Wall clock time and date at job start Mon Mar 30 2020 03:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 119.99824 * 2 1 4 4 O 1.21278 * 120.00191 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99991 * 179.97438 * 3 2 1 6 6 H 1.09000 * 110.27190 * 57.90809 * 5 3 2 7 7 C 1.54600 * 110.30823 * 295.71496 * 5 3 2 8 8 C 1.54936 * 102.91980 * 219.12514 * 7 5 3 9 9 N 1.48528 * 103.22894 * 37.41391 * 8 7 5 10 10 C 1.46906 * 111.00222 * 200.27752 * 9 8 7 11 11 C 1.50697 * 109.46781 * 287.39744 * 10 9 8 12 12 H 1.07997 * 120.00244 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99757 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99962 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00163 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46886 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47256 * 120.00076 * 15 13 11 18 18 H 1.48503 * 109.47178 * 240.00306 * 15 13 11 19 19 C 1.47904 * 105.82365 * 320.79281 * 9 8 7 20 20 H 1.09002 * 109.47391 * 300.00144 * 1 2 3 21 21 H 1.09001 * 109.46813 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47041 * 60.00328 * 1 2 3 23 23 H 0.97004 * 120.00104 * 179.97438 * 2 1 3 24 24 H 1.08997 * 110.72165 * 337.48518 * 7 5 3 25 25 H 1.08994 * 110.72049 * 100.76963 * 7 5 3 26 26 H 1.08999 * 110.67031 * 278.97922 * 8 7 5 27 27 H 1.08997 * 110.81008 * 155.91723 * 8 7 5 28 28 H 1.08992 * 109.46740 * 47.39691 * 10 9 8 29 29 H 1.08999 * 109.46841 * 167.39874 * 10 9 8 30 30 H 0.97001 * 119.99934 * 180.02562 * 14 13 11 31 31 H 1.09000 * 109.91480 * 265.98086 * 19 9 8 32 32 H 1.08991 * 110.08393 * 144.77090 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6459 1.1673 0.0006 6 1 4.0239 0.6239 -0.8654 7 6 4.1819 0.5385 1.3072 8 6 5.4007 1.4326 1.6474 9 7 4.9467 2.7906 1.2527 10 6 6.0906 3.6888 1.0459 11 6 6.6987 4.0425 2.3786 12 1 6.2773 3.6407 3.2882 13 6 7.7931 4.8792 2.4367 14 7 8.3059 5.3690 1.3291 15 14 8.5474 5.3172 4.0886 16 1 7.7901 4.6422 5.1730 17 1 9.9631 4.8702 4.1204 18 1 8.4881 6.7879 4.2855 19 6 4.1803 2.6115 0.0004 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8901 23 1 1.9500 -0.8401 0.0004 24 1 3.4323 0.5916 2.0967 25 1 4.4945 -0.4921 1.1393 26 1 6.2718 1.1337 1.0643 27 1 5.6223 1.3959 2.7139 28 1 6.8366 3.1904 0.4270 29 1 5.7534 4.5977 0.5477 30 1 9.0760 5.9573 1.3699 31 1 4.8324 2.7660 -0.8592 32 1 3.3487 3.3152 -0.0333 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307386108.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:14 Heat of formation + Delta-G solvation = -63.178075 kcal Electronic energy + Delta-G solvation = -14159.933655 eV Core-core repulsion = 11733.048028 eV Total energy + Delta-G solvation = -2426.885627 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.17624 -38.95955 -35.62311 -35.17460 -32.92482 -29.99312 -28.91690 -27.31451 -24.50988 -22.97978 -21.85251 -20.87852 -18.67808 -18.36840 -17.21383 -16.72191 -16.30359 -15.84825 -15.68691 -15.11929 -14.66683 -14.28005 -13.96415 -13.52304 -13.18105 -13.06537 -12.98410 -12.70085 -12.48742 -12.34123 -12.23853 -11.86138 -11.68584 -11.26861 -10.83656 -10.63274 -10.10903 -9.10280 -8.22136 -6.32960 1.40024 1.41738 1.55512 1.62680 2.28169 2.40361 3.10198 3.39056 3.52401 3.72790 3.97367 4.33285 4.40268 4.52288 4.57147 4.65049 4.74484 4.90199 4.97466 4.98538 5.02429 5.13275 5.18770 5.27488 5.48818 5.63425 6.01392 6.28534 6.50961 6.58639 6.82928 7.29281 7.37212 8.89709 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.067306 B = 0.006199 C = 0.006078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.910906 B = 4515.552892 C = 4605.586863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.718 5.718 3 C 0.521 3.479 4 O -0.584 6.584 5 C -0.110 4.110 6 H 0.132 0.868 7 C -0.094 4.094 8 C 0.042 3.958 9 N -0.533 5.533 10 C 0.200 3.800 11 C -0.524 4.524 12 H 0.061 0.939 13 C 0.000 4.000 14 N -0.936 5.936 15 Si 0.974 3.026 16 H -0.263 1.263 17 H -0.274 1.274 18 H -0.279 1.279 19 C 0.039 3.961 20 H 0.044 0.956 21 H 0.116 0.884 22 H 0.048 0.952 23 H 0.421 0.579 24 H 0.072 0.928 25 H 0.122 0.878 26 H 0.037 0.963 27 H 0.071 0.929 28 H -0.028 1.028 29 H -0.007 1.007 30 H 0.265 0.735 31 H 0.033 0.967 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.626 -16.221 -2.208 19.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.371 5.371 3 C 0.308 3.692 4 O -0.463 6.463 5 C -0.132 4.132 6 H 0.150 0.850 7 C -0.132 4.132 8 C -0.086 4.086 9 N -0.258 5.258 10 C 0.073 3.927 11 C -0.562 4.562 12 H 0.079 0.921 13 C -0.198 4.198 14 N -0.577 5.577 15 Si 0.798 3.202 16 H -0.187 1.187 17 H -0.199 1.199 18 H -0.205 1.205 19 C -0.090 4.090 20 H 0.063 0.937 21 H 0.134 0.866 22 H 0.067 0.933 23 H 0.258 0.742 24 H 0.091 0.909 25 H 0.140 0.860 26 H 0.055 0.945 27 H 0.090 0.910 28 H -0.010 1.010 29 H 0.012 0.988 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.277 -15.141 -1.873 18.972 hybrid contribution 1.307 0.300 -0.212 1.358 sum -9.970 -14.841 -2.085 18.000 Atomic orbital electron populations 1.21679 0.78820 1.04326 1.01193 1.45649 1.08286 1.08284 1.74838 1.20657 0.90263 0.83752 0.74519 1.90671 1.70960 1.33456 1.51248 1.22128 0.91431 0.97155 1.02478 0.84990 1.22488 0.96343 0.99837 0.94497 1.23137 0.96539 0.87932 1.00988 1.64745 1.22729 1.10190 1.28112 1.19532 0.86509 0.90733 0.95907 1.21458 1.12697 1.28730 0.93322 0.92086 1.25969 0.97282 0.95617 1.00898 1.70100 1.24495 1.33869 1.29190 0.85265 0.78104 0.77942 0.78871 1.18735 1.19913 1.20503 1.22802 0.97585 0.96866 0.91751 0.93720 0.86575 0.93313 0.74219 0.90910 0.85951 0.94501 0.91047 1.01021 0.98842 0.92595 0.94843 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 10.70 127.77 1.37 2.65 16 2 N -0.72 -12.78 5.69 -484.51 -2.76 -15.54 16 3 C 0.52 14.85 7.01 87.66 0.61 15.46 16 4 O -0.58 -22.88 15.24 -3.02 -0.05 -22.92 16 5 C -0.11 -3.05 3.38 -10.66 -0.04 -3.09 16 6 H 0.13 2.71 8.14 -2.39 -0.02 2.70 16 7 C -0.09 -2.36 6.58 31.80 0.21 -2.15 16 8 C 0.04 1.56 6.12 86.65 0.53 2.09 16 9 N -0.53 -25.05 5.23 -887.59 -4.65 -29.69 16 10 C 0.20 11.36 4.47 85.55 0.38 11.74 16 11 C -0.52 -31.13 8.91 25.60 0.23 -30.90 16 12 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 13 C 0.00 0.01 5.46 84.66 0.46 0.47 16 14 N -0.94 -57.99 13.29 21.45 0.28 -57.71 16 15 Si 0.97 45.42 29.54 68.60 2.03 47.45 16 16 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 C 0.04 1.56 6.27 86.45 0.54 2.10 16 20 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 21 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 22 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 23 H 0.42 4.13 8.83 -92.71 -0.82 3.32 16 24 H 0.07 1.88 7.86 -2.39 -0.02 1.86 16 25 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.04 1.39 7.81 -2.39 -0.02 1.37 16 27 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 28 H -0.03 -1.66 7.83 -2.39 -0.02 -1.68 16 29 H -0.01 -0.41 8.08 -2.39 -0.02 -0.43 16 30 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 31 H 0.03 1.36 7.77 -2.39 -0.02 1.34 16 32 H 0.07 3.07 6.42 -2.39 -0.02 3.06 16 Total: -1.00 -77.47 268.77 -0.55 -78.02 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: 0.28 Total: 2.02 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 4.30 Total: -1.62 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -7.12 Total: -102.94 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.05 Total: -22.92 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -77.47 -0.55 -78.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307386108.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.842 kcal (2) G-P(sol) polarization free energy of solvation -77.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds