Wall clock time and date at job start Mon Mar 30 2020 03:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46461 * 2 1 4 4 C 1.52997 * 109.47409 * 239.99866 * 2 1 3 5 5 C 1.53000 * 109.46904 * 119.99290 * 2 1 3 6 6 H 1.09003 * 109.48421 * 180.02562 * 5 2 1 7 7 C 1.53090 * 109.47837 * 60.00841 * 5 2 1 8 8 C 1.53177 * 109.15976 * 182.40483 * 7 5 2 9 9 C 1.53178 * 109.03987 * 56.97934 * 8 7 5 10 10 C 1.53093 * 109.15847 * 303.01631 * 9 8 7 11 11 H 1.08995 * 109.48473 * 297.61069 * 10 9 8 12 12 C 1.50703 * 109.47847 * 177.59111 * 10 9 8 13 13 H 1.08006 * 120.00159 * 0.02562 * 12 10 9 14 14 C 1.37877 * 120.00120 * 180.02562 * 12 10 9 15 15 N 1.31514 * 120.00089 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99938 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 269.99556 * 16 14 12 18 18 H 1.48503 * 109.47261 * 149.99737 * 16 14 12 19 19 H 1.48500 * 109.47454 * 29.99730 * 16 14 12 20 20 O 1.42899 * 109.42455 * 57.60663 * 10 9 8 21 21 H 1.09003 * 109.47484 * 299.99984 * 1 2 3 22 22 H 1.08995 * 109.47581 * 60.00488 * 1 2 3 23 23 H 1.09004 * 109.47031 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46792 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.46767 * 299.99577 * 3 2 1 26 26 H 1.08994 * 109.47491 * 59.99745 * 3 2 1 27 27 H 1.09004 * 109.46881 * 299.99917 * 4 2 1 28 28 H 1.08995 * 109.47038 * 59.99313 * 4 2 1 29 29 H 1.08995 * 109.46837 * 179.97438 * 4 2 1 30 30 H 1.09000 * 109.52491 * 62.50011 * 7 5 2 31 31 H 1.08998 * 109.57464 * 302.33844 * 7 5 2 32 32 H 1.09004 * 109.54618 * 297.10566 * 8 7 5 33 33 H 1.09009 * 109.54511 * 176.84458 * 8 7 5 34 34 H 1.09002 * 109.52306 * 183.11502 * 9 8 7 35 35 H 1.09000 * 109.57275 * 62.95558 * 9 8 7 36 36 H 0.96998 * 119.99255 * 0.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7211 1.2493 6 1 3.1300 -0.7208 1.2498 7 6 1.5299 -2.1645 1.2496 8 6 1.9943 -2.8616 2.5320 9 6 1.4926 -2.0676 3.7421 10 6 2.0043 -0.6279 3.6455 11 1 3.0937 -0.6263 3.6777 12 6 1.4662 0.1752 4.8016 13 1 0.8241 -0.2937 5.5326 14 6 1.7937 1.5087 4.9263 15 7 2.5760 2.0797 4.0366 16 14 1.1274 2.5040 6.3598 17 1 -0.1711 3.1147 5.9773 18 1 2.0941 3.5754 6.7103 19 1 0.9294 1.6133 7.5314 20 8 1.5629 -0.0482 2.4162 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1299 1.4427 -0.0005 25 1 1.6765 1.9563 -0.8901 26 1 1.6765 1.9564 0.8899 27 1 1.6768 -1.7490 -1.2491 28 1 1.6767 -0.2075 -2.1391 29 1 3.1300 -0.7208 -1.2493 30 1 1.9290 -2.6921 0.3833 31 1 0.4407 -2.1670 1.2076 32 1 3.0833 -2.9045 2.5500 33 1 1.5877 -3.8725 2.5653 34 1 1.8651 -2.5258 4.6583 35 1 0.4027 -2.0670 3.7521 36 1 2.9223 1.5627 3.2925 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307186055.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:46 Heat of formation + Delta-G solvation = -83.320994 kcal Electronic energy + Delta-G solvation = -15483.900818 eV Core-core repulsion = 13159.682072 eV Total energy + Delta-G solvation = -2324.218746 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.98802 -35.76475 -32.90481 -32.27791 -29.26073 -26.92935 -26.76152 -25.09847 -23.35150 -21.85208 -19.54270 -18.22124 -16.99664 -15.15306 -14.82161 -14.08042 -14.02634 -13.73422 -13.64205 -13.20863 -12.94724 -12.37971 -11.88695 -11.71870 -11.41765 -11.29979 -11.07286 -10.80884 -10.74552 -10.65835 -10.34911 -10.13970 -10.13654 -9.99432 -9.90069 -9.32327 -8.55281 -8.29104 -8.02218 -6.29995 -4.08147 3.46817 3.49767 3.65245 4.55348 4.83193 5.17576 5.30464 5.46146 5.51190 5.62667 5.66263 5.79842 5.92135 5.95079 6.04954 6.15826 6.18328 6.21206 6.25897 6.28902 6.46093 6.49924 6.54379 6.62775 6.73777 6.76686 6.82149 6.83796 6.98242 7.08847 7.36364 8.17270 8.44171 8.84858 8.97009 9.74323 11.10628 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.033085 B = 0.011289 C = 0.009287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.104496 B = 2479.594551 C = 3014.224129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.059 4.059 3 C -0.134 4.134 4 C -0.140 4.140 5 C 0.095 3.905 6 H 0.036 0.964 7 C -0.147 4.147 8 C -0.122 4.122 9 C -0.135 4.135 10 C 0.203 3.797 11 H 0.002 0.998 12 C -0.600 4.600 13 H 0.055 0.945 14 C 0.033 3.967 15 N -0.890 5.890 16 Si 1.070 2.930 17 H -0.287 1.287 18 H -0.284 1.284 19 H -0.289 1.289 20 O -0.363 6.363 21 H 0.068 0.932 22 H 0.042 0.958 23 H 0.049 0.951 24 H 0.046 0.954 25 H 0.042 0.958 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.422 -5.632 -7.484 9.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.059 4.059 3 C -0.192 4.192 4 C -0.197 4.197 5 C 0.036 3.964 6 H 0.054 0.946 7 C -0.184 4.184 8 C -0.160 4.160 9 C -0.173 4.173 10 C 0.148 3.852 11 H 0.019 0.981 12 C -0.638 4.638 13 H 0.073 0.927 14 C -0.176 4.176 15 N -0.525 5.525 16 Si 0.898 3.102 17 H -0.214 1.214 18 H -0.210 1.210 19 H -0.215 1.215 20 O -0.283 6.283 21 H 0.087 0.913 22 H 0.061 0.939 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.525 -3.974 -6.812 8.032 hybrid contribution 0.155 -1.929 -0.733 2.070 sum -1.370 -5.903 -7.545 9.677 Atomic orbital electron populations 1.21803 0.94609 1.01108 1.01614 1.20474 0.96100 0.95914 0.93379 1.21760 1.00260 0.95239 1.01908 1.21908 1.00687 1.00089 0.97039 1.21799 0.96011 0.90419 0.88189 0.94618 1.22273 1.01575 0.97471 0.97131 1.21642 1.00042 0.98225 0.96066 1.22109 1.00761 0.98456 0.95987 1.19854 0.93421 0.89001 0.82920 0.98056 1.21896 1.36038 0.98174 1.07647 0.92689 1.25810 0.94678 0.95701 1.01393 1.70618 1.28845 1.40013 1.12985 0.83555 0.76236 0.75601 0.74805 1.21395 1.21003 1.21522 1.88333 1.73520 1.53907 1.12511 0.91329 0.93886 0.93240 0.93478 0.93934 0.90699 0.92725 0.92888 0.93030 0.92494 0.91468 0.92949 0.93189 0.92658 0.92480 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 7.98 37.16 0.30 -1.97 16 2 C -0.06 -1.02 0.63 -154.51 -0.10 -1.11 16 3 C -0.13 -2.46 8.33 37.16 0.31 -2.15 16 4 C -0.14 -1.96 8.12 37.16 0.30 -1.66 16 5 C 0.09 1.91 1.90 -26.68 -0.05 1.86 16 6 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 7 C -0.15 -2.59 4.70 -26.59 -0.12 -2.72 16 8 C -0.12 -2.23 6.03 -26.55 -0.16 -2.39 16 9 C -0.14 -2.96 5.36 -26.59 -0.14 -3.10 16 10 C 0.20 5.30 2.10 -27.83 -0.06 5.24 16 11 H 0.00 0.05 8.01 -51.93 -0.42 -0.36 16 12 C -0.60 -17.29 8.79 -34.44 -0.30 -17.60 16 13 H 0.05 1.57 7.74 -52.48 -0.41 1.16 16 14 C 0.03 0.95 5.40 -17.82 -0.10 0.85 16 15 N -0.89 -27.09 13.53 55.43 0.75 -26.34 16 16 Si 1.07 25.48 29.90 -169.99 -5.08 20.40 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 20 O -0.36 -9.09 7.38 -35.23 -0.26 -9.35 16 21 H 0.07 1.35 7.68 -51.93 -0.40 0.95 16 22 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.78 6.38 -51.93 -0.33 0.45 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.07 1.64 7.68 -51.93 -0.40 1.24 16 27 H 0.05 0.71 6.49 -51.93 -0.34 0.38 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.87 6.57 -51.93 -0.34 0.53 16 31 H 0.07 1.20 6.32 -51.93 -0.33 0.87 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.80 8.14 -51.92 -0.42 0.37 16 34 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.28 8.59 6.47 -40.82 -0.26 8.32 16 LS Contribution 276.23 15.07 4.16 4.16 Total: -1.00 -30.04 276.23 -6.80 -36.85 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -6.24 Total: -0.97 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: -0.13 Total: -24.75 kcal Atomic # 7 Polarization: -27.09 SS G_CDS: 0.75 Total: -26.34 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -0.26 Total: -9.35 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.08 Total: 20.40 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.04 -6.80 -36.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307186055.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.476 kcal (2) G-P(sol) polarization free energy of solvation -30.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds