Wall clock time and date at job start Mon Mar 30 2020 03:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46993 * 2 1 4 4 C 1.53001 * 109.47117 * 59.99509 * 3 2 1 5 5 C 1.52998 * 109.46748 * 299.99506 * 3 2 1 6 6 C 1.52994 * 109.46894 * 179.97438 * 3 2 1 7 7 H 1.09001 * 110.27834 * 302.08549 * 6 3 2 8 8 C 1.54948 * 110.31140 * 179.97438 * 6 3 2 9 9 C 1.55297 * 100.94667 * 204.63922 * 8 6 3 10 10 C 1.54387 * 102.25378 * 34.13129 * 9 8 6 11 11 H 1.08991 * 109.83042 * 98.15431 * 10 9 8 12 12 C 1.50694 * 109.83084 * 219.13209 * 10 9 8 13 13 H 1.07998 * 120.00531 * 359.97438 * 12 10 9 14 14 C 1.37879 * 120.00139 * 179.97438 * 12 10 9 15 15 N 1.31516 * 119.99798 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00461 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47176 * 89.99639 * 16 14 12 18 18 H 1.48501 * 109.47118 * 210.00362 * 16 14 12 19 19 H 1.48501 * 109.46851 * 330.00041 * 16 14 12 20 20 O 1.43243 * 107.58660 * 338.64249 * 10 9 8 21 21 H 1.09003 * 109.47306 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47703 * 300.00510 * 1 2 3 23 23 H 1.09008 * 109.46899 * 60.00544 * 1 2 3 24 24 H 1.08997 * 109.47703 * 239.99490 * 2 1 3 25 25 H 1.08999 * 109.46756 * 119.99312 * 2 1 3 26 26 H 1.08999 * 109.46672 * 180.02562 * 4 3 2 27 27 H 1.09005 * 109.46990 * 299.99729 * 4 3 2 28 28 H 1.08996 * 109.47201 * 60.00627 * 4 3 2 29 29 H 1.08996 * 109.47528 * 299.99992 * 5 3 2 30 30 H 1.09005 * 109.47593 * 60.00128 * 5 3 2 31 31 H 1.08999 * 109.47228 * 180.02562 * 5 3 2 32 32 H 1.09001 * 111.12743 * 86.71546 * 8 6 3 33 33 H 1.09002 * 111.11997 * 322.55940 * 8 6 3 34 34 H 1.09003 * 110.84981 * 275.94467 * 9 8 6 35 35 H 1.09001 * 111.02587 * 152.39873 * 9 8 6 36 36 H 0.96998 * 120.00403 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1638 1.2492 5 6 1.5300 2.1636 -1.2493 6 6 3.5699 1.4425 0.0006 7 1 3.9473 0.8995 0.8672 8 6 4.1078 2.8956 0.0000 9 6 5.5102 2.6907 -0.6349 10 6 5.2520 1.5448 -1.6368 11 1 5.1035 1.9538 -2.6361 12 6 6.4220 0.5951 -1.6398 13 1 7.2696 0.7803 -0.9967 14 6 6.4104 -0.5105 -2.4636 15 7 5.3780 -0.7364 -3.2464 16 14 7.8604 -1.6882 -2.4669 17 1 7.6379 -2.7500 -1.4530 18 1 7.9928 -2.3065 -3.8105 19 1 9.1031 -0.9441 -2.1398 20 8 4.0691 0.8573 -1.2125 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 1.8928 3.1916 1.2489 27 1 0.4398 2.1638 1.2491 28 1 1.8932 1.6501 2.1392 29 1 1.8934 1.6498 -2.1392 30 1 0.4400 2.1636 -1.2494 31 1 1.8937 3.1912 -1.2496 32 1 4.1891 3.2849 1.0149 33 1 3.4873 3.5439 -0.6188 34 1 6.2374 2.3900 0.1193 35 1 5.8405 3.5913 -1.1525 36 1 5.3700 -1.5139 -3.8263 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307482891.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:54 Heat of formation + Delta-G solvation = -70.400041 kcal Electronic energy + Delta-G solvation = -15238.323970 eV Core-core repulsion = 12914.665519 eV Total energy + Delta-G solvation = -2323.658452 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.94637 -35.97513 -32.40794 -30.98495 -29.91674 -27.53908 -26.84288 -24.88618 -23.46411 -20.74532 -20.04452 -17.85684 -16.41280 -15.61291 -14.97734 -14.46214 -14.15549 -14.01427 -13.14616 -12.81218 -12.46583 -12.02776 -11.97030 -11.79379 -11.61127 -11.44948 -11.03763 -10.85953 -10.70843 -10.53519 -10.39429 -10.21388 -10.05900 -9.94326 -9.57446 -9.41181 -9.09103 -8.46062 -7.70063 -5.91769 -4.05104 3.34168 3.40494 3.43081 4.47984 4.97009 5.17299 5.34778 5.41717 5.58656 5.66303 5.75234 5.79438 5.84057 5.92860 6.01970 6.11078 6.21249 6.26822 6.28419 6.36381 6.46444 6.56327 6.63273 6.63850 6.70296 6.79804 6.82459 6.93286 7.05189 7.11392 7.74031 7.95334 8.37284 8.72181 9.14158 9.66048 11.14628 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.037030 B = 0.009670 C = 0.008461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.957500 B = 2894.976195 C = 3308.363108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.109 4.109 3 C -0.060 4.060 4 C -0.140 4.140 5 C -0.137 4.137 6 C 0.089 3.911 7 H 0.047 0.953 8 C -0.155 4.155 9 C -0.146 4.146 10 C 0.208 3.792 11 H 0.035 0.965 12 C -0.544 4.544 13 H 0.057 0.943 14 C 0.079 3.921 15 N -0.863 5.863 16 Si 0.886 3.114 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 O -0.351 6.351 21 H 0.045 0.955 22 H 0.049 0.951 23 H 0.054 0.946 24 H 0.076 0.924 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.386 4.850 6.335 10.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.147 4.147 3 C -0.060 4.060 4 C -0.197 4.197 5 C -0.194 4.194 6 C 0.030 3.970 7 H 0.064 0.936 8 C -0.193 4.193 9 C -0.184 4.184 10 C 0.152 3.848 11 H 0.053 0.947 12 C -0.582 4.582 13 H 0.075 0.925 14 C -0.126 4.126 15 N -0.499 5.499 16 Si 0.714 3.286 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.199 1.199 20 O -0.270 6.270 21 H 0.065 0.935 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.095 0.905 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.552 4.562 6.075 10.712 hybrid contribution 0.962 -0.549 0.158 1.119 sum -6.590 4.012 6.233 9.918 Atomic orbital electron populations 1.21896 0.96999 1.00733 1.01300 1.21468 0.94414 0.96120 1.02695 1.20608 0.95051 0.95339 0.95008 1.21900 1.00456 1.00011 0.97383 1.21863 0.99174 0.99790 0.98582 1.22651 0.91556 0.91629 0.91170 0.93555 1.23346 0.97739 0.98194 0.99990 1.23199 0.95674 0.99763 0.99781 1.20231 0.83972 0.88357 0.92208 0.94696 1.21414 1.02479 1.10112 1.24168 0.92513 1.25036 0.95394 0.97481 0.94698 1.70037 1.28804 1.27326 1.23777 0.86712 0.83142 0.81459 0.77299 1.20609 1.21185 1.19904 1.88726 1.43747 1.57142 1.37404 0.93546 0.93196 0.92689 0.90522 0.92841 0.92928 0.92739 0.93134 0.91252 0.93642 0.93309 0.92272 0.91229 0.91918 0.92579 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.21 37.16 0.34 -1.75 16 2 C -0.11 -1.86 4.89 -26.73 -0.13 -2.00 16 3 C -0.06 -1.01 0.42 -154.51 -0.07 -1.08 16 4 C -0.14 -1.94 7.89 37.16 0.29 -1.64 16 5 C -0.14 -2.29 7.69 37.16 0.29 -2.00 16 6 C 0.09 1.81 2.67 -25.71 -0.07 1.74 16 7 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 8 C -0.16 -2.84 5.31 -24.49 -0.13 -2.97 16 9 C -0.15 -3.11 6.53 -24.79 -0.16 -3.27 16 10 C 0.21 5.44 3.35 -27.16 -0.09 5.35 16 11 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 12 C -0.54 -15.57 8.75 -34.44 -0.30 -15.88 16 13 H 0.06 1.59 7.52 -52.49 -0.39 1.19 16 14 C 0.08 2.29 5.41 -17.82 -0.10 2.19 16 15 N -0.86 -25.99 12.93 55.43 0.72 -25.28 16 16 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 O -0.35 -9.04 8.98 -35.23 -0.32 -9.35 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 22 H 0.05 0.61 6.43 -51.93 -0.33 0.28 16 23 H 0.05 0.74 6.43 -51.92 -0.33 0.41 16 24 H 0.08 1.55 7.84 -51.93 -0.41 1.14 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.05 0.69 7.19 -51.93 -0.37 0.32 16 27 H 0.05 0.67 6.43 -51.93 -0.33 0.34 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 1.36 7.62 -51.93 -0.40 0.97 16 30 H 0.04 0.65 6.43 -51.93 -0.33 0.32 16 31 H 0.05 0.77 6.14 -51.93 -0.32 0.46 16 32 H 0.06 0.95 8.05 -51.93 -0.42 0.53 16 33 H 0.07 1.21 5.89 -51.93 -0.31 0.90 16 34 H 0.06 1.33 7.65 -51.93 -0.40 0.94 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 275.66 15.07 4.15 4.15 Total: -1.00 -30.04 275.66 -6.61 -36.65 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -6.02 Total: -1.65 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -0.12 Total: -21.30 kcal Atomic # 7 Polarization: -25.99 SS G_CDS: 0.72 Total: -25.28 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -0.32 Total: -9.35 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.04 -6.61 -36.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307482891.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.747 kcal (2) G-P(sol) polarization free energy of solvation -30.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds