Wall clock time and date at job start Mon Mar 30 2020 03:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47247 * 2 1 4 4 C 1.53003 * 109.46958 * 240.00505 * 2 1 3 5 5 C 1.53004 * 109.47578 * 120.00200 * 2 1 3 6 6 H 1.08998 * 109.48003 * 180.02562 * 5 2 1 7 7 C 1.53093 * 109.47932 * 300.05991 * 5 2 1 8 8 C 1.53176 * 109.16220 * 177.58957 * 7 5 2 9 9 C 1.53203 * 109.03962 * 303.01680 * 8 7 5 10 10 C 1.53094 * 109.15501 * 56.97528 * 9 8 7 11 11 H 1.08995 * 109.48311 * 182.40383 * 10 9 8 12 12 C 1.50706 * 109.47669 * 62.37883 * 10 9 8 13 13 H 1.07999 * 120.00193 * 0.03384 * 12 10 9 14 14 C 1.37879 * 119.99398 * 180.02562 * 12 10 9 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46845 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47399 * 299.99813 * 16 14 12 19 19 H 1.48498 * 109.47295 * 60.00420 * 16 14 12 20 20 O 1.42904 * 109.47554 * 59.99581 * 5 2 1 21 21 H 1.09007 * 109.46871 * 299.99906 * 1 2 3 22 22 H 1.09003 * 109.47246 * 59.99624 * 1 2 3 23 23 H 1.08999 * 109.47477 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47536 * 179.97438 * 3 2 1 25 25 H 1.09003 * 109.47305 * 300.00340 * 3 2 1 26 26 H 1.09007 * 109.46642 * 60.00495 * 3 2 1 27 27 H 1.08996 * 109.46813 * 299.99533 * 4 2 1 28 28 H 1.08995 * 109.47423 * 59.99573 * 4 2 1 29 29 H 1.09007 * 109.47257 * 180.02562 * 4 2 1 30 30 H 1.08999 * 109.51815 * 297.49640 * 7 5 2 31 31 H 1.09002 * 109.52264 * 57.68052 * 7 5 2 32 32 H 1.09000 * 109.54734 * 62.87986 * 8 7 5 33 33 H 1.08996 * 109.54400 * 183.06540 * 8 7 5 34 34 H 1.09005 * 109.52173 * 297.07841 * 9 8 7 35 35 H 1.09001 * 109.53738 * 176.88044 * 9 8 7 36 36 H 0.97000 * 119.99706 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 3.1300 -0.7209 1.2495 7 6 1.5287 -0.0007 2.4994 8 6 1.9931 -0.7627 3.7443 9 6 1.4927 -2.2084 3.6610 10 6 2.0054 -2.8435 2.3658 11 1 1.6174 -3.8585 2.2803 12 6 3.5119 -2.8815 2.3868 13 1 4.0501 -2.4923 3.2384 14 6 4.2029 -3.4132 1.3187 15 7 3.5475 -3.8868 0.2816 16 14 6.0701 -3.4609 1.3450 17 1 6.5673 -4.0758 0.0880 18 1 6.5990 -2.0782 1.4619 19 1 6.5285 -4.2660 2.5055 20 8 1.5637 -2.0686 1.2493 21 1 -0.3633 0.5139 0.8901 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 3.1299 1.4425 0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9563 0.8901 27 1 1.6766 -1.7488 -1.2493 28 1 1.6765 -0.2074 -2.1393 29 1 3.1300 -0.7216 -1.2492 30 1 1.9268 1.0137 2.5235 31 1 0.4394 0.0350 2.4793 32 1 3.0821 -0.7561 3.7909 33 1 1.5870 -0.2859 4.6363 34 1 0.4027 -2.2173 3.6644 35 1 1.8653 -2.7729 4.5158 36 1 2.5779 -3.8624 0.2681 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307186052.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:36 Heat of formation + Delta-G solvation = -81.526125 kcal Electronic energy + Delta-G solvation = -15764.937339 eV Core-core repulsion = 13440.796425 eV Total energy + Delta-G solvation = -2324.140915 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.91468 -35.70718 -32.65807 -32.11949 -29.12593 -26.83314 -26.61095 -25.04121 -23.16332 -22.12985 -19.33577 -18.12085 -16.55398 -15.23501 -14.62613 -14.10467 -13.82826 -13.66026 -13.26013 -13.23856 -12.83315 -12.19718 -11.76444 -11.62005 -11.40089 -11.23089 -11.12568 -10.80749 -10.76587 -10.42113 -10.23740 -10.18876 -10.05178 -9.94026 -9.58077 -9.21994 -8.55571 -8.33412 -7.69748 -6.25551 -4.05833 3.44637 3.45096 3.64203 4.55890 4.97903 5.34679 5.45089 5.50313 5.66322 5.81759 5.84226 5.90074 6.03370 6.10850 6.21406 6.24270 6.33882 6.36536 6.40680 6.48481 6.58774 6.59589 6.65957 6.80253 6.87507 6.96014 7.00312 7.04742 7.16924 7.26907 7.56747 8.12564 8.44009 8.88446 8.99316 9.75338 11.13364 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.027982 B = 0.013966 C = 0.011544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.402192 B = 2004.329293 C = 2425.015173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.063 4.063 3 C -0.139 4.139 4 C -0.127 4.127 5 C 0.122 3.878 6 H 0.063 0.937 7 C -0.145 4.145 8 C -0.108 4.108 9 C -0.133 4.133 10 C 0.195 3.805 11 H 0.049 0.951 12 C -0.632 4.632 13 H 0.047 0.953 14 C 0.036 3.964 15 N -0.891 5.891 16 Si 1.058 2.942 17 H -0.283 1.283 18 H -0.289 1.289 19 H -0.289 1.289 20 O -0.386 6.386 21 H 0.048 0.952 22 H 0.040 0.960 23 H 0.061 0.939 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.036 0.964 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.053 0.947 36 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.421 7.970 0.917 8.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.063 4.063 3 C -0.197 4.197 4 C -0.185 4.185 5 C 0.063 3.937 6 H 0.080 0.920 7 C -0.183 4.183 8 C -0.146 4.146 9 C -0.171 4.171 10 C 0.140 3.860 11 H 0.067 0.933 12 C -0.670 4.670 13 H 0.066 0.934 14 C -0.173 4.173 15 N -0.526 5.526 16 Si 0.887 3.113 17 H -0.208 1.208 18 H -0.216 1.216 19 H -0.216 1.216 20 O -0.305 6.305 21 H 0.067 0.933 22 H 0.060 0.940 23 H 0.080 0.920 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.233 7.426 -0.109 7.755 hybrid contribution -1.096 0.579 1.297 1.794 sum -3.329 8.005 1.188 8.750 Atomic orbital electron populations 1.21809 0.95226 1.02051 0.99945 1.20539 0.95445 0.94228 0.96062 1.21891 1.01013 0.95823 1.00938 1.21676 1.00892 1.01021 0.94868 1.21478 0.98194 0.83379 0.90626 0.91960 1.22249 1.00371 0.98566 0.97073 1.21438 1.01472 0.95742 0.95925 1.22032 0.98105 0.96261 1.00724 1.19818 0.94402 0.89958 0.81843 0.93287 1.22286 0.91579 1.46398 1.06724 0.93442 1.25630 1.06221 0.92849 0.92608 1.70633 1.11619 1.40770 1.29537 0.83722 0.75257 0.76367 0.75973 1.20814 1.21587 1.21587 1.87791 1.73578 1.21029 1.48136 0.93293 0.94046 0.91951 0.92793 0.93126 0.92822 0.91392 0.94465 0.93001 0.92701 0.92535 0.91416 0.94334 0.94336 0.92801 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 7.98 37.15 0.30 -1.93 16 2 C -0.06 -1.15 0.63 -154.51 -0.10 -1.24 16 3 C -0.14 -2.15 8.12 37.16 0.30 -1.85 16 4 C -0.13 -2.47 8.33 37.16 0.31 -2.16 16 5 C 0.12 2.61 1.63 -26.68 -0.04 2.57 16 6 H 0.06 1.55 7.09 -51.93 -0.37 1.18 16 7 C -0.14 -2.74 4.70 -26.59 -0.12 -2.87 16 8 C -0.11 -2.14 5.78 -26.54 -0.15 -2.30 16 9 C -0.13 -2.88 5.60 -26.58 -0.15 -3.02 16 10 C 0.20 4.94 2.76 -27.83 -0.08 4.87 16 11 H 0.05 1.33 8.01 -51.93 -0.42 0.92 16 12 C -0.63 -17.26 6.59 -34.44 -0.23 -17.48 16 13 H 0.05 1.30 6.87 -52.49 -0.36 0.94 16 14 C 0.04 1.00 5.40 -17.82 -0.10 0.90 16 15 N -0.89 -26.31 13.53 55.43 0.75 -25.56 16 16 Si 1.06 25.00 29.90 -169.99 -5.08 19.92 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 20 O -0.39 -9.45 7.57 -35.23 -0.27 -9.71 16 21 H 0.05 0.77 6.38 -51.92 -0.33 0.44 16 22 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 1.14 7.68 -51.93 -0.40 0.74 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.77 6.49 -51.93 -0.34 0.43 16 27 H 0.07 1.49 7.68 -51.93 -0.40 1.09 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 1.07 8.14 -51.92 -0.42 0.64 16 30 H 0.05 0.93 6.57 -51.93 -0.34 0.59 16 31 H 0.06 1.03 6.31 -51.93 -0.33 0.70 16 32 H 0.07 1.44 6.85 -51.93 -0.36 1.09 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.28 8.49 6.47 -40.82 -0.26 8.22 16 LS Contribution 271.38 15.07 4.09 4.09 Total: -1.00 -28.48 271.38 -6.65 -35.13 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -6.08 Total: 0.65 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: -0.06 Total: -24.51 kcal Atomic # 7 Polarization: -26.31 SS G_CDS: 0.75 Total: -25.56 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -0.27 Total: -9.71 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.08 Total: 19.92 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.48 -6.65 -35.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307186052.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.398 kcal (2) G-P(sol) polarization free energy of solvation -28.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds