Wall clock time and date at job start Mon Mar 30 2020 02:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 C 1.34779 * 120.00488 * 180.02562 * 3 2 1 5 5 O 1.21591 * 119.99599 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00454 * 180.02562 * 4 3 2 7 7 C 1.47426 * 125.64578 * 0.02562 * 6 4 3 8 8 C 1.54909 * 104.82985 * 204.09210 * 7 6 4 9 9 C 1.55160 * 101.58396 * 322.99176 * 8 7 6 10 10 H 1.09005 * 110.71739 * 277.13808 * 9 8 7 11 11 C 1.50700 * 110.71838 * 154.04308 * 9 8 7 12 12 H 1.07994 * 119.99903 * 0.02562 * 11 9 8 13 13 C 1.37876 * 119.99371 * 180.02562 * 11 9 8 14 14 N 1.31511 * 120.00861 * 359.97438 * 13 11 9 15 15 Si 1.86809 * 119.99742 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46874 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47035 * 119.99881 * 15 13 11 18 18 H 1.48492 * 109.47138 * 240.00058 * 15 13 11 19 19 C 1.47023 * 125.64943 * 179.71310 * 6 4 3 20 20 H 1.09002 * 109.47153 * 299.99573 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99745 * 1 2 3 23 23 H 1.08996 * 109.47853 * 120.00399 * 2 1 3 24 24 H 1.09002 * 109.47153 * 240.00427 * 2 1 3 25 25 H 0.97003 * 119.99956 * 0.02562 * 3 2 1 26 26 H 1.08994 * 110.37113 * 322.93135 * 7 6 4 27 27 H 1.09001 * 110.36428 * 85.14894 * 7 6 4 28 28 H 1.08999 * 111.00592 * 81.06906 * 8 7 6 29 29 H 1.09004 * 111.00663 * 204.91648 * 8 7 6 30 30 H 0.96996 * 120.00693 * 179.97438 * 14 13 11 31 31 H 1.08991 * 109.88513 * 298.39423 * 19 6 4 32 32 H 1.09007 * 109.87911 * 59.56372 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6276 -0.0005 5 8 4.1335 0.7034 -0.0005 6 7 3.7926 2.8982 0.0000 7 6 2.9495 4.1076 0.0017 8 6 3.8436 5.2151 -0.6096 9 6 5.2342 4.8506 -0.0257 10 1 5.3463 5.2510 0.9819 11 6 6.3369 5.3518 -0.9223 12 1 6.0948 5.8843 -1.8300 13 6 7.6549 5.1304 -0.5834 14 7 7.9499 4.4824 0.5223 15 14 9.0220 5.7510 -1.6951 16 1 8.4302 6.4440 -2.8676 17 1 9.8806 6.6997 -0.9414 18 1 9.8417 4.6032 -2.1596 19 6 5.2046 3.3079 0.0055 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.3880 2.1185 0.0004 26 1 2.0632 3.9530 -0.6135 27 1 2.6626 4.3686 1.0204 28 1 3.8493 5.1563 -1.6980 29 1 3.5261 6.2027 -0.2750 30 1 8.8771 4.3263 0.7604 31 1 5.6927 2.9440 0.9096 32 1 5.7090 2.9114 -0.8758 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306800852.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:58 Heat of formation + Delta-G solvation = -60.973167 kcal Electronic energy + Delta-G solvation = -14282.032649 eV Core-core repulsion = 11855.242634 eV Total energy + Delta-G solvation = -2426.790015 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.16577 -38.60113 -36.22615 -34.94768 -32.61155 -30.84345 -29.72061 -26.83501 -24.46716 -23.35506 -21.53578 -20.96909 -18.99877 -18.41823 -17.33853 -16.94516 -16.46919 -15.92928 -15.45646 -14.94812 -14.33934 -14.25170 -13.83176 -13.47330 -13.25548 -13.12612 -12.84156 -12.63890 -12.45995 -12.33826 -12.30961 -11.67617 -11.31380 -11.12903 -11.01969 -10.60423 -10.22510 -9.36427 -8.18339 -6.29476 1.40846 1.43593 1.54775 1.72900 2.14311 2.42336 3.13061 3.16299 3.98105 4.12377 4.25668 4.29402 4.40285 4.55308 4.63443 4.66259 4.95077 4.96613 5.09422 5.16788 5.23836 5.25777 5.31878 5.54087 5.55782 5.67336 5.86403 6.17999 6.29422 6.81765 7.10275 7.40543 7.58209 8.91856 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.057282 B = 0.007031 C = 0.006595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.696495 B = 3981.390173 C = 4244.820090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.127 3.873 3 N -0.730 5.730 4 C 0.704 3.296 5 O -0.650 6.650 6 N -0.639 5.639 7 C 0.103 3.897 8 C -0.116 4.116 9 C 0.036 3.964 10 H 0.019 0.981 11 C -0.529 4.529 12 H 0.067 0.933 13 C 0.010 3.990 14 N -0.923 5.923 15 Si 0.959 3.041 16 H -0.259 1.259 17 H -0.277 1.277 18 H -0.288 1.288 19 C 0.162 3.838 20 H 0.071 0.929 21 H 0.090 0.910 22 H 0.071 0.929 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.410 0.590 26 H 0.099 0.901 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.262 0.738 31 H 0.017 0.983 32 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.137 -1.809 -1.423 16.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.003 3.997 3 N -0.388 5.388 4 C 0.406 3.594 5 O -0.533 6.533 6 N -0.376 5.376 7 C -0.018 4.018 8 C -0.154 4.154 9 C 0.017 3.983 10 H 0.037 0.963 11 C -0.567 4.567 12 H 0.085 0.915 13 C -0.190 4.190 14 N -0.562 5.562 15 Si 0.784 3.216 16 H -0.183 1.183 17 H -0.203 1.203 18 H -0.214 1.214 19 C 0.038 3.962 20 H 0.090 0.910 21 H 0.108 0.892 22 H 0.090 0.910 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.247 0.753 26 H 0.117 0.883 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.113 0.887 30 H 0.071 0.929 31 H 0.035 0.965 32 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -15.485 -2.621 -1.319 15.761 hybrid contribution 1.224 0.258 -0.219 1.270 sum -14.262 -2.362 -1.538 14.538 Atomic orbital electron populations 1.21936 0.90836 1.04449 1.03448 1.21291 0.96463 0.80923 1.00984 1.45079 1.03616 1.10222 1.79915 1.15880 0.83581 0.81850 0.78087 1.90839 1.56903 1.44490 1.61115 1.48028 1.09115 1.04264 1.76188 1.22484 0.93963 0.83729 1.01666 1.22772 0.94256 0.98225 1.00146 1.19689 0.93672 0.88789 0.96180 0.96253 1.21468 0.91106 1.36087 1.08070 0.91527 1.25898 1.01635 0.95059 0.96392 1.70095 1.19181 1.41809 1.25089 0.85489 0.78966 0.77897 0.79247 1.18310 1.20306 1.21385 1.21752 0.78713 0.98425 0.97293 0.90974 0.89170 0.90953 0.93200 0.93183 0.75255 0.88253 0.90406 0.91647 0.88734 0.92918 0.96480 0.96299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 10.03 71.98 0.72 -1.27 16 2 C 0.13 3.04 6.39 86.38 0.55 3.59 16 3 N -0.73 -20.79 5.52 -478.54 -2.64 -23.43 16 4 C 0.70 29.32 8.49 179.05 1.52 30.84 16 5 O -0.65 -33.78 16.67 -4.00 -0.07 -33.84 16 6 N -0.64 -26.66 3.33 -829.74 -2.76 -29.42 16 7 C 0.10 3.14 6.57 86.85 0.57 3.71 16 8 C -0.12 -4.16 6.50 31.99 0.21 -3.95 16 9 C 0.04 1.77 2.77 -10.35 -0.03 1.74 16 10 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 11 C -0.53 -28.64 8.38 25.60 0.21 -28.42 16 12 H 0.07 3.45 7.76 -2.91 -0.02 3.43 16 13 C 0.01 0.53 5.36 84.65 0.45 0.99 16 14 N -0.92 -55.21 12.77 21.45 0.27 -54.94 16 15 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 16 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 18 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 19 C 0.16 8.43 5.78 86.73 0.50 8.93 16 20 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 21 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 23 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.05 1.32 8.14 -2.39 -0.02 1.31 16 25 H 0.41 8.62 6.95 -92.71 -0.64 7.98 16 26 H 0.10 2.19 7.30 -2.39 -0.02 2.17 16 27 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.06 2.36 8.03 -2.39 -0.02 2.34 16 29 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 30 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 31 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.02 1.09 7.82 -2.38 -0.02 1.07 16 Total: -1.00 -73.05 268.85 2.00 -71.05 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 0.45 Total: 8.50 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 4.71 Total: 16.16 kcal Atomic # 7 Polarization: -102.66 SS G_CDS: -5.12 Total: -107.78 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -0.07 Total: -33.84 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -73.05 2.00 -71.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306800852.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.078 kcal (2) G-P(sol) polarization free energy of solvation -73.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds