Wall clock time and date at job start Mon Mar 30 2020 03:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47083 * 2 1 4 4 C 1.53002 * 109.46707 * 240.00097 * 2 1 3 5 5 C 1.52998 * 109.47275 * 120.00227 * 2 1 3 6 6 C 1.53000 * 109.46908 * 65.60809 * 5 2 1 7 7 H 1.08993 * 109.90242 * 54.67131 * 6 5 2 8 8 C 1.54387 * 109.82926 * 175.60687 * 6 5 2 9 9 C 1.55415 * 102.31088 * 140.79556 * 8 6 5 10 10 C 1.54944 * 100.89225 * 325.98968 * 9 8 6 11 11 H 1.08995 * 110.31008 * 277.35996 * 10 9 8 12 12 C 1.50701 * 110.30965 * 155.28574 * 10 9 8 13 13 H 1.08002 * 119.99795 * 1.39399 * 12 10 9 14 14 C 1.37881 * 120.00146 * 181.38751 * 12 10 9 15 15 N 1.31512 * 119.99701 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 120.00036 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47332 * 180.02562 * 16 14 12 18 18 H 1.48512 * 109.46838 * 299.99976 * 16 14 12 19 19 H 1.48497 * 109.47302 * 59.99589 * 16 14 12 20 20 O 1.43240 * 109.82826 * 293.73399 * 6 5 2 21 21 H 1.09000 * 109.46856 * 291.71065 * 1 2 3 22 22 H 1.09000 * 109.47658 * 51.71087 * 1 2 3 23 23 H 1.09002 * 109.47345 * 171.71542 * 1 2 3 24 24 H 1.09000 * 109.46842 * 180.02562 * 3 2 1 25 25 H 1.09001 * 109.47313 * 299.99887 * 3 2 1 26 26 H 1.08998 * 109.46766 * 60.00733 * 3 2 1 27 27 H 1.09003 * 109.47426 * 299.99792 * 4 2 1 28 28 H 1.09006 * 109.46953 * 60.00283 * 4 2 1 29 29 H 1.09008 * 109.46817 * 179.97438 * 4 2 1 30 30 H 1.08994 * 109.46988 * 305.60525 * 5 2 1 31 31 H 1.09007 * 109.46908 * 185.60053 * 5 2 1 32 32 H 1.09002 * 110.84403 * 259.05464 * 8 6 5 33 33 H 1.09001 * 110.85017 * 22.47096 * 8 6 5 34 34 H 1.08994 * 111.20957 * 208.05599 * 9 8 6 35 35 H 1.09004 * 111.08485 * 83.86569 * 9 8 6 36 36 H 0.96998 * 120.00408 * 0.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.6484 -2.1987 1.1806 7 1 2.0081 -2.6351 0.2489 8 6 2.2529 -2.9571 2.3818 9 6 1.1073 -3.9339 2.7675 10 6 -0.1367 -3.0726 2.4338 11 1 -0.3597 -2.3949 3.2578 12 6 -1.3236 -3.9564 2.1486 13 1 -1.2266 -5.0298 2.2177 14 6 -2.5334 -3.3946 1.7996 15 7 -2.6515 -2.0875 1.7151 16 14 -4.0048 -4.4900 1.4467 17 1 -5.1764 -3.6476 1.0961 18 1 -3.6881 -5.3938 0.3117 19 1 -4.3193 -5.2996 2.6512 20 8 0.2240 -2.3280 1.2596 21 1 -0.3633 0.3802 0.9548 22 1 -0.3634 0.6367 -0.8066 23 1 -0.3634 -1.0169 -0.1481 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9562 0.8901 27 1 1.6766 -1.7490 -1.2493 28 1 1.6765 -0.2073 -2.1393 29 1 3.1300 -0.7209 -1.2496 30 1 1.5971 -0.2687 2.1363 31 1 3.1255 -0.6352 1.3007 32 1 3.1470 -3.5050 2.0845 33 1 2.4737 -2.2730 3.2012 34 1 1.1406 -4.1815 3.8284 35 1 1.1372 -4.8349 2.1547 36 1 -1.8873 -1.5186 1.8980 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307004710.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:38 Heat of formation + Delta-G solvation = -96.656130 kcal Electronic energy + Delta-G solvation = -15316.233195 eV Core-core repulsion = 12991.436194 eV Total energy + Delta-G solvation = -2324.797001 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.52016 -37.88742 -34.83315 -32.78037 -31.10938 -28.15634 -28.01843 -27.67137 -25.12128 -22.43773 -21.86373 -19.48683 -19.10986 -17.33959 -16.59322 -15.64857 -15.62443 -15.30958 -15.17852 -14.66312 -14.14103 -14.01350 -13.48583 -13.13774 -13.01766 -12.68775 -12.61657 -12.40502 -12.37898 -12.27459 -12.00980 -11.92580 -11.56120 -11.46340 -11.37237 -11.06623 -10.68113 -10.55363 -9.77829 -8.58271 -6.36590 1.52251 1.60958 1.79990 2.58588 3.10203 3.53152 3.79073 3.85572 4.01884 4.05090 4.20334 4.30281 4.50130 4.53393 4.66410 4.76767 4.80398 4.85411 4.89934 4.90285 4.97287 4.99297 5.07095 5.12016 5.18174 5.31173 5.33143 5.44008 5.50585 5.61756 5.79579 6.04867 6.16064 6.62839 6.85324 7.55936 8.83165 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.033510 B = 0.010430 C = 0.008703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.364682 B = 2683.896415 C = 3216.634062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.065 4.065 3 C -0.133 4.133 4 C -0.136 4.136 5 C -0.108 4.108 6 C 0.060 3.940 7 H 0.070 0.930 8 C -0.141 4.141 9 C -0.134 4.134 10 C 0.182 3.818 11 H -0.018 1.018 12 C -0.630 4.630 13 H 0.050 0.950 14 C -0.019 4.019 15 N -0.917 5.917 16 Si 1.114 2.886 17 H -0.284 1.284 18 H -0.274 1.274 19 H -0.268 1.268 20 O -0.385 6.385 21 H 0.023 0.977 22 H 0.043 0.957 23 H 0.049 0.951 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.046 0.954 27 H 0.041 0.959 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.042 0.958 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.055 2.592 -2.598 11.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.065 4.065 3 C -0.190 4.190 4 C -0.193 4.193 5 C -0.146 4.146 6 C 0.002 3.998 7 H 0.088 0.912 8 C -0.179 4.179 9 C -0.172 4.172 10 C 0.127 3.873 11 H 0.000 1.000 12 C -0.667 4.667 13 H 0.068 0.932 14 C -0.221 4.221 15 N -0.553 5.553 16 Si 0.936 3.064 17 H -0.209 1.209 18 H -0.200 1.200 19 H -0.193 1.193 20 O -0.306 6.306 21 H 0.042 0.958 22 H 0.062 0.938 23 H 0.067 0.933 24 H 0.090 0.910 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.348 2.716 -3.158 10.234 hybrid contribution 1.397 -0.035 0.813 1.616 sum 10.744 2.681 -2.346 11.319 Atomic orbital electron populations 1.21772 0.95881 1.01340 0.99060 1.20483 0.94460 0.96170 0.95373 1.21820 1.01423 0.94218 1.01534 1.21874 1.01279 0.99653 0.96526 1.21982 1.00912 0.94405 0.97284 1.22938 0.83423 0.95487 0.97936 0.91206 1.23144 0.98451 0.98076 0.98186 1.23093 0.94701 0.98507 1.00919 1.20513 0.93594 0.88712 0.84502 1.00006 1.22395 0.96687 0.93850 1.53763 0.93184 1.27264 1.03864 0.98513 0.92484 1.70772 1.35074 1.04621 1.44805 0.82998 0.72418 0.73540 0.77488 1.20938 1.19972 1.19321 1.88744 1.19991 1.75645 1.46200 0.95789 0.93833 0.93256 0.91023 0.92285 0.93497 0.94027 0.92529 0.90923 0.93887 0.89116 0.88580 0.90643 0.91056 0.92048 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.99 7.57 71.98 0.55 -4.44 16 2 C -0.06 -2.04 0.80 -52.18 -0.04 -2.08 16 3 C -0.13 -3.33 8.47 71.98 0.61 -2.72 16 4 C -0.14 -3.85 7.97 71.98 0.57 -3.27 16 5 C -0.11 -3.51 3.97 30.59 0.12 -3.39 16 6 C 0.06 2.29 3.14 31.07 0.10 2.38 16 7 H 0.07 2.56 6.06 -2.39 -0.01 2.55 16 8 C -0.14 -4.76 6.55 31.90 0.21 -4.55 16 9 C -0.13 -5.62 6.54 32.09 0.21 -5.41 16 10 C 0.18 9.69 2.80 30.51 0.09 9.78 16 11 H -0.02 -1.02 8.00 -2.39 -0.02 -1.04 16 12 C -0.63 -37.06 8.80 25.60 0.23 -36.83 16 13 H 0.05 2.88 7.76 -2.91 -0.02 2.85 16 14 C -0.02 -1.14 5.42 84.66 0.46 -0.68 16 15 N -0.92 -57.97 13.57 21.45 0.29 -57.68 16 16 Si 1.11 51.80 29.90 68.60 2.05 53.86 16 17 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 20 O -0.39 -19.51 6.47 -148.98 -0.96 -20.47 16 21 H 0.02 1.03 8.11 -2.39 -0.02 1.01 16 22 H 0.04 1.59 8.13 -2.39 -0.02 1.57 16 23 H 0.05 2.40 5.89 -2.39 -0.01 2.39 16 24 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.04 1.35 6.22 -2.39 -0.01 1.34 16 28 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.04 1.54 8.12 -2.39 -0.02 1.52 16 31 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 32 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.07 2.36 7.85 -2.39 -0.02 2.34 16 34 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.06 2.59 8.04 -2.38 -0.02 2.57 16 36 H 0.27 17.27 6.61 -92.71 -0.61 16.66 16 Total: -1.00 -67.23 279.23 5.64 -61.58 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 1.17 Total: 13.93 kcal Atomic # 6 Polarization: -54.31 SS G_CDS: 3.09 Total: -51.22 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: 0.29 Total: -57.68 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.96 Total: -20.47 kcal Atomic # 14 Polarization: 51.80 SS G_CDS: 2.05 Total: 53.86 kcal Total: -67.23 5.64 -61.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307004710.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.074 kcal (2) G-P(sol) polarization free energy of solvation -67.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds