.61818 * 180.19722 * 6 4 3 20 20 H 1.08996 * 109.46864 * 60.00118 * 1 2 3 21 21 H 1.09006 * 109.47250 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47306 * 299.99845 * 1 2 3 23 23 H 1.08996 * 109.46942 * 239.99487 * 2 1 3 24 24 H 1.09006 * 109.46798 * 120.00030 * 2 1 3 25 25 H 0.96997 * 120.00370 * 0.02562 * 3 2 1 26 26 H 1.08997 * 110.37105 * 37.06469 * 7 6 4 27 27 H 1.09002 * 110.45965 * 274.78839 * 7 6 4 28 28 H 1.08996 * 111.00290 * 278.93313 * 8 7 6 29 29 H 1.09001 * 111.03865 * 155.09747 * 8 7 6 30 30 H 0.97001 * 119.99697 * 359.97438 * 14 13 11 31 31 H 1.08996 * 110.06005 * 61.68368 * 19 6 4 32 32 H 1.08998 * 109.84793 * 300.42360 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1335 0.7033 0.0005 6 7 3.7926 2.8981 0.0000 7 6 2.9496 4.1075 -0.0017 8 6 3.8436 5.2150 0.6097 9 6 5.2342 4.8505 0.0259 10 1 5.3476 5.2535 -0.9805 11 6 6.3368 5.3479 0.9247 12 1 6.0959 5.9120 1.8136 13 6 7.6533 5.0827 0.6122 14 7 7.9467 4.3954 -0.4700 15 14 9.0201 5.6998 1.7259 16 1 9.3181 4.6749 2.7584 17 1 8.5900 6.9580 2.3870 18 1 10.2391 5.9571 0.9177 19 6 5.2078 3.3078 -0.0037 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 1.3880 2.1185 0.0004 26 1 2.0632 3.9530 0.6135 27 1 2.6627 4.3706 -1.0198 28 1 3.8492 5.1562 1.6981 29 1 3.5264 6.2029 0.2756 30 1 7.2369 4.0746 -1.0481 31 1 5.6995 2.9458 -0.9065 32 1 5.7101 2.9115 0.8788 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306800851.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:55 Heat of formation + Delta-G solvation = -64.316783 kcal Electronic energy + Delta-G solvation = -14335.885101 eV Core-core repulsion = 11908.950096 eV Total energy + Delta-G solvation = -2426.935005 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.28445 -38.81783 -36.29883 -35.24351 -32.56195 -30.91916 -29.57049 -26.76537 -24.47671 -23.42342 -21.86587 -21.05147 -19.41949 -18.57450 -17.46586 -17.07591 -16.17067 -15.65213 -15.52846 -15.15892 -14.93020 -14.14343 -13.99917 -13.70242 -13.28231 -13.11994 -12.72622 -12.62094 -12.47049 -12.38731 -11.92313 -11.85801 -11.44752 -11.40294 -10.65776 -10.57811 -10.30453 -9.50787 -8.62152 -6.37570 1.54353 1.58406 1.65274 1.79915 2.04741 2.58049 3.04130 3.17393 3.83446 4.01231 4.16136 4.21467 4.26819 4.37674 4.50821 4.53881 4.71590 4.90883 4.95352 5.03870 5.06482 5.15460 5.23872 5.31226 5.48525 5.53671 6.01393 6.08874 6.18958 6.59396 6.99070 7.43794 7.48655 8.75817 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.057056 B = 0.007101 C = 0.006652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.624552 B = 3942.430372 C = 4208.433724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.127 3.873 3 N -0.728 5.728 4 C 0.705 3.295 5 O -0.649 6.649 6 N -0.638 5.638 7 C 0.103 3.897 8 C -0.109 4.109 9 C 0.017 3.983 10 H 0.016 0.984 11 C -0.604 4.604 12 H 0.058 0.942 13 C -0.033 4.033 14 N -0.937 5.937 15 Si 1.117 2.883 16 H -0.281 1.281 17 H -0.263 1.263 18 H -0.285 1.285 19 C 0.150 3.850 20 H 0.072 0.928 21 H 0.090 0.910 22 H 0.072 0.928 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.411 0.589 26 H 0.102 0.898 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.259 0.741 31 H 0.017 0.983 32 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.761 -1.560 1.679 16.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.003 3.997 3 N -0.387 5.387 4 C 0.407 3.593 5 O -0.531 6.531 6 N -0.375 5.375 7 C -0.018 4.018 8 C -0.147 4.147 9 C -0.003 4.003 10 H 0.034 0.966 11 C -0.642 4.642 12 H 0.076 0.924 13 C -0.231 4.231 14 N -0.575 5.575 15 Si 0.939 3.061 16 H -0.207 1.207 17 H -0.187 1.187 18 H -0.210 1.210 19 C 0.026 3.974 20 H 0.091 0.909 21 H 0.109 0.891 22 H 0.091 0.909 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.248 0.752 26 H 0.120 0.880 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.113 0.887 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -14.636 -2.285 1.859 14.929 hybrid contribution -1.317 -0.061 -0.476 1.401 sum -15.952 -2.346 1.382 16.183 Atomic orbital electron populations 1.21939 0.90761 1.04516 1.03464 1.21314 0.96530 0.80793 1.01063 1.45078 1.03503 1.10328 1.79747 1.15875 0.83684 0.81727 0.78051 1.90850 1.56889 1.44415 1.60981 1.48008 1.08591 1.04406 1.76488 1.22497 0.93959 0.83529 1.01837 1.22673 0.93530 0.98368 1.00131 1.19888 0.95349 0.88829 0.96208 0.96632 1.22307 0.92858 1.37977 1.11059 0.92404 1.27320 1.02688 0.94413 0.98714 1.70905 1.36885 1.35588 1.14093 0.82937 0.72876 0.76613 0.73714 1.20722 1.18720 1.21040 1.22041 0.79730 0.98325 0.97273 0.90949 0.89100 0.90945 0.93097 0.93133 0.75208 0.88002 0.90144 0.91723 0.88673 0.93012 0.96425 0.95957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 10.03 71.98 0.72 -1.22 16 2 C 0.13 2.98 6.39 86.38 0.55 3.53 16 3 N -0.73 -20.40 5.52 -478.54 -2.64 -23.04 16 4 C 0.70 28.99 8.49 179.06 1.52 30.51 16 5 O -0.65 -33.37 16.67 -3.99 -0.07 -33.44 16 6 N -0.64 -26.27 3.33 -828.99 -2.76 -29.04 16 7 C 0.10 3.11 6.57 86.86 0.57 3.68 16 8 C -0.11 -3.94 6.50 31.99 0.21 -3.73 16 9 C 0.02 0.81 2.46 -10.35 -0.03 0.79 16 10 H 0.02 0.81 8.00 -2.39 -0.02 0.79 16 11 C -0.60 -33.22 8.38 25.60 0.21 -33.01 16 12 H 0.06 3.08 7.77 -2.91 -0.02 3.05 16 13 C -0.03 -1.87 5.34 84.65 0.45 -1.42 16 14 N -0.94 -58.29 13.45 21.45 0.29 -58.00 16 15 Si 1.12 50.44 29.90 68.60 2.05 52.49 16 16 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 17 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 19 C 0.15 7.74 5.48 86.67 0.48 8.21 16 20 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 21 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 22 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 25 H 0.41 8.43 6.95 -92.71 -0.64 7.79 16 26 H 0.10 2.22 7.30 -2.39 -0.02 2.20 16 27 H 0.08 2.11 8.14 -2.39 -0.02 2.10 16 28 H 0.06 2.38 8.03 -2.39 -0.02 2.36 16 29 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.26 16.31 5.63 -92.71 -0.52 15.79 16 31 H 0.02 0.99 7.01 -2.39 -0.02 0.97 16 32 H 0.02 1.29 7.81 -2.39 -0.02 1.27 16 Total: -1.00 -75.34 265.36 2.27 -73.08 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.71 Total: 10.59 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 4.69 Total: 7.35 kcal Atomic # 7 Polarization: -104.96 SS G_CDS: -5.11 Total: -110.07 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -0.07 Total: -33.44 kcal Atomic # 14 Polarization: 50.44 SS G_CDS: 2.05 Total: 52.49 kcal Total: -75.34 2.27 -73.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306800851.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.761 kcal (2) G-P(sol) polarization free energy of solvation -75.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds