Wall clock time and date at job start Mon Mar 30 2020 03:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46461 * 2 1 4 4 C 1.52997 * 109.47409 * 239.99866 * 2 1 3 5 5 C 1.53000 * 109.46904 * 119.99290 * 2 1 3 6 6 H 1.09003 * 109.48421 * 180.02562 * 5 2 1 7 7 C 1.53090 * 109.47837 * 60.00841 * 5 2 1 8 8 C 1.53177 * 109.15976 * 182.40483 * 7 5 2 9 9 C 1.53178 * 109.03987 * 56.97934 * 8 7 5 10 10 C 1.53093 * 109.15847 * 303.01631 * 9 8 7 11 11 H 1.08995 * 109.48473 * 297.61069 * 10 9 8 12 12 C 1.50703 * 109.47847 * 177.59111 * 10 9 8 13 13 H 1.08006 * 120.00159 * 0.02562 * 12 10 9 14 14 C 1.37877 * 120.00120 * 180.02562 * 12 10 9 15 15 N 1.31514 * 120.00089 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99938 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 269.99556 * 16 14 12 18 18 H 1.48503 * 109.47261 * 149.99737 * 16 14 12 19 19 H 1.48500 * 109.47454 * 29.99730 * 16 14 12 20 20 O 1.42899 * 109.42455 * 57.60663 * 10 9 8 21 21 H 1.09003 * 109.47484 * 299.99984 * 1 2 3 22 22 H 1.08995 * 109.47581 * 60.00488 * 1 2 3 23 23 H 1.09004 * 109.47031 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46792 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.46767 * 299.99577 * 3 2 1 26 26 H 1.08994 * 109.47491 * 59.99745 * 3 2 1 27 27 H 1.09004 * 109.46881 * 299.99917 * 4 2 1 28 28 H 1.08995 * 109.47038 * 59.99313 * 4 2 1 29 29 H 1.08995 * 109.46837 * 179.97438 * 4 2 1 30 30 H 1.09000 * 109.52491 * 62.50011 * 7 5 2 31 31 H 1.08998 * 109.57464 * 302.33844 * 7 5 2 32 32 H 1.09004 * 109.54618 * 297.10566 * 8 7 5 33 33 H 1.09009 * 109.54511 * 176.84458 * 8 7 5 34 34 H 1.09002 * 109.52306 * 183.11502 * 9 8 7 35 35 H 1.09000 * 109.57275 * 62.95558 * 9 8 7 36 36 H 0.96998 * 119.99255 * 0.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7211 1.2493 6 1 3.1300 -0.7208 1.2498 7 6 1.5299 -2.1645 1.2496 8 6 1.9943 -2.8616 2.5320 9 6 1.4926 -2.0676 3.7421 10 6 2.0043 -0.6279 3.6455 11 1 3.0937 -0.6263 3.6777 12 6 1.4662 0.1752 4.8016 13 1 0.8241 -0.2937 5.5326 14 6 1.7937 1.5087 4.9263 15 7 2.5760 2.0797 4.0366 16 14 1.1274 2.5040 6.3598 17 1 -0.1711 3.1147 5.9773 18 1 2.0941 3.5754 6.7103 19 1 0.9294 1.6133 7.5314 20 8 1.5629 -0.0482 2.4162 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1299 1.4427 -0.0005 25 1 1.6765 1.9563 -0.8901 26 1 1.6765 1.9564 0.8899 27 1 1.6768 -1.7490 -1.2491 28 1 1.6767 -0.2075 -2.1391 29 1 3.1300 -0.7208 -1.2493 30 1 1.9290 -2.6921 0.3833 31 1 0.4407 -2.1670 1.2076 32 1 3.0833 -2.9045 2.5500 33 1 1.5877 -3.8725 2.5653 34 1 1.8651 -2.5258 4.6583 35 1 0.4027 -2.0670 3.7521 36 1 2.9223 1.5627 3.2925 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307186055.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:45 Heat of formation + Delta-G solvation = -100.813082 kcal Electronic energy + Delta-G solvation = -15484.659332 eV Core-core repulsion = 13159.682072 eV Total energy + Delta-G solvation = -2324.977260 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.63780 -37.37765 -34.80341 -34.17724 -31.04949 -28.27029 -28.15143 -26.97699 -25.06347 -23.74431 -21.20435 -19.75461 -19.06169 -16.86078 -16.51393 -15.73643 -15.68699 -15.48993 -15.37624 -14.70406 -14.51616 -13.98647 -13.46400 -13.12964 -13.02815 -12.81207 -12.68198 -12.54015 -12.43121 -12.31021 -11.93883 -11.85997 -11.69313 -11.60269 -11.43624 -10.95068 -10.66784 -10.39544 -9.87790 -8.60374 -6.40350 1.51590 1.60952 1.78452 2.56252 3.02184 3.49959 3.76550 3.90944 4.03822 4.12498 4.21369 4.24537 4.42105 4.46226 4.62096 4.73563 4.77271 4.81600 4.88133 4.90083 4.98737 5.04057 5.06640 5.10613 5.18095 5.21361 5.23795 5.35130 5.44157 5.56464 5.63163 6.02741 6.15073 6.60083 7.00841 7.52888 8.78687 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.033085 B = 0.011289 C = 0.009287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.104496 B = 2479.594551 C = 3014.224129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.059 4.059 3 C -0.130 4.130 4 C -0.132 4.132 5 C 0.083 3.917 6 H 0.019 0.981 7 C -0.140 4.140 8 C -0.118 4.118 9 C -0.130 4.130 10 C 0.200 3.800 11 H -0.032 1.032 12 C -0.623 4.623 13 H 0.052 0.948 14 C -0.018 4.018 15 N -0.914 5.914 16 Si 1.117 2.883 17 H -0.277 1.277 18 H -0.280 1.280 19 H -0.269 1.269 20 O -0.387 6.387 21 H 0.028 0.972 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.042 0.958 25 H 0.070 0.930 26 H 0.026 0.974 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.248 -6.989 -8.837 11.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.059 4.059 3 C -0.187 4.187 4 C -0.189 4.189 5 C 0.025 3.975 6 H 0.037 0.963 7 C -0.177 4.177 8 C -0.155 4.155 9 C -0.168 4.168 10 C 0.144 3.856 11 H -0.015 1.015 12 C -0.660 4.660 13 H 0.070 0.930 14 C -0.221 4.221 15 N -0.550 5.550 16 Si 0.939 3.061 17 H -0.202 1.202 18 H -0.206 1.206 19 H -0.193 1.193 20 O -0.307 6.307 21 H 0.047 0.953 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.061 0.939 25 H 0.089 0.911 26 H 0.045 0.955 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.351 -5.357 -8.178 10.055 hybrid contribution 0.441 -1.523 -0.357 1.626 sum -1.910 -6.880 -8.535 11.128 Atomic orbital electron populations 1.21748 0.94087 1.01873 1.00871 1.20554 0.96516 0.95136 0.93726 1.21705 0.99933 0.96248 1.00841 1.21848 1.00896 1.00722 0.95448 1.22145 0.95282 0.92550 0.87522 0.96299 1.22232 1.01705 0.95525 0.98239 1.21634 1.00197 0.99306 0.94393 1.21983 1.00197 0.96344 0.98231 1.19685 0.91369 0.91327 0.83188 1.01455 1.22310 1.35770 0.98859 1.09053 0.93007 1.27323 0.94171 0.97353 1.03206 1.70740 1.30695 1.40024 1.13541 0.82955 0.76021 0.74685 0.72450 1.20234 1.20579 1.19343 1.88234 1.73591 1.55368 1.13500 0.95295 0.91361 0.91687 0.93918 0.91114 0.95479 0.91010 0.90721 0.92762 0.88874 0.91239 0.92870 0.89737 0.92548 0.93066 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 7.98 71.98 0.57 -3.56 16 2 C -0.06 -1.98 0.63 -52.18 -0.03 -2.01 16 3 C -0.13 -4.78 8.33 71.98 0.60 -4.18 16 4 C -0.13 -3.21 8.12 71.98 0.58 -2.63 16 5 C 0.08 3.33 1.90 30.62 0.06 3.39 16 6 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 7 C -0.14 -4.57 4.70 30.68 0.14 -4.43 16 8 C -0.12 -4.05 6.03 30.71 0.19 -3.86 16 9 C -0.13 -5.67 5.36 30.69 0.16 -5.50 16 10 C 0.20 10.81 2.10 29.88 0.06 10.87 16 11 H -0.03 -1.89 8.01 -2.39 -0.02 -1.91 16 12 C -0.62 -37.04 8.79 25.60 0.23 -36.81 16 13 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 14 C -0.02 -1.10 5.40 84.65 0.46 -0.64 16 15 N -0.91 -58.01 13.53 21.45 0.29 -57.72 16 16 Si 1.12 51.98 29.90 68.60 2.05 54.03 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 20 O -0.39 -20.07 7.38 -148.98 -1.10 -21.17 16 21 H 0.03 1.13 7.68 -2.39 -0.02 1.11 16 22 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.06 1.86 6.38 -2.39 -0.02 1.85 16 24 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 25 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.03 1.22 7.68 -2.39 -0.02 1.20 16 27 H 0.07 1.52 6.49 -2.39 -0.02 1.50 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.09 2.41 6.57 -2.39 -0.02 2.40 16 31 H 0.07 2.27 6.32 -2.39 -0.02 2.25 16 32 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 34 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.27 17.26 6.47 -92.71 -0.60 16.66 16 Total: -1.00 -68.24 276.23 5.45 -62.78 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 1.19 Total: 11.42 kcal Atomic # 6 Polarization: -52.38 SS G_CDS: 3.02 Total: -49.36 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: 0.29 Total: -57.72 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -1.10 Total: -21.17 kcal Atomic # 14 Polarization: 51.98 SS G_CDS: 2.05 Total: 54.03 kcal Total: -68.24 5.45 -62.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307186055.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.028 kcal (2) G-P(sol) polarization free energy of solvation -68.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds