Wall clock time and date at job start Mon Mar 30 2020 03:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47317 * 2 1 4 4 C 1.52997 * 109.47269 * 239.99656 * 2 1 3 5 5 C 1.53006 * 109.46623 * 119.99820 * 2 1 3 6 6 C 1.52997 * 109.47127 * 60.00064 * 5 2 1 7 7 H 1.09002 * 110.27574 * 307.09062 * 6 5 2 8 8 C 1.54948 * 110.31116 * 184.99837 * 6 5 2 9 9 C 1.55304 * 100.94261 * 204.63814 * 8 6 5 10 10 C 1.54381 * 102.25245 * 34.13548 * 9 8 6 11 11 H 1.08999 * 109.83787 * 98.15277 * 10 9 8 12 12 C 1.50706 * 109.82962 * 219.13018 * 10 9 8 13 13 H 1.07997 * 119.99796 * 359.97438 * 12 10 9 14 14 C 1.37880 * 120.00188 * 179.97438 * 12 10 9 15 15 N 1.31510 * 120.00054 * 179.97438 * 14 12 10 16 16 Si 1.86802 * 119.99702 * 359.97438 * 14 12 10 17 17 H 1.48495 * 109.47168 * 90.00316 * 16 14 12 18 18 H 1.48501 * 109.46859 * 209.99748 * 16 14 12 19 19 H 1.48501 * 109.47243 * 330.00064 * 16 14 12 20 20 O 1.43239 * 107.58934 * 338.64109 * 10 9 8 21 21 H 1.09001 * 109.47362 * 300.00732 * 1 2 3 22 22 H 1.09002 * 109.46716 * 60.00091 * 1 2 3 23 23 H 1.09000 * 109.47486 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47153 * 299.99641 * 3 2 1 26 26 H 1.08996 * 109.46952 * 59.99813 * 3 2 1 27 27 H 1.09000 * 109.47140 * 300.00547 * 4 2 1 28 28 H 1.09001 * 109.47230 * 59.99691 * 4 2 1 29 29 H 1.09001 * 109.47375 * 180.02562 * 4 2 1 30 30 H 1.09001 * 109.47002 * 179.97438 * 5 2 1 31 31 H 1.08993 * 109.46955 * 300.00075 * 5 2 1 32 32 H 1.09003 * 111.12227 * 322.55477 * 8 6 5 33 33 H 1.08996 * 111.12166 * 86.67630 * 8 6 5 34 34 H 1.08997 * 110.84561 * 152.31937 * 9 8 6 35 35 H 1.08993 * 110.84703 * 275.74067 * 9 8 6 36 36 H 0.96993 * 120.00398 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2494 6 6 1.5298 -2.1637 1.2494 7 1 0.4473 -2.1816 1.1231 8 6 1.9295 -2.8755 2.5664 9 6 1.9237 -4.3607 2.1123 10 6 2.4102 -4.2583 0.6508 11 1 3.4767 -4.4775 0.5997 12 6 1.6453 -5.2288 -0.2119 13 1 0.8869 -5.8600 0.2274 14 6 1.9135 -5.3110 -1.5618 15 7 1.2464 -6.1583 -2.3145 16 14 3.2247 -4.2188 -2.3216 17 1 4.5368 -4.9124 -2.2715 18 1 2.8709 -3.9306 -3.7348 19 1 3.3088 -2.9451 -1.5627 20 8 2.1679 -2.9182 0.2067 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 3.1300 1.4424 0.0005 25 1 1.6768 1.9563 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.6766 -1.7489 -1.2492 28 1 1.6767 -0.2076 -2.1392 29 1 3.1300 -0.7217 -1.2489 30 1 3.1299 -0.7217 1.2492 31 1 1.6765 -0.2074 2.1392 32 1 2.9230 -2.5684 2.8930 33 1 1.1900 -2.7000 3.3477 34 1 2.6163 -4.9520 2.7111 35 1 0.9177 -4.7773 2.1613 36 1 1.4353 -6.2164 -3.2640 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307004712.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:42 Heat of formation + Delta-G solvation = -66.780235 kcal Electronic energy + Delta-G solvation = -15380.864892 eV Core-core repulsion = 13057.363407 eV Total energy + Delta-G solvation = -2323.501485 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.93972 -36.53441 -32.48527 -31.19369 -29.92041 -27.03281 -26.69424 -26.48020 -23.28801 -20.62038 -20.02936 -18.30146 -16.68739 -15.93199 -15.25605 -14.35508 -14.10504 -13.93956 -13.20779 -12.75095 -12.56404 -12.44854 -12.10097 -11.92478 -11.84143 -11.49947 -11.14028 -11.10754 -10.73596 -10.61297 -10.39141 -10.13533 -9.97721 -9.77609 -9.59852 -9.54023 -9.21204 -8.46982 -8.01952 -6.02513 -4.10000 3.44161 3.50691 3.75881 4.61099 4.80885 5.04597 5.19965 5.28061 5.43332 5.48804 5.63476 5.76987 5.81464 5.84543 5.96712 6.06020 6.10524 6.14656 6.22341 6.24571 6.36636 6.44887 6.45330 6.48620 6.58833 6.66946 6.71209 6.80578 6.90761 7.23890 7.42311 7.74093 8.37830 8.55140 8.99049 9.63120 11.08337 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.029019 B = 0.012971 C = 0.010371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.667659 B = 2158.179897 C = 2699.162769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.066 4.066 3 C -0.139 4.139 4 C -0.149 4.149 5 C -0.104 4.104 6 C 0.076 3.924 7 H 0.061 0.939 8 C -0.154 4.154 9 C -0.134 4.134 10 C 0.166 3.834 11 H 0.034 0.966 12 C -0.532 4.532 13 H 0.072 0.928 14 C 0.083 3.917 15 N -0.898 5.898 16 Si 0.858 3.142 17 H -0.289 1.289 18 H -0.294 1.294 19 H -0.206 1.206 20 O -0.367 6.367 21 H 0.046 0.954 22 H 0.048 0.952 23 H 0.065 0.935 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.098 0.902 28 H 0.035 0.965 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.388 12.306 6.644 14.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.066 4.066 3 C -0.196 4.196 4 C -0.205 4.205 5 C -0.142 4.142 6 C 0.018 3.982 7 H 0.079 0.921 8 C -0.192 4.192 9 C -0.171 4.171 10 C 0.111 3.889 11 H 0.051 0.949 12 C -0.569 4.569 13 H 0.090 0.910 14 C -0.120 4.120 15 N -0.536 5.536 16 Si 0.685 3.315 17 H -0.216 1.216 18 H -0.220 1.220 19 H -0.129 1.129 20 O -0.288 6.288 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.084 0.916 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.117 0.883 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.417 12.326 6.280 13.906 hybrid contribution 0.542 0.255 -0.353 0.695 sum 1.959 12.581 5.928 14.045 Atomic orbital electron populations 1.21933 0.95141 1.02353 1.00579 1.20474 0.95308 0.94356 0.96427 1.21880 1.00656 0.96208 1.00863 1.22225 1.00586 1.03035 0.94684 1.21799 1.00798 0.94962 0.96650 1.22794 0.96996 0.90875 0.87540 0.92120 1.23265 1.00884 0.97111 0.97948 1.22991 1.01806 0.94589 0.97746 1.20686 0.95734 0.81610 0.90907 0.94866 1.21320 1.22435 1.19731 0.93399 0.90997 1.25017 0.95774 0.94119 0.97121 1.69941 1.41274 1.36209 1.06156 0.87219 0.81038 0.84692 0.78578 1.21643 1.22042 1.12904 1.88822 1.79479 1.24019 1.36510 0.93460 0.93288 0.91642 0.93083 0.93154 0.93349 0.88335 0.94614 0.93416 0.91909 0.92140 0.91739 0.91799 0.92260 0.91211 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.14 37.16 0.30 -1.75 16 2 C -0.07 -1.00 0.80 -154.51 -0.12 -1.12 16 3 C -0.14 -1.76 8.47 37.16 0.31 -1.45 16 4 C -0.15 -2.66 6.89 37.16 0.26 -2.40 16 5 C -0.10 -1.61 4.12 -26.73 -0.11 -1.72 16 6 C 0.08 1.39 3.05 -25.70 -0.08 1.31 16 7 H 0.06 1.15 6.14 -51.93 -0.32 0.83 16 8 C -0.15 -2.57 6.57 -24.48 -0.16 -2.73 16 9 C -0.13 -2.64 6.52 -24.79 -0.16 -2.80 16 10 C 0.17 3.95 2.82 -27.16 -0.08 3.87 16 11 H 0.03 0.81 7.54 -51.93 -0.39 0.42 16 12 C -0.53 -15.16 9.33 -34.44 -0.32 -15.48 16 13 H 0.07 2.21 7.77 -52.49 -0.41 1.80 16 14 C 0.08 2.45 5.47 -17.82 -0.10 2.35 16 15 N -0.90 -28.00 13.96 55.43 0.77 -27.22 16 16 Si 0.86 21.75 26.56 -169.99 -4.51 17.23 16 17 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 18 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 19 H -0.21 -4.88 3.75 56.52 0.21 -4.67 16 20 O -0.37 -8.22 4.75 -35.23 -0.17 -8.38 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 1.05 6.29 -51.93 -0.33 0.73 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.10 2.10 4.43 -51.93 -0.23 1.87 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.86 7.89 -51.93 -0.41 0.45 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 1.00 8.06 -51.93 -0.42 0.58 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 1.43 7.66 -51.93 -0.40 1.03 16 36 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 270.90 15.07 4.08 4.08 Total: -1.00 -30.19 270.90 -6.53 -36.72 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -6.45 Total: -0.49 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -0.26 Total: -21.93 kcal Atomic # 7 Polarization: -28.00 SS G_CDS: 0.77 Total: -27.22 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: -0.17 Total: -8.38 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.51 Total: 17.23 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.19 -6.53 -36.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307004712.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.060 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds