Wall clock time and date at job start Mon Mar 30 2020 03:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47083 * 2 1 4 4 C 1.53002 * 109.46707 * 240.00097 * 2 1 3 5 5 C 1.52998 * 109.47275 * 120.00227 * 2 1 3 6 6 C 1.53000 * 109.46908 * 65.60809 * 5 2 1 7 7 H 1.08993 * 109.90242 * 54.67131 * 6 5 2 8 8 C 1.54387 * 109.82926 * 175.60687 * 6 5 2 9 9 C 1.55415 * 102.31088 * 140.79556 * 8 6 5 10 10 C 1.54944 * 100.89225 * 325.98968 * 9 8 6 11 11 H 1.08995 * 110.31008 * 277.35996 * 10 9 8 12 12 C 1.50701 * 110.30965 * 155.28574 * 10 9 8 13 13 H 1.08002 * 119.99795 * 1.39399 * 12 10 9 14 14 C 1.37881 * 120.00146 * 181.38751 * 12 10 9 15 15 N 1.31512 * 119.99701 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 120.00036 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47332 * 180.02562 * 16 14 12 18 18 H 1.48512 * 109.46838 * 299.99976 * 16 14 12 19 19 H 1.48497 * 109.47302 * 59.99589 * 16 14 12 20 20 O 1.43240 * 109.82826 * 293.73399 * 6 5 2 21 21 H 1.09000 * 109.46856 * 291.71065 * 1 2 3 22 22 H 1.09000 * 109.47658 * 51.71087 * 1 2 3 23 23 H 1.09002 * 109.47345 * 171.71542 * 1 2 3 24 24 H 1.09000 * 109.46842 * 180.02562 * 3 2 1 25 25 H 1.09001 * 109.47313 * 299.99887 * 3 2 1 26 26 H 1.08998 * 109.46766 * 60.00733 * 3 2 1 27 27 H 1.09003 * 109.47426 * 299.99792 * 4 2 1 28 28 H 1.09006 * 109.46953 * 60.00283 * 4 2 1 29 29 H 1.09008 * 109.46817 * 179.97438 * 4 2 1 30 30 H 1.08994 * 109.46988 * 305.60525 * 5 2 1 31 31 H 1.09007 * 109.46908 * 185.60053 * 5 2 1 32 32 H 1.09002 * 110.84403 * 259.05464 * 8 6 5 33 33 H 1.09001 * 110.85017 * 22.47096 * 8 6 5 34 34 H 1.08994 * 111.20957 * 208.05599 * 9 8 6 35 35 H 1.09004 * 111.08485 * 83.86569 * 9 8 6 36 36 H 0.96998 * 120.00408 * 0.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.6484 -2.1987 1.1806 7 1 2.0081 -2.6351 0.2489 8 6 2.2529 -2.9571 2.3818 9 6 1.1073 -3.9339 2.7675 10 6 -0.1367 -3.0726 2.4338 11 1 -0.3597 -2.3949 3.2578 12 6 -1.3236 -3.9564 2.1486 13 1 -1.2266 -5.0298 2.2177 14 6 -2.5334 -3.3946 1.7996 15 7 -2.6515 -2.0875 1.7151 16 14 -4.0048 -4.4900 1.4467 17 1 -5.1764 -3.6476 1.0961 18 1 -3.6881 -5.3938 0.3117 19 1 -4.3193 -5.2996 2.6512 20 8 0.2240 -2.3280 1.2596 21 1 -0.3633 0.3802 0.9548 22 1 -0.3634 0.6367 -0.8066 23 1 -0.3634 -1.0169 -0.1481 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9562 0.8901 27 1 1.6766 -1.7490 -1.2493 28 1 1.6765 -0.2073 -2.1393 29 1 3.1300 -0.7209 -1.2496 30 1 1.5971 -0.2687 2.1363 31 1 3.1255 -0.6352 1.3007 32 1 3.1470 -3.5050 2.0845 33 1 2.4737 -2.2730 3.2012 34 1 1.1406 -4.1815 3.8284 35 1 1.1372 -4.8349 2.1547 36 1 -1.8873 -1.5186 1.8980 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307004710.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:38 Heat of formation + Delta-G solvation = -79.717297 kcal Electronic energy + Delta-G solvation = -15315.498672 eV Core-core repulsion = 12991.436194 eV Total energy + Delta-G solvation = -2324.062478 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.88088 -36.38864 -32.72354 -31.05689 -29.42063 -26.96421 -26.52069 -25.88890 -23.23081 -20.60299 -20.28271 -18.11666 -17.03254 -15.62153 -14.90611 -14.26402 -13.85639 -13.67134 -13.33654 -13.12711 -12.62380 -12.44646 -11.93902 -11.69414 -11.36590 -11.27289 -10.97422 -10.84660 -10.71513 -10.61581 -10.41965 -10.11239 -10.06168 -9.99265 -9.72703 -9.57953 -8.73493 -8.39916 -7.86086 -6.28718 -4.06255 3.46927 3.49439 3.67778 4.57731 4.92389 5.14915 5.28416 5.35123 5.48153 5.58648 5.65054 5.81961 5.87702 5.91422 6.04752 6.10541 6.16539 6.19778 6.27330 6.33793 6.43048 6.50517 6.53964 6.58253 6.67350 6.74233 6.81440 6.86185 7.00029 7.37513 7.51151 8.18471 8.39667 8.68234 8.96376 9.75917 11.13203 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.033510 B = 0.010430 C = 0.008703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.364682 B = 2683.896415 C = 3216.634062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.064 4.064 3 C -0.139 4.139 4 C -0.141 4.141 5 C -0.115 4.115 6 C 0.074 3.926 7 H 0.063 0.937 8 C -0.154 4.154 9 C -0.139 4.139 10 C 0.190 3.810 11 H 0.016 0.984 12 C -0.609 4.609 13 H 0.052 0.948 14 C 0.033 3.967 15 N -0.891 5.891 16 Si 1.066 2.934 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.289 1.289 20 O -0.363 6.363 21 H 0.048 0.952 22 H 0.032 0.968 23 H 0.090 0.910 24 H 0.046 0.954 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.127 2.767 -2.037 9.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.064 4.064 3 C -0.196 4.196 4 C -0.198 4.198 5 C -0.152 4.152 6 C 0.015 3.985 7 H 0.081 0.919 8 C -0.192 4.192 9 C -0.177 4.177 10 C 0.136 3.864 11 H 0.034 0.966 12 C -0.647 4.647 13 H 0.070 0.930 14 C -0.176 4.176 15 N -0.526 5.526 16 Si 0.895 3.105 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.215 1.215 20 O -0.283 6.283 21 H 0.067 0.933 22 H 0.051 0.949 23 H 0.108 0.892 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.391 2.894 -2.604 8.353 hybrid contribution 1.953 -0.106 0.644 2.059 sum 9.344 2.788 -1.960 9.946 Atomic orbital electron populations 1.21899 0.92796 1.04059 1.00194 1.20461 0.97175 0.93964 0.94825 1.21888 0.99934 0.96540 1.01245 1.21932 0.99640 1.01223 0.97028 1.22027 0.98993 0.96446 0.97763 1.22591 0.85835 0.93265 0.96765 0.91931 1.23169 0.98658 0.98756 0.98633 1.23196 0.95509 0.98748 1.00210 1.20659 0.92056 0.88811 0.84913 0.96631 1.21976 0.95051 0.93474 1.54179 0.92954 1.25780 1.00583 0.98041 0.93170 1.70660 1.35594 1.03759 1.42605 0.83603 0.75703 0.74799 0.76420 1.20774 1.21483 1.21538 1.88787 1.16570 1.75745 1.47196 0.93251 0.94887 0.89184 0.93519 0.93164 0.93049 0.91782 0.93372 0.93681 0.92088 0.92669 0.92043 0.91913 0.92250 0.91653 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 7.57 37.16 0.28 -2.33 16 2 C -0.06 -1.06 0.80 -154.51 -0.12 -1.18 16 3 C -0.14 -1.94 8.47 37.16 0.31 -1.62 16 4 C -0.14 -2.16 7.97 37.16 0.30 -1.86 16 5 C -0.11 -1.96 3.97 -26.73 -0.11 -2.06 16 6 C 0.07 1.45 3.14 -26.00 -0.08 1.37 16 7 H 0.06 1.20 6.06 -51.93 -0.31 0.88 16 8 C -0.15 -2.79 6.55 -24.72 -0.16 -2.95 16 9 C -0.14 -2.95 6.54 -24.42 -0.16 -3.11 16 10 C 0.19 4.92 2.80 -26.86 -0.08 4.84 16 11 H 0.02 0.44 8.00 -51.93 -0.42 0.03 16 12 C -0.61 -17.48 8.80 -34.44 -0.30 -17.78 16 13 H 0.05 1.48 7.76 -52.49 -0.41 1.08 16 14 C 0.03 0.95 5.42 -17.82 -0.10 0.85 16 15 N -0.89 -27.09 13.57 55.43 0.75 -26.34 16 16 Si 1.07 25.45 29.90 -169.99 -5.08 20.37 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 20 O -0.36 -8.92 6.47 -35.23 -0.23 -9.15 16 21 H 0.05 1.03 8.11 -51.93 -0.42 0.61 16 22 H 0.03 0.59 8.13 -51.93 -0.42 0.17 16 23 H 0.09 2.10 5.89 -51.93 -0.31 1.80 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 1.08 6.22 -51.93 -0.32 0.76 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 30 H 0.06 1.11 8.12 -51.93 -0.42 0.69 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 1.06 7.85 -51.93 -0.41 0.66 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.40 8.04 -51.93 -0.42 0.99 16 36 H 0.28 8.56 6.61 -40.82 -0.27 8.29 16 LS Contribution 279.23 15.07 4.21 4.21 Total: -1.00 -29.86 279.23 -6.87 -36.73 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -6.30 Total: 0.01 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: -0.22 Total: -25.84 kcal Atomic # 7 Polarization: -27.09 SS G_CDS: 0.75 Total: -26.34 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.23 Total: -9.15 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -5.08 Total: 20.37 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.86 -6.87 -36.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307004710.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.987 kcal (2) G-P(sol) polarization free energy of solvation -29.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds