Wall clock time and date at job start Mon Mar 30 2020 03:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 119.99824 * 2 1 4 4 O 1.21278 * 120.00191 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99991 * 179.97438 * 3 2 1 6 6 H 1.09000 * 110.27190 * 57.90809 * 5 3 2 7 7 C 1.54600 * 110.30823 * 295.71496 * 5 3 2 8 8 C 1.54936 * 102.91980 * 219.12514 * 7 5 3 9 9 N 1.48528 * 103.22894 * 37.41391 * 8 7 5 10 10 C 1.46906 * 111.00222 * 200.27752 * 9 8 7 11 11 C 1.50697 * 109.46781 * 287.39744 * 10 9 8 12 12 H 1.07997 * 120.00244 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99757 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99962 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00163 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46886 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47256 * 120.00076 * 15 13 11 18 18 H 1.48503 * 109.47178 * 240.00306 * 15 13 11 19 19 C 1.47904 * 105.82365 * 320.79281 * 9 8 7 20 20 H 1.09002 * 109.47391 * 300.00144 * 1 2 3 21 21 H 1.09001 * 109.46813 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47041 * 60.00328 * 1 2 3 23 23 H 0.97004 * 120.00104 * 179.97438 * 2 1 3 24 24 H 1.08997 * 110.72165 * 337.48518 * 7 5 3 25 25 H 1.08994 * 110.72049 * 100.76963 * 7 5 3 26 26 H 1.08999 * 110.67031 * 278.97922 * 8 7 5 27 27 H 1.08997 * 110.81008 * 155.91723 * 8 7 5 28 28 H 1.08992 * 109.46740 * 47.39691 * 10 9 8 29 29 H 1.08999 * 109.46841 * 167.39874 * 10 9 8 30 30 H 0.97001 * 119.99934 * 180.02562 * 14 13 11 31 31 H 1.09000 * 109.91480 * 265.98086 * 19 9 8 32 32 H 1.08991 * 110.08393 * 144.77090 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6459 1.1673 0.0006 6 1 4.0239 0.6239 -0.8654 7 6 4.1819 0.5385 1.3072 8 6 5.4007 1.4326 1.6474 9 7 4.9467 2.7906 1.2527 10 6 6.0906 3.6888 1.0459 11 6 6.6987 4.0425 2.3786 12 1 6.2773 3.6407 3.2882 13 6 7.7931 4.8792 2.4367 14 7 8.3059 5.3690 1.3291 15 14 8.5474 5.3172 4.0886 16 1 7.7901 4.6422 5.1730 17 1 9.9631 4.8702 4.1204 18 1 8.4881 6.7879 4.2855 19 6 4.1803 2.6115 0.0004 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8901 23 1 1.9500 -0.8401 0.0004 24 1 3.4323 0.5916 2.0967 25 1 4.4945 -0.4921 1.1393 26 1 6.2718 1.1337 1.0643 27 1 5.6223 1.3959 2.7139 28 1 6.8366 3.1904 0.4270 29 1 5.7534 4.5977 0.5477 30 1 9.0760 5.9573 1.3699 31 1 4.8324 2.7660 -0.8592 32 1 3.3487 3.3152 -0.0333 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307386108.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:14 Heat of formation + Delta-G solvation = -35.870344 kcal Electronic energy + Delta-G solvation = -14158.749503 eV Core-core repulsion = 11733.048028 eV Total energy + Delta-G solvation = -2425.701475 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.92331 -37.44788 -34.56854 -33.11115 -31.18681 -28.57255 -27.28028 -25.91988 -22.58657 -21.71141 -20.22014 -19.62696 -17.35849 -16.35828 -15.86325 -15.38713 -14.79508 -14.48393 -14.09226 -13.52053 -13.15217 -12.75269 -12.47425 -12.33882 -11.82700 -11.50166 -11.32317 -10.97437 -10.93045 -10.57130 -10.40489 -10.37437 -9.80893 -9.58851 -9.14937 -9.12619 -8.39478 -7.26978 -5.98801 -3.99733 2.78537 3.25088 3.33933 3.41146 3.46637 4.46614 4.75961 4.89526 4.96264 5.09793 5.33546 5.39063 5.39985 5.53199 5.68042 5.78388 5.92722 6.02779 6.28725 6.34567 6.52186 6.60458 6.70952 7.22794 7.32804 7.47744 7.84046 8.06922 8.21804 8.32487 8.56407 9.08452 9.64420 11.12419 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.067306 B = 0.006199 C = 0.006078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.910906 B = 4515.552892 C = 4605.586863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.741 5.741 3 C 0.523 3.477 4 O -0.530 6.530 5 C -0.120 4.120 6 H 0.095 0.905 7 C -0.113 4.113 8 C 0.049 3.951 9 N -0.512 5.512 10 C 0.183 3.817 11 C -0.503 4.503 12 H 0.063 0.937 13 C 0.054 3.946 14 N -0.900 5.900 15 Si 0.898 3.102 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.043 3.957 20 H 0.058 0.942 21 H 0.071 0.929 22 H 0.057 0.943 23 H 0.400 0.600 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.039 0.961 27 H 0.081 0.919 28 H -0.006 1.006 29 H 0.031 0.969 30 H 0.260 0.740 31 H 0.039 0.961 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.291 -13.650 -3.034 17.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.394 5.394 3 C 0.310 3.690 4 O -0.405 6.405 5 C -0.142 4.142 6 H 0.113 0.887 7 C -0.152 4.152 8 C -0.080 4.080 9 N -0.237 5.237 10 C 0.058 3.942 11 C -0.542 4.542 12 H 0.081 0.919 13 C -0.147 4.147 14 N -0.540 5.540 15 Si 0.726 3.274 16 H -0.197 1.197 17 H -0.212 1.212 18 H -0.210 1.210 19 C -0.086 4.086 20 H 0.077 0.923 21 H 0.090 0.910 22 H 0.075 0.925 23 H 0.234 0.766 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.057 0.943 27 H 0.099 0.901 28 H 0.012 0.988 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.926 -12.493 -2.696 16.814 hybrid contribution 1.250 -0.476 0.093 1.340 sum -9.676 -12.968 -2.603 16.388 Atomic orbital electron populations 1.21492 0.80094 1.01774 1.02250 1.45821 1.07466 1.08843 1.77222 1.20653 0.90274 0.83278 0.74790 1.90680 1.70158 1.31279 1.48388 1.22199 0.91201 1.00442 1.00407 0.88709 1.22528 0.98975 0.98392 0.95263 1.23051 0.94205 0.89046 1.01664 1.64907 1.24276 1.08243 1.26296 1.19908 0.85757 0.91346 0.97215 1.21181 1.12035 1.28110 0.92882 0.91856 1.25000 0.96966 0.96083 0.96675 1.69973 1.23965 1.33407 1.26656 0.86435 0.78767 0.78198 0.83988 1.19657 1.21155 1.21017 1.22867 0.98862 0.93523 0.93321 0.92340 0.90994 0.92454 0.76635 0.90903 0.91166 0.94259 0.90102 0.98814 0.95122 0.93022 0.94221 0.88903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 10.70 59.85 0.64 1.44 16 2 N -0.74 -7.85 5.69 -67.07 -0.38 -8.23 16 3 C 0.52 7.90 7.01 -10.98 -0.08 7.82 16 4 O -0.53 -10.30 15.24 5.56 0.08 -10.21 16 5 C -0.12 -1.80 3.38 -90.41 -0.31 -2.10 16 6 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 7 C -0.11 -1.61 6.58 -24.87 -0.16 -1.77 16 8 C 0.05 0.93 6.12 -1.90 -0.01 0.91 16 9 N -0.51 -11.71 5.23 -231.90 -1.21 -12.92 16 10 C 0.18 4.96 4.47 -4.97 -0.02 4.94 16 11 C -0.50 -14.58 8.91 -34.44 -0.31 -14.88 16 12 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 13 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 15 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 19 C 0.04 0.85 6.27 -2.75 -0.02 0.83 16 20 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.40 2.96 8.83 -40.82 -0.36 2.60 16 24 H 0.07 1.06 7.86 -51.93 -0.41 0.65 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.04 0.75 7.81 -51.93 -0.41 0.35 16 27 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 28 H -0.01 -0.17 7.83 -51.93 -0.41 -0.57 16 29 H 0.03 0.90 8.08 -51.93 -0.42 0.48 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.04 0.77 7.77 -51.93 -0.40 0.37 16 32 H 0.09 1.99 6.42 -51.93 -0.33 1.66 16 LS Contribution 268.77 15.07 4.05 4.05 Total: -1.00 -33.87 268.77 -6.92 -40.80 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -4.82 Total: -2.60 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -0.36 Total: -1.35 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: -0.86 Total: -47.71 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.08 Total: -10.21 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -33.87 -6.92 -40.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307386108.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.929 kcal (2) G-P(sol) polarization free energy of solvation -33.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds