Wall clock time and date at job start Mon Mar 30 2020 03:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47317 * 2 1 4 4 C 1.52997 * 109.47269 * 239.99656 * 2 1 3 5 5 C 1.53006 * 109.46623 * 119.99820 * 2 1 3 6 6 C 1.52997 * 109.47127 * 60.00064 * 5 2 1 7 7 H 1.09002 * 110.27574 * 307.09062 * 6 5 2 8 8 C 1.54948 * 110.31116 * 184.99837 * 6 5 2 9 9 C 1.55304 * 100.94261 * 204.63814 * 8 6 5 10 10 C 1.54381 * 102.25245 * 34.13548 * 9 8 6 11 11 H 1.08999 * 109.83787 * 98.15277 * 10 9 8 12 12 C 1.50706 * 109.82962 * 219.13018 * 10 9 8 13 13 H 1.07997 * 119.99796 * 359.97438 * 12 10 9 14 14 C 1.37880 * 120.00188 * 179.97438 * 12 10 9 15 15 N 1.31510 * 120.00054 * 179.97438 * 14 12 10 16 16 Si 1.86802 * 119.99702 * 359.97438 * 14 12 10 17 17 H 1.48495 * 109.47168 * 90.00316 * 16 14 12 18 18 H 1.48501 * 109.46859 * 209.99748 * 16 14 12 19 19 H 1.48501 * 109.47243 * 330.00064 * 16 14 12 20 20 O 1.43239 * 107.58934 * 338.64109 * 10 9 8 21 21 H 1.09001 * 109.47362 * 300.00732 * 1 2 3 22 22 H 1.09002 * 109.46716 * 60.00091 * 1 2 3 23 23 H 1.09000 * 109.47486 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47153 * 299.99641 * 3 2 1 26 26 H 1.08996 * 109.46952 * 59.99813 * 3 2 1 27 27 H 1.09000 * 109.47140 * 300.00547 * 4 2 1 28 28 H 1.09001 * 109.47230 * 59.99691 * 4 2 1 29 29 H 1.09001 * 109.47375 * 180.02562 * 4 2 1 30 30 H 1.09001 * 109.47002 * 179.97438 * 5 2 1 31 31 H 1.08993 * 109.46955 * 300.00075 * 5 2 1 32 32 H 1.09003 * 111.12227 * 322.55477 * 8 6 5 33 33 H 1.08996 * 111.12166 * 86.67630 * 8 6 5 34 34 H 1.08997 * 110.84561 * 152.31937 * 9 8 6 35 35 H 1.08993 * 110.84703 * 275.74067 * 9 8 6 36 36 H 0.96993 * 120.00398 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2494 6 6 1.5298 -2.1637 1.2494 7 1 0.4473 -2.1816 1.1231 8 6 1.9295 -2.8755 2.5664 9 6 1.9237 -4.3607 2.1123 10 6 2.4102 -4.2583 0.6508 11 1 3.4767 -4.4775 0.5997 12 6 1.6453 -5.2288 -0.2119 13 1 0.8869 -5.8600 0.2274 14 6 1.9135 -5.3110 -1.5618 15 7 1.2464 -6.1583 -2.3145 16 14 3.2247 -4.2188 -2.3216 17 1 4.5368 -4.9124 -2.2715 18 1 2.8709 -3.9306 -3.7348 19 1 3.3088 -2.9451 -1.5627 20 8 2.1679 -2.9182 0.2067 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 3.1300 1.4424 0.0005 25 1 1.6768 1.9563 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.6766 -1.7489 -1.2492 28 1 1.6767 -0.2076 -2.1392 29 1 3.1300 -0.7217 -1.2489 30 1 3.1299 -0.7217 1.2492 31 1 1.6765 -0.2074 2.1392 32 1 2.9230 -2.5684 2.8930 33 1 1.1900 -2.7000 3.3477 34 1 2.6163 -4.9520 2.7111 35 1 0.9177 -4.7773 2.1613 36 1 1.4353 -6.2164 -3.2640 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307004712.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:41 Heat of formation + Delta-G solvation = -84.829211 kcal Electronic energy + Delta-G solvation = -15381.647555 eV Core-core repulsion = 13057.363407 eV Total energy + Delta-G solvation = -2324.284147 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.45067 -37.87982 -34.66755 -32.76417 -31.57491 -28.25136 -28.05538 -27.98041 -24.98496 -22.08450 -21.80417 -19.53347 -18.83512 -17.49592 -16.92517 -16.04802 -15.56173 -15.15096 -14.72432 -14.54982 -14.32266 -13.95370 -13.56715 -13.35997 -13.03725 -12.82794 -12.65481 -12.43479 -12.35611 -12.12290 -12.01592 -11.57918 -11.50686 -11.43313 -11.17294 -11.11550 -10.88550 -10.63587 -9.82228 -8.30984 -6.42202 1.38747 1.41684 1.73383 2.46712 2.99623 3.48646 3.83918 3.95329 4.08997 4.12883 4.30606 4.37300 4.58521 4.61432 4.73634 4.83489 4.87180 4.96107 4.99832 5.02092 5.03256 5.05163 5.17344 5.18379 5.24285 5.36614 5.43425 5.50962 5.57530 5.61473 5.66806 5.88554 6.20768 6.59817 6.83635 7.35710 8.83390 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.029019 B = 0.012971 C = 0.010371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.667659 B = 2158.179897 C = 2699.162769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.068 4.068 3 C -0.132 4.132 4 C -0.149 4.149 5 C -0.097 4.097 6 C 0.064 3.936 7 H 0.049 0.951 8 C -0.138 4.138 9 C -0.134 4.134 10 C 0.164 3.836 11 H 0.033 0.967 12 C -0.537 4.537 13 H 0.031 0.969 14 C 0.025 3.975 15 N -0.948 5.948 16 Si 0.921 3.079 17 H -0.287 1.287 18 H -0.300 1.300 19 H -0.181 1.181 20 O -0.380 6.380 21 H 0.070 0.930 22 H 0.053 0.947 23 H 0.038 0.962 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.042 0.958 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.052 0.948 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.495 15.296 8.307 17.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.068 4.068 3 C -0.190 4.190 4 C -0.206 4.206 5 C -0.134 4.134 6 C 0.006 3.994 7 H 0.067 0.933 8 C -0.176 4.176 9 C -0.172 4.172 10 C 0.108 3.892 11 H 0.051 0.949 12 C -0.574 4.574 13 H 0.049 0.951 14 C -0.173 4.173 15 N -0.588 5.588 16 Si 0.746 3.254 17 H -0.213 1.213 18 H -0.227 1.227 19 H -0.103 1.103 20 O -0.301 6.301 21 H 0.089 0.911 22 H 0.072 0.928 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.521 15.329 7.970 17.460 hybrid contribution 0.097 -0.716 -0.832 1.102 sum 2.618 14.613 7.138 16.472 Atomic orbital electron populations 1.21904 0.94790 1.01071 1.02014 1.20510 0.95622 0.95756 0.94891 1.21805 1.00809 0.94202 1.02147 1.22178 1.00236 1.01328 0.96846 1.21774 1.00791 0.92817 0.98056 1.23084 0.96411 0.92516 0.87366 0.93274 1.23233 1.02959 0.93736 0.97652 1.22929 1.01080 0.97576 0.95612 1.20525 0.94809 0.81505 0.92336 0.94940 1.21692 1.21466 1.20211 0.94074 0.95060 1.25915 0.98094 0.95528 0.97812 1.70085 1.43643 1.38588 1.06513 0.86266 0.77968 0.83865 0.77345 1.21344 1.22685 1.10286 1.88755 1.79802 1.23055 1.38489 0.91148 0.92795 0.94246 0.92819 0.92679 0.91341 0.91968 0.93926 0.93829 0.91826 0.89015 0.89638 0.88982 0.90417 0.92942 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 8.14 71.98 0.59 -3.11 16 2 C -0.07 -1.84 0.80 -52.18 -0.04 -1.88 16 3 C -0.13 -2.80 8.47 71.98 0.61 -2.19 16 4 C -0.15 -5.07 6.89 71.98 0.50 -4.57 16 5 C -0.10 -2.61 4.12 30.60 0.13 -2.49 16 6 C 0.06 2.17 3.05 31.26 0.10 2.27 16 7 H 0.05 1.80 6.14 -2.39 -0.01 1.79 16 8 C -0.14 -4.12 6.57 32.05 0.21 -3.91 16 9 C -0.13 -5.13 6.52 31.85 0.21 -4.92 16 10 C 0.16 7.76 2.82 30.32 0.09 7.85 16 11 H 0.03 1.55 7.54 -2.39 -0.02 1.53 16 12 C -0.54 -31.69 9.33 25.60 0.24 -31.45 16 13 H 0.03 2.03 7.77 -2.91 -0.02 2.01 16 14 C 0.02 1.50 5.47 84.66 0.46 1.96 16 15 N -0.95 -61.61 13.96 21.45 0.30 -61.31 16 16 Si 0.92 46.01 26.56 68.60 1.82 47.84 16 17 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 18 H -0.30 -15.13 7.11 99.48 0.71 -14.43 16 19 H -0.18 -8.25 3.75 99.48 0.37 -7.88 16 20 O -0.38 -16.59 4.75 -148.98 -0.71 -17.30 16 21 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 22 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.04 1.23 6.29 -2.39 -0.02 1.21 16 24 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 26 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.06 2.60 4.43 -2.39 -0.01 2.59 16 28 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.04 1.47 7.89 -2.39 -0.02 1.45 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.72 16 31 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.09 2.24 8.06 -2.39 -0.02 2.22 16 33 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.05 2.15 7.66 -2.39 -0.02 2.14 16 36 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 Total: -1.00 -67.77 270.90 5.18 -62.59 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.68 Total: 10.61 kcal Atomic # 6 Polarization: -45.51 SS G_CDS: 3.08 Total: -42.44 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: 0.30 Total: -61.31 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.71 Total: -17.30 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.82 Total: 47.84 kcal Total: -67.77 5.18 -62.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307004712.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.239 kcal (2) G-P(sol) polarization free energy of solvation -67.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds