Wall clock time and date at job start Mon Mar 30 2020 02:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.46857 * 2 1 4 4 C 1.48720 * 111.01831 * 54.49058 * 3 2 1 5 5 C 1.54381 * 104.51692 * 158.96284 * 4 3 2 6 6 C 1.54257 * 105.14978 * 336.27274 * 5 4 3 7 7 H 1.08995 * 110.32942 * 118.94877 * 6 5 4 8 8 N 1.46505 * 110.32259 * 241.05014 * 6 5 4 9 9 C 1.34778 * 120.00199 * 273.54945 * 8 6 5 10 10 O 1.21683 * 119.99698 * 359.97438 * 9 8 6 11 11 C 1.46372 * 119.99889 * 179.97438 * 9 8 6 12 12 H 1.07996 * 120.00384 * 359.97438 * 11 9 8 13 13 C 1.40055 * 119.99670 * 179.97438 * 11 9 8 14 14 N 1.30664 * 119.99935 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 119.99772 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47061 * 89.99946 * 15 13 11 17 17 H 1.48504 * 109.46961 * 209.99795 * 15 13 11 18 18 H 1.48497 * 109.47293 * 329.99618 * 15 13 11 19 19 C 1.48567 * 110.99718 * 170.00040 * 3 2 1 20 20 H 1.09000 * 109.46892 * 60.00179 * 1 2 3 21 21 H 1.09000 * 109.47207 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47184 * 300.00087 * 1 2 3 23 23 H 1.09003 * 109.47184 * 239.99913 * 2 1 3 24 24 H 1.09000 * 109.46892 * 119.99821 * 2 1 3 25 25 H 1.09004 * 110.38960 * 40.24251 * 4 3 2 26 26 H 1.08996 * 110.50963 * 277.74694 * 4 3 2 27 27 H 1.09002 * 110.32526 * 217.32092 * 5 4 3 28 28 H 1.08998 * 110.32190 * 95.21733 * 5 4 3 29 29 H 0.97004 * 120.00318 * 93.54221 * 8 6 5 30 30 H 0.97002 * 120.00167 * 180.02562 * 14 13 11 31 31 H 1.08999 * 110.41133 * 82.17552 * 19 3 2 32 32 H 1.09001 * 110.41003 * 319.73948 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4371 2.1567 1.1301 5 6 2.4053 3.3427 1.3285 6 6 3.7509 2.8669 0.7433 7 1 4.0525 3.5095 -0.0838 8 7 4.7834 2.8589 1.7827 9 6 5.4844 3.9798 2.0450 10 8 5.2600 4.9983 1.4181 11 6 6.5155 3.9718 3.0839 12 1 6.7143 3.0680 3.6405 13 6 7.2442 5.1364 3.3560 14 7 7.0040 6.2299 2.6822 15 14 8.5606 5.1261 4.6813 16 1 9.8649 4.7479 4.0805 17 1 8.6670 6.4793 5.2839 18 1 8.1965 4.1432 5.7331 19 6 3.4849 1.4317 0.2408 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.3992 1.5424 2.0297 26 1 0.4414 2.5177 0.8729 27 1 2.5129 3.5703 2.3890 28 1 2.0463 4.2188 0.7885 29 1 4.9624 2.0469 2.2823 30 1 7.5090 7.0364 2.8704 31 1 4.0285 1.2463 -0.6855 32 1 3.7685 0.7039 1.0012 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307141814.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:21 Heat of formation + Delta-G solvation = -65.225701 kcal Electronic energy + Delta-G solvation = -14193.753721 eV Core-core repulsion = 11766.779302 eV Total energy + Delta-G solvation = -2426.974419 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.48720 -38.77654 -35.41801 -34.50106 -32.73213 -30.23902 -29.21764 -27.52147 -24.11952 -22.59994 -21.84275 -20.71712 -19.21802 -17.55627 -17.08949 -17.04357 -15.93432 -15.71695 -15.10829 -14.84447 -14.49727 -14.26804 -13.84311 -13.31638 -13.17158 -12.88167 -12.65745 -12.54083 -12.45794 -12.29115 -12.26507 -12.00321 -11.78921 -11.64490 -10.93295 -9.87341 -9.49213 -9.45696 -8.28918 -6.86125 1.40245 1.41904 1.57119 2.24347 2.47316 2.81002 3.35952 3.55213 3.64343 3.88518 4.09813 4.27468 4.28987 4.38123 4.46946 4.60647 4.67431 4.83196 4.94388 4.99020 5.07546 5.16229 5.20998 5.31559 5.33512 5.75225 5.87988 6.08585 6.23609 6.31550 6.86679 7.54844 8.50052 8.67882 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.074598 B = 0.006231 C = 0.006051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.257396 B = 4492.229308 C = 4626.236813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.037 3.963 3 N -0.520 5.520 4 C 0.048 3.952 5 C -0.133 4.133 6 C 0.147 3.853 7 H 0.047 0.953 8 N -0.747 5.747 9 C 0.539 3.461 10 O -0.630 6.630 11 C -0.575 4.575 12 H 0.087 0.913 13 C 0.029 3.971 14 N -0.822 5.822 15 Si 0.999 3.001 16 H -0.261 1.261 17 H -0.273 1.273 18 H -0.249 1.249 19 C 0.043 3.957 20 H 0.059 0.941 21 H 0.077 0.923 22 H 0.054 0.946 23 H 0.083 0.917 24 H 0.040 0.960 25 H 0.053 0.947 26 H 0.093 0.907 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.393 0.607 30 H 0.274 0.726 31 H 0.088 0.912 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.453 -12.868 -0.557 15.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.091 4.091 3 N -0.246 5.246 4 C -0.079 4.079 5 C -0.173 4.173 6 C 0.040 3.960 7 H 0.065 0.935 8 N -0.402 5.402 9 C 0.343 3.657 10 O -0.517 6.517 11 C -0.611 4.611 12 H 0.105 0.895 13 C -0.186 4.186 14 N -0.452 5.452 15 Si 0.818 3.182 16 H -0.186 1.186 17 H -0.198 1.198 18 H -0.172 1.172 19 C -0.086 4.086 20 H 0.078 0.922 21 H 0.095 0.905 22 H 0.073 0.927 23 H 0.102 0.898 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.112 0.888 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.227 0.773 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.758 -11.759 -1.592 14.749 hybrid contribution 0.887 -0.192 1.296 1.582 sum -7.871 -11.952 -0.296 14.314 Atomic orbital electron populations 1.21810 0.93592 1.02779 1.02312 1.22367 0.97107 0.88096 1.01515 1.65471 1.03732 1.13655 1.41708 1.23049 0.98436 0.93781 0.92669 1.22692 0.95652 0.98604 1.00328 1.21266 0.87813 0.96470 0.90417 0.93494 1.45912 1.40023 1.13754 1.40480 1.18603 0.81661 0.81708 0.83724 1.90554 1.71633 1.34304 1.55245 1.21444 1.20142 0.98984 1.20570 0.89451 1.26980 0.99349 0.93865 0.98441 1.70191 1.36344 1.01758 1.36904 0.85007 0.77143 0.78640 0.77407 1.18597 1.19833 1.17210 1.23205 0.90020 0.94417 1.00915 0.92229 0.90458 0.92660 0.89841 0.94223 0.92888 0.88835 0.92735 0.92581 0.77283 0.91584 0.89381 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.63 71.98 0.69 -1.73 16 2 C 0.04 0.74 5.78 86.30 0.50 1.24 16 3 N -0.52 -13.93 5.49 -881.03 -4.83 -18.76 16 4 C 0.05 1.32 5.12 86.42 0.44 1.76 16 5 C -0.13 -4.91 6.77 31.49 0.21 -4.70 16 6 C 0.15 5.92 3.36 45.88 0.15 6.08 16 7 H 0.05 2.24 7.64 -2.39 -0.02 2.22 16 8 N -0.75 -34.07 5.04 -442.58 -2.23 -36.30 16 9 C 0.54 31.71 7.74 86.36 0.67 32.38 16 10 O -0.63 -43.00 14.72 -4.30 -0.06 -43.07 16 11 C -0.57 -32.85 9.54 24.83 0.24 -32.62 16 12 H 0.09 4.45 7.85 -2.91 -0.02 4.43 16 13 C 0.03 1.61 5.50 85.31 0.47 2.08 16 14 N -0.82 -50.99 11.83 21.84 0.26 -50.73 16 15 Si 1.00 41.12 29.56 68.60 2.03 43.15 16 16 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 17 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 18 H -0.25 -9.48 7.11 99.48 0.71 -8.78 16 19 C 0.04 1.28 6.20 86.45 0.54 1.82 16 20 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 21 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.05 0.92 6.84 -2.39 -0.02 0.90 16 23 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.04 0.76 7.88 -2.39 -0.02 0.74 16 25 H 0.05 1.32 8.00 -2.38 -0.02 1.31 16 26 H 0.09 2.26 7.68 -2.39 -0.02 2.24 16 27 H 0.05 2.19 7.95 -2.39 -0.02 2.17 16 28 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.39 15.37 8.32 -92.71 -0.77 14.60 16 30 H 0.27 15.38 8.29 -92.71 -0.77 14.61 16 31 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.06 1.65 7.41 -2.39 -0.02 1.63 16 Total: -1.00 -74.30 266.16 -0.59 -74.89 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.33 Total: 24.52 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 3.91 Total: 6.30 kcal Atomic # 7 Polarization: -98.99 SS G_CDS: -6.80 Total: -105.80 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -0.06 Total: -43.07 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -74.30 -0.59 -74.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307141814.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.669 kcal (2) G-P(sol) polarization free energy of solvation -74.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds